Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003971

Physical Location & Seq

Genomic Coordinates Forward (+)

19156365 .. 19157860

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGTGATCAGGATTGAAGATTTGAGGAAAAATGAGACCAGGCTTTGTGGGTCTTTCTTGAAAATGGTTGAGGATGTGAAAGCCATGGCTAGCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCAGCTTTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGCAGAATCAGAGGCAGAGGATCATTATCAAATTCAAACGCTGCGTCTCTGCCACTACAGGTACTGCTTCTTATTCTTGTTCTGTTTCCCCTGATTCTGGTTTTGTTGTAAACCCAGACCCACTTCATGATGATCACAAACAGGATTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGAAATCGAACAAGCAGGCGATGAAGGTTTCAAAGAAATAAACTTGAAAAGGCTGAGAAAGGGAAAGAATGATAAGAGGGTATTACCAAGTGTGCAATCGATGACTGTGGATTTTCCAAAGGAAGAATTGCAGGATCGTATTCGTGGTATGGGTGGTTCAAATTGGAACAGTGTTGTGGTGAAGAATTTAACTCCTGCCTTAAGATCTAATGCATCTCTTGTCATTCAGGATCAGAAATTCCTAGAAGTAAGGGATGCAAAATTCCTCACCGAACAGATGATGATATCAGCGATTCTCCTCCCTGTCGAATTGTGCTTATGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

28.16

Weight (kDa)

9.74

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0226751 RchiOBHm_Chr7g0226791 RchiOBHm_Chr7g0226831 RchiOBHm_Chr7g0226961 RchiOBHm_Chr7g0227011
rosa_laevigata	RLG00000001688 RLG00000001689 RLG00000001691 RLG00000001692 RLG00000001696 RLG00000001699 RLG00000001701 RLG00000001703 RLG00000001704 RLG00000001705
rosa_roxburghii	Rroxscaffold_3G00232490 Rroxscaffold_3G00237390 Rroxscaffold_3G00237400 Rroxscaffold_6G00388760
rosa_rugosa	Rorug07G0239400
rosa_samantha	Rh7AG389500 Rh7AG389900 Rh7AG390100 Rh7AG390200 Rh7BG266100 Rh7BG373500 Rh7BG373700 Rh7CG406600 Rh7CG408800 Rh7CG409000 Rh7CG409100
rosa_wichuraiana	Rw7G032480 Rw7G032490 Rw7G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	217, 254, 558, 654
AcsI	RAATTY	4 cut(s)	257, 601, 653, 677
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflII	CTTAAG	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	29, 277
AlwI	GGATC	4 cut(s)	217, 254, 558, 654
AlwNI	CAGNNNCTG	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	170, 267
ApoI	RAATTY	4 cut(s)	257, 601, 653, 677
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsuHPI	GGTGA	3 cut(s)	16, 607, 676
AsuNHI	GCTAGC	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbvI	GCAGC	2 cut(s)	182, 254
BccI	CCATC	2 cut(s)	106, 121
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	2 cut(s)	6, 358
BcoDI	GTCTC	2 cut(s)	29, 277
BfaI	CTAG	3 cut(s)	90, 213, 659
BfmI	CTRYAG	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	616
BglII	AGATCT	2 cut(s)	203, 620
BisI	GCNGC	2 cut(s)	171, 268
BlsI	GCNGC	2 cut(s)	172, 269
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	3 cut(s)	210, 638, 661
BmtI	GCTAGC	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	515
BsaBI	GATNNNNATC	2 cut(s)	208, 251
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse8I	GATNNNNATC	2 cut(s)	208, 251
BseBI	CCWGG	1 cut(s)	40
BseCI	ATCGAT	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	79, 225, 676
BseJI	GATNNNNATC	2 cut(s)	208, 251
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	93, 461
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	2 cut(s)	182, 254
BshVI	ATCGAT	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	29, 277
BsmBI	CGTCTC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	8 cut(s)	6, 203, 209, 246, 358, 550, 620, 646
Bsp19I	CCATGG	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	94, 462
BspDI	ATCGAT	1 cut(s)	515
BspHI	TCATGA	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	93
BspPI	GGATC	4 cut(s)	217, 254, 558, 654
BspQI	GCTCTTC	1 cut(s)	389
BspTI	CTTAAG	1 cut(s)	616
BspTNI	GGTCTC	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	8 cut(s)	6, 203, 209, 246, 358, 550, 620, 646
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	523, 587
Bst6I	CTCTTC	3 cut(s)	194, 389, 398
BstAFI	CTTAAG	1 cut(s)	616
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	91, 433
BstDEI	CTNAG	2 cut(s)	102, 470
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	3 cut(s)	79, 225, 676
BstKTI	GATC	8 cut(s)	9, 206, 212, 249, 361, 553, 623, 649
BstMAI	GTCTC	2 cut(s)	29, 277
BstMBI	GATC	8 cut(s)	6, 203, 209, 246, 358, 550, 620, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	182, 254
BstX2I	RGATCY	3 cut(s)	203, 209, 620
BstYI	RGATCY	3 cut(s)	203, 209, 620
Bsu15I	ATCGAT	1 cut(s)	515
BsuTUI	ATCGAT	1 cut(s)	515
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	3 cut(s)	79, 225, 676
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	91, 433
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	352
ClaI	ATCGAT	1 cut(s)	515
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	2 cut(s)	85, 353
CviJI	RGCY	5 cut(s)	43, 83, 89, 173, 469
CviKI_1	RGCY	5 cut(s)	43, 83, 89, 173, 469
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	102, 470
DpnI	GATC	8 cut(s)	8, 205, 211, 248, 360, 552, 622, 648
DpnII	GATC	8 cut(s)	6, 203, 209, 246, 358, 550, 620, 646
Eam1104I	CTCTTC	3 cut(s)	194, 389, 398
EarI	CTCTTC	3 cut(s)	194, 389, 398
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	702
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	2 cut(s)	88, 356
FaiI	YATR	4 cut(s)	86, 354, 566, 736
FatI	CATG	2 cut(s)	84, 352
FbaI	TGATCA	2 cut(s)	6, 358
Fnu4HI	GCNGC	2 cut(s)	171, 268
FokI	GGATG	3 cut(s)	86, 232, 683
Fsp4HI	GCNGC	2 cut(s)	171, 268
FspBI	CTAG	3 cut(s)	90, 213, 659
GluI	GCNGC	2 cut(s)	171, 268
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	88, 356
HinfI	GANTC	3 cut(s)	232, 320, 709
HphI	GGTGA	3 cut(s)	16, 607, 676
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	5 cut(s)	103, 120, 237, 418, 651
Hpy188III	TCNNGA	6 cut(s)	10, 58, 207, 213, 353, 644
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	130, 434
HpyCH4III	ACNGT	2 cut(s)	523, 587
HpyCH4V	TGCA	5 cut(s)	223, 511, 547, 629, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	2 cut(s)	102, 470
Hsp92II	CATG	2 cut(s)	88, 356
Ksp22I	TGATCA	2 cut(s)	6, 358
Kzo9I	GATC	8 cut(s)	6, 203, 209, 246, 358, 550, 620, 646
LguI	GCTCTTC	1 cut(s)	389
Lsp1109I	GCAGC	2 cut(s)	182, 254
LweI	GCATC	3 cut(s)	210, 638, 661
MaeI	CTAG	3 cut(s)	90, 213, 659
MalI	GATC	8 cut(s)	8, 205, 211, 248, 360, 552, 622, 648
MboI	GATC	8 cut(s)	6, 203, 209, 246, 358, 550, 620, 646
MboII	GAAGA	6 cut(s)	29, 211, 406, 415, 551, 610
MflI	RGATCY	3 cut(s)	203, 209, 620
MnlI	CCTC	9 cut(s)	18, 64, 209, 231, 237, 399, 486, 692, 725
Mph1103I	ATGCAT	1 cut(s)	631
MseI	TTAA	2 cut(s)	605, 617
MspCI	CTTAAG	1 cut(s)	616
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	8 cut(s)	6, 203, 209, 246, 358, 550, 620, 646
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	88, 356
NsiI	ATGCAT	1 cut(s)	631
PagI	TCATGA	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	232, 320, 709
PkrI	GCNGC	2 cut(s)	172, 269
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PsrI	GAACNNNNNNTAC	2 cut(s)	556, 588
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	3 cut(s)	203, 209, 620
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	605, 617
SatI	GCNGC	2 cut(s)	171, 268
Sau3AI	GATC	8 cut(s)	6, 203, 209, 246, 358, 550, 620, 646
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	4 cut(s)	175, 289, 410, 445
SfaNI	GCATC	3 cut(s)	210, 638, 661
SfcI	CTRYAG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
SspMI	CTAG	3 cut(s)	90, 213, 659
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	523, 587
TaqI	TCGA	3 cut(s)	423, 515, 723
TfiI	GAWTC	3 cut(s)	232, 320, 709
Tru1I	TTAA	2 cut(s)	605, 617
Tru9I	TTAA	2 cut(s)	605, 617
TscAI	CASTG	1 cut(s)	592
TseI	GCWGC	2 cut(s)	170, 267
TspDTI	ATGAA	3 cut(s)	164, 341, 453
TspRI	CASTG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	616
XapI	RAATTY	4 cut(s)	257, 601, 653, 677
XbaI	TCTAGA	1 cut(s)	212
XspI	CTAG	3 cut(s)	90, 213, 659
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.