Rw7G032490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003971
Physical Location & Seq
Reverse (-)
47214090 .. 47214869
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G032490.1

Sequence Viewer

Length: 675 bp
ATGGTGATCACGATTGAAGATTTGAGGAAAAATGAGACCTGGCTTTGTGGGTCTTTCTTGAAAATGGTTGATGATGTGAAAGCCATGGCCACCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAACCAGCATTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGAAGAATCAGAAGCCGAGGATCATCATCAAATTCAAACGCTGCGTCTCTCCCACTACAGGTACTGCTTCTTATTCTTGCTCTGTTTCCCATGATTCTGGTATTGTTGTAAACCCAGACCCACTTCATGATGATCAGAAACAGGATTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGAAATCGAACAAGCAGGCGATGAAGGTTTTGAAGACATAAACTCGAAAAGTCTGAGAAAGGGAAAGAATGATAAGAGGGTCTTGCCAAGTGTGCAATTGATGACTGTGGATTTTCCAAAGGAAGAATTGCATGATCTTATTTGTGGATCAGATCACCCAAAGCCAAGAGCAAGAGCAAGAGCAATAGCAGGGAAGATGAATGAGATCAAGATCAGTATGACCAGCTTTGCTTTGTCCTTGTTAATCTGCTTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.28

Weight (kDa)

9.51

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 217, 254, 571
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 9 cut(s) 17, 61, 136, 262, 376, 382, 388, 394, 449
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 642
AluI AGCT 1 cut(s) 642
Alw26I GTCTC 2 cut(s) 29, 277
AlwI GGATC 3 cut(s) 217, 254, 571
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 267
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
AsuHPI GGTGA 2 cut(s) 16, 563
BalI TGGCCA 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 395, 427
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 254
BccI CCATC 2 cut(s) 106, 121
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 6, 358
BcoDI GTCTC 2 cut(s) 29, 277
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 282
BglII AGATCT 1 cut(s) 203
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 456
BsaBI GATNNNNATC 3 cut(s) 208, 251, 626
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 84, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse8I GATNNNNATC 3 cut(s) 208, 251, 626
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 84, 242
BseGI GGATG 1 cut(s) 225
BseJI GATNNNNATC 3 cut(s) 208, 251, 626
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 2 cut(s) 93, 461
BseXI GCAGC 1 cut(s) 254
BshFI GGCC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 29, 277
BsmBI CGTCTC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 29
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 94, 462
BspHI TCATGA 1 cut(s) 352
BspPI GGATC 3 cut(s) 217, 254, 571
BspQI GCTCTTC 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 84, 242
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 3 cut(s) 194, 389, 398
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 2 cut(s) 102, 470
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 225
BstMAI GTCTC 2 cut(s) 29, 277
BstMWI GCNNNNNNNGC 2 cut(s) 112, 508
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 2 cut(s) 203, 209
BstXI CCANNNNNNTGG 1 cut(s) 323
BstYI RGATCY 2 cut(s) 203, 209
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 433
CaiI CAGNNNCTG 1 cut(s) 290
CciI TCATGA 1 cut(s) 352
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 288
CviAII CATG 4 cut(s) 85, 317, 353, 548
CviJI RGCY 6 cut(s) 43, 83, 89, 241, 580, 642
CviKI_1 RGCY 6 cut(s) 43, 83, 89, 241, 580, 642
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 2 cut(s) 102, 470
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 3 cut(s) 194, 389, 398
EarI CTCTTC 3 cut(s) 194, 389, 398
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 4 cut(s) 88, 320, 356, 551
FaiI YATR 6 cut(s) 86, 318, 354, 455, 549, 635
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FatI CATG 4 cut(s) 84, 316, 352, 547
FbaI TGATCA 2 cut(s) 6, 358
Fnu4HI GCNGC 1 cut(s) 268
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 259
Hin1II CATG 4 cut(s) 88, 320, 356, 551
HinfI GANTC 2 cut(s) 232, 320
HphI GGTGA 2 cut(s) 16, 563
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 7 cut(s) 103, 120, 237, 363, 418, 471, 568
Hpy188III TCNNGA 6 cut(s) 10, 58, 207, 213, 353, 625
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 130, 434
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4V TGCA 3 cut(s) 223, 511, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 508
HpyF3I CTNAG 2 cut(s) 102, 470
Hsp92II CATG 4 cut(s) 88, 320, 356, 551
Ksp22I TGATCA 2 cut(s) 6, 358
LguI GCTCTTC 1 cut(s) 389
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 213
MboII GAAGA 8 cut(s) 29, 211, 241, 406, 415, 461, 551, 622
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 2 cut(s) 203, 209
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 6 cut(s) 257, 377, 383, 389, 512, 542
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 5 cut(s) 18, 209, 237, 399, 486
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 659
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 512
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 112, 508
NcoI CCATGG 1 cut(s) 84
NlaIII CATG 4 cut(s) 88, 320, 356, 551
NmeAIII GCCGAG 1 cut(s) 267
PagI TCATGA 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 389
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 232, 320
PkrI GCNGC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 2 cut(s) 203, 209
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 1 cut(s) 659
SatI GCNGC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 40
SetI ASST 5 cut(s) 41, 289, 410, 445, 644
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 282
Sse9I AATT 6 cut(s) 257, 377, 383, 389, 512, 542
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 2 cut(s) 423, 461
TasI AATT 6 cut(s) 257, 377, 383, 389, 512, 542
TfiI GAWTC 2 cut(s) 232, 320
Tru1I TTAA 1 cut(s) 659
Tru9I TTAA 1 cut(s) 659
TseI GCWGC 1 cut(s) 267
TspDTI ATGAA 4 cut(s) 164, 341, 453, 629
XapI RAATTY 1 cut(s) 257
XbaI TCTAGA 1 cut(s) 212
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.