RLG00000001705

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003971
Physical Location & Seq
Forward (+)
19333491 .. 19334258
768 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001705

Sequence Viewer

Length: 663 bp
ATGGTGATCAGGATTGAAGATTTGAGGAAAAATGAGACCAGGCTTTGTGGGTCTTTCTTGAAAATGGTTGAGGATGTGAAAGCCATGGCAAGCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTCATGATGAATAGGAACAAACCAGAAGCAGCATTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGCAGAATCAGAGGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTGCCACTACAGGTACTGCTTCTTATTCTTGTTCTGTTTCCCCTGATTCTGGTTTTGTTGTAAACCCAGACCCACTTCATGATGATCACAAACAGGATTTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGAAATCGAACAAGCAGGCGATGAAGGTTTCAAAGAAATAAACTCGAAAAGGCTGAGAAAGGGAAAGAATGATAAGAGGGTATTACCAACTGTGCAATCGATGACTGTGGATTTTCCAAAGGAAGAATTGCAGGATCGTATTGGTGGATCGGATAACCCAAAGCCAAGAGCAACACCAATAGCAGGGGAGAGGAAGCAGATCAAGAGCAATATGACCAGCTTTGCTTTGTCCTTGTTAATCTGCGTTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.87

Weight (kDa)

9.79

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 217, 254, 552, 565
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 323, 593
AgsI TTSAA 8 cut(s) 17, 61, 136, 262, 376, 382, 388, 442
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 630
AluI AGCT 1 cut(s) 630
Alw26I GTCTC 2 cut(s) 29, 277
AlwI GGATC 4 cut(s) 217, 254, 552, 565
AlwNI CAGNNNCTG 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 170, 267
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
Asp700I GAANNNNTTC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 389, 421
BbvI GCAGC 2 cut(s) 182, 254
BccI CCATC 2 cut(s) 106, 121
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 6, 358
BcoDI GTCTC 2 cut(s) 29, 277
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 282
BglII AGATCT 1 cut(s) 203
BisI GCNGC 2 cut(s) 171, 268
BlsI GCNGC 2 cut(s) 172, 269
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 509
BsaBI GATNNNNATC 2 cut(s) 208, 251
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 593
Bse8I GATNNNNATC 2 cut(s) 208, 251
BseBI CCWGG 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 79, 225
BseJI GATNNNNATC 2 cut(s) 208, 251
BseLI CCNNNNNNNGG 2 cut(s) 323, 593
BseMII CTCAG 2 cut(s) 93, 455
BseXI GCAGC 2 cut(s) 182, 254
BshVI ATCGAT 1 cut(s) 509
BslI CCNNNNNNNGG 2 cut(s) 323, 593
BsmAI GTCTC 2 cut(s) 29, 277
BsmBI CGTCTC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 29
Bsp143I GATC 8 cut(s) 6, 203, 209, 246, 358, 544, 557, 609
Bsp19I CCATGG 1 cut(s) 84
BspCNI CTCAG 2 cut(s) 94, 456
BspDI ATCGAT 1 cut(s) 509
BspHI TCATGA 2 cut(s) 144, 352
BspPI GGATC 4 cut(s) 217, 254, 552, 565
BspQI GCTCTTC 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 8 cut(s) 6, 203, 209, 246, 358, 544, 557, 609
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 502, 517
Bst6I CTCTTC 3 cut(s) 194, 383, 392
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 91, 427
BstDEI CTNAG 2 cut(s) 102, 464
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 79, 225
BstKTI GATC 8 cut(s) 9, 206, 212, 249, 361, 547, 560, 612
BstMAI GTCTC 2 cut(s) 29, 277
BstMBI GATC 8 cut(s) 6, 203, 209, 246, 358, 544, 557, 609
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 182, 254
BstX2I RGATCY 2 cut(s) 203, 209
BstYI RGATCY 2 cut(s) 203, 209
Bsu15I ATCGAT 1 cut(s) 509
BsuTUI ATCGAT 1 cut(s) 509
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 2 cut(s) 79, 225
Cac8I GCNNGC 2 cut(s) 91, 427
CaiI CAGNNNCTG 1 cut(s) 290
CciI TCATGA 2 cut(s) 144, 352
ClaI ATCGAT 1 cut(s) 509
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 288
CviAII CATG 3 cut(s) 85, 145, 353
CviJI RGCY 5 cut(s) 43, 83, 463, 574, 630
CviKI_1 RGCY 5 cut(s) 43, 83, 463, 574, 630
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 2 cut(s) 102, 464
DpnI GATC 8 cut(s) 8, 205, 211, 248, 360, 546, 559, 611
DpnII GATC 8 cut(s) 6, 203, 209, 246, 358, 544, 557, 609
Eam1104I CTCTTC 3 cut(s) 194, 383, 392
EarI CTCTTC 3 cut(s) 194, 383, 392
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 3 cut(s) 88, 148, 356
FaiI YATR 4 cut(s) 86, 146, 354, 623
FatI CATG 3 cut(s) 84, 144, 352
FbaI TGATCA 2 cut(s) 6, 358
Fnu4HI GCNGC 2 cut(s) 171, 268
FokI GGATG 2 cut(s) 86, 232
Fsp4HI GCNGC 2 cut(s) 171, 268
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 171, 268
HgaI GACGC 1 cut(s) 259
Hin1II CATG 3 cut(s) 88, 148, 356
HinfI GANTC 2 cut(s) 232, 320
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 5 cut(s) 103, 120, 237, 412, 562
Hpy188III TCNNGA 8 cut(s) 10, 58, 145, 207, 213, 353, 613, 660
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 130, 428
HpyCH4III ACNGT 2 cut(s) 502, 517
HpyCH4V TGCA 3 cut(s) 223, 505, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 102, 464
Hsp92II CATG 3 cut(s) 88, 148, 356
Ksp22I TGATCA 2 cut(s) 6, 358
Kzo9I GATC 8 cut(s) 6, 203, 209, 246, 358, 544, 557, 609
LguI GCTCTTC 1 cut(s) 383
Lsp1109I GCAGC 2 cut(s) 182, 254
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 213
MalI GATC 8 cut(s) 8, 205, 211, 248, 360, 546, 559, 611
MboI GATC 8 cut(s) 6, 203, 209, 246, 358, 544, 557, 609
MboII GAAGA 5 cut(s) 29, 211, 400, 409, 545
MflI RGATCY 2 cut(s) 203, 209
MluCI AATT 4 cut(s) 257, 377, 383, 536
MnlI CCTC 8 cut(s) 18, 64, 209, 231, 237, 393, 480, 594
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 1 cut(s) 647
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 84
NdeII GATC 8 cut(s) 6, 203, 209, 246, 358, 544, 557, 609
NlaIII CATG 3 cut(s) 88, 148, 356
PagI TCATGA 2 cut(s) 144, 352
PciSI GCTCTTC 1 cut(s) 383
PctI GAATGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 232, 320
PkrI GCNGC 2 cut(s) 172, 269
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 2 cut(s) 203, 209
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 647
SatI GCNGC 2 cut(s) 171, 268
Sau3AI GATC 8 cut(s) 6, 203, 209, 246, 358, 544, 557, 609
ScrFI CCNGG 1 cut(s) 40
SetI ASST 4 cut(s) 289, 404, 439, 632
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 282
Sse9I AATT 4 cut(s) 257, 377, 383, 536
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 502, 517
TaqI TCGA 3 cut(s) 417, 455, 509
TasI AATT 4 cut(s) 257, 377, 383, 536
TfiI GAWTC 2 cut(s) 232, 320
Tru1I TTAA 1 cut(s) 647
Tru9I TTAA 1 cut(s) 647
TseI GCWGC 2 cut(s) 170, 267
TspDTI ATGAA 4 cut(s) 133, 164, 341, 447
XapI RAATTY 1 cut(s) 257
XbaI TCTAGA 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.