Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003971

Physical Location & Seq

Genomic Coordinates Reverse (-)

40191950 .. 40192368

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG373500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTGATCAGGATTGAAGATTTGAGGAAAAATGAGACCAGGCTTTGCGGGTCTTTCTTGAAAATGGTTGAGGATGTGAAAGCCATGGCCAGCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCAGCCTTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGCAGAATCAGAAGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTGCCACTACAGAAACAGGATTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

13.08

Weight (kDa)

8.97

Isoelectric Point (pI)

69.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0226751 RchiOBHm_Chr7g0226791 RchiOBHm_Chr7g0226831 RchiOBHm_Chr7g0226961 RchiOBHm_Chr7g0227011
rosa_laevigata	RLG00000001688 RLG00000001689 RLG00000001691 RLG00000001692 RLG00000001696 RLG00000001699 RLG00000001701 RLG00000001703 RLG00000001704 RLG00000001705
rosa_roxburghii	Rroxscaffold_3G00232490 Rroxscaffold_3G00237390 Rroxscaffold_3G00237400 Rroxscaffold_6G00388760
rosa_rugosa	Rorug07G0239400
rosa_samantha	Rh7AG389500 Rh7AG389900 Rh7AG390100 Rh7AG390200 Rh7BG266100 Rh7BG373500 Rh7BG373700 Rh7CG406600 Rh7CG408800 Rh7CG409000 Rh7CG409100
rosa_wichuraiana	Rw7G032480 Rw7G032490 Rw7G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	217, 254
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	257
AgsI	TTSAA	8 cut(s)	17, 61, 136, 262, 299, 305, 311, 317
AjnI	CCWGG	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	29, 277
AlwI	GGATC	2 cut(s)	217, 254
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	170, 267
ApoI	RAATTY	1 cut(s)	257
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsuHPI	GGTGA	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	89
BarI	GAAGNNNNNNTAC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	182, 254
BccI	CCATC	2 cut(s)	106, 121
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	29, 277
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	2 cut(s)	171, 268
BlsI	GCNGC	2 cut(s)	172, 269
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	208, 251
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	84
Bse8I	GATNNNNATC	2 cut(s)	208, 251
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	79, 225
BseJI	GATNNNNATC	2 cut(s)	208, 251
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	182, 254
BshFI	GGCC	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	29, 277
BsmBI	CGTCTC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	6, 203, 209, 246
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	94
BspPI	GGATC	2 cut(s)	217, 254
BspQI	GCTCTTC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	4 cut(s)	6, 203, 209, 246
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	40
Bst6I	CTCTTC	3 cut(s)	194, 312, 321
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	79, 225
BstKTI	GATC	4 cut(s)	9, 206, 212, 249
BstMAI	GTCTC	2 cut(s)	29, 277
BstMBI	GATC	4 cut(s)	6, 203, 209, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	182, 254
BstX2I	RGATCY	2 cut(s)	203, 209
BstYI	RGATCY	2 cut(s)	203, 209
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	79, 225
Cac8I	GCNNGC	1 cut(s)	91
CseI	GACGC	1 cut(s)	259
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	4 cut(s)	43, 83, 89, 173
CviKI_1	RGCY	4 cut(s)	43, 83, 89, 173
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	4 cut(s)	8, 205, 211, 248
DpnII	GATC	4 cut(s)	6, 203, 209, 246
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	194, 312, 321
EarI	CTCTTC	3 cut(s)	194, 312, 321
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	88
FaiI	YATR	1 cut(s)	86
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	171, 268
FokI	GGATG	2 cut(s)	86, 232
Fsp4HI	GCNGC	2 cut(s)	171, 268
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	171, 268
HaeIII	GGCC	1 cut(s)	89
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	103, 120, 237, 341
Hpy188III	TCNNGA	4 cut(s)	10, 58, 207, 213
HpyAV	CCTTC	2 cut(s)	130, 184
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	6, 203, 209, 246
LguI	GCTCTTC	1 cut(s)	312
LpnPI	CCDG	7 cut(s)	25, 52, 103, 137, 177, 192, 276
Lsp1109I	GCAGC	2 cut(s)	182, 254
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	213
MalI	GATC	4 cut(s)	8, 205, 211, 248
MboI	GATC	4 cut(s)	6, 203, 209, 246
MboII	GAAGA	4 cut(s)	29, 211, 329, 338
MflI	RGATCY	2 cut(s)	203, 209
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	4 cut(s)	257, 300, 306, 312
MluNI	TGGCCA	1 cut(s)	89
MnlI	CCTC	5 cut(s)	18, 64, 209, 237, 322
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	4 cut(s)	6, 203, 209, 246
NlaIII	CATG	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	172, 269
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	203, 209
SapI	GCTCTTC	1 cut(s)	312
SatI	GCNGC	2 cut(s)	171, 268
Sau3AI	GATC	4 cut(s)	6, 203, 209, 246
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	1 cut(s)	333
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	257, 300, 306, 312
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	84
TasI	AATT	4 cut(s)	257, 300, 306, 312
TfiI	GAWTC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	170, 267
TspDTI	ATGAA	1 cut(s)	164
XapI	RAATTY	1 cut(s)	257
XbaI	TCTAGA	1 cut(s)	212
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.