Rh7CG406600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003971
Physical Location & Seq
Reverse (-)
52206000 .. 52206291
292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG406600.1

Sequence Viewer

Length: 292 bp
ATGGTGATCACGATTGAAGATTTGAGGAAAAATGAGACCAGGCTTTGTGGGTCTTTCTTGAAAATGGTTGATGATGTGAAAGCCATGGCCACCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGACTTGATGATGAATAGGAACAAACCAGAAGCAGCATTCCCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGACGGATACAAAAGCAGAATCAGAATCAGAAGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTGCCACTACAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.21

Weight (kDa)

10.29

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 217, 260
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 263
AgsI TTSAA 4 cut(s) 17, 61, 136, 268
AjnI CCWGG 1 cut(s) 38
Alw26I GTCTC 2 cut(s) 29, 283
AlwI GGATC 2 cut(s) 217, 260
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 170, 273
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 16
BalI TGGCCA 1 cut(s) 89
BbvI GCAGC 2 cut(s) 182, 260
BccI CCATC 2 cut(s) 106, 121
BciT130I CCWGG 1 cut(s) 40
BciVI GTATCC 1 cut(s) 213
BclI TGATCA 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 29, 283
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 288
BfuI GTATCC 1 cut(s) 213
BglII AGATCT 1 cut(s) 203
BisI GCNGC 2 cut(s) 171, 274
BlsI GCNGC 2 cut(s) 172, 275
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BsaBI GATNNNNATC 2 cut(s) 208, 257
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 84
Bse8I GATNNNNATC 2 cut(s) 208, 257
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 84
BseJI GATNNNNATC 2 cut(s) 208, 257
BseMII CTCAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 182, 260
BshFI GGCC 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 29, 283
BsmBI CGTCTC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 29
Bsp143I GATC 4 cut(s) 6, 203, 209, 252
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 94
BspPI GGATC 2 cut(s) 217, 260
BspTNI GGTCTC 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 4 cut(s) 6, 203, 209, 252
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 84
BstKTI GATC 4 cut(s) 9, 206, 212, 255
BstMAI GTCTC 2 cut(s) 29, 283
BstMBI GATC 4 cut(s) 6, 203, 209, 252
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 182, 260
BstX2I RGATCY 2 cut(s) 203, 209
BstYI RGATCY 2 cut(s) 203, 209
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 84
CseI GACGC 1 cut(s) 265
CviAII CATG 1 cut(s) 85
CviJI RGCY 3 cut(s) 43, 83, 89
CviKI_1 RGCY 3 cut(s) 43, 83, 89
DdeI CTNAG 1 cut(s) 102
DpnI GATC 4 cut(s) 8, 205, 211, 254
DpnII GATC 4 cut(s) 6, 203, 209, 252
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 1 cut(s) 88
FaiI YATR 1 cut(s) 86
FatI CATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 171, 274
Fsp4HI GCNGC 2 cut(s) 171, 274
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 171, 274
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 265
Hin1II CATG 1 cut(s) 88
HinfI GANTC 2 cut(s) 232, 238
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 4 cut(s) 103, 120, 237, 243
Hpy188III TCNNGA 4 cut(s) 10, 58, 207, 213
HpyAV CCTTC 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 4 cut(s) 6, 203, 209, 252
LpnPI CCDG 5 cut(s) 25, 52, 137, 177, 192
Lsp1109I GCAGC 2 cut(s) 182, 260
MaeI CTAG 1 cut(s) 213
MalI GATC 4 cut(s) 8, 205, 211, 254
MboI GATC 4 cut(s) 6, 203, 209, 252
MboII GAAGA 2 cut(s) 29, 211
MflI RGATCY 2 cut(s) 203, 209
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 263
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 2 cut(s) 18, 243
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 84
NdeII GATC 4 cut(s) 6, 203, 209, 252
NlaIII CATG 1 cut(s) 88
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 232, 238
PkrI GCNGC 2 cut(s) 172, 275
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PsuI RGATCY 2 cut(s) 203, 209
SatI GCNGC 2 cut(s) 171, 274
Sau3AI GATC 4 cut(s) 6, 203, 209, 252
ScrFI CCNGG 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 288
Sse9I AATT 1 cut(s) 263
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 84
TasI AATT 1 cut(s) 263
TfiI GAWTC 2 cut(s) 232, 238
TseI GCWGC 2 cut(s) 170, 273
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 232
XapI RAATTY 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 212
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.