Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003349

Physical Location & Seq

Genomic Coordinates Forward (+)

8107233 .. 8112475

Gene Structure 5243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAAGCAGCAAAAACAAAATCGAAGCTCTAGAGGCGGAGAAGGACTCCCTCATCAAATCGAACAAAGCCACCTAGCAGACCATGTGGGAGCATGGGACTGGAAGCAACAGCTCTACGCTGAAGCCAACACCGACTCTGCTCTCATCCTTCTCGCCAGACTCAAAGCCATATACAGTGAAGCCCTACTTCCCCAATCGTACGTCGTCGAATCTCTCCTCTCCATCCAAGCCTTCTTCACTCCCGTCTTGCCTGACCTCCCTTCCTCTTCTTCCAAGCTCAATCACTCCCAAGACGACGACCCCGAGTTCATATACAGCACTTGGCTCTGGTCCAAGTTTGACGAGCTTGTCAAGTCCCTCATCCAACTCCTTCGTTTGCCGAAATCTGATGAAAATCTCAAGGAGGTGGTGTTGGATACACTGATGGAGTTTTTGAAGTTGGGAAACGGAAAAAGGTTTCACTCTGCTATATTCCTTAGGCTTCTTCGTAACATTAGAATATGCTCTCGTTTGATGATTACTCAAAGCCATCTACAGCGAAGCCCCACTTCCCCAATCGGTTCATGCCGTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGCGACCTTGGAATTAAAGCATTGATATGGAATCTCTCCCCCAGTGTTTGTAGGACTTTGAATATCTCATCTCTTAGATATCCGTCATCTCGTGTATCTATTCTACGGCCGCGAGAGAAGCTTGATGACTTCCAGATTCCCATCTCATCAGCTTTGCAATGGTCTTTAAGTGTCAGGCATGCCTGGGTAGCCAAAAGAAAGAGCACCTACAATGGGCTCAACTGCCATGCCCTCTACTGTAAGTTTAGGGTTCTAAATCACTTGGATGAATTCAAATTTGTGGAAGAATTCATGGCCGCCTCAAGAGTATATCCCCACGAACACTTTAGAATTGGTTCTAAATCTGCAAACTCAAGAGAGACCATTCGTCAAGAGTATCGGAAGGCTGTCAAGAGGCGAATTTTTACAGTGACAGGCACAAGAGCTGATGAAGAGGAGAATCATTGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

351

Amino Acids

40.35

Weight (kDa)

9.31

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17250
fragaria_vesca	FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780
malus_domestica	MD05G1138800.v1.1 MD10G1141700.v1.1 MD11G1014400.v1.1
prunus_persica	Prupe.8G180000_v2.0.a1
pyrus_communis	pycom10g12150
rosa_chinensis	RchiOBHm_Chr1g0336401 RchiOBHm_Chr6g0280901 RchiOBHm_Chr7g0239681
rosa_laevigata	RLG00000000928 RLG00000000950 RLG00000009676 RLG00000013018 RLG00000021242 RLG00000023914
rosa_multiflora	Rmu_sc0004772.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031900 Rroxscaffold_5G00366860 Rroxscaffold_7G00187510
rosa_rugosa	Rorug06G0049800 Rorug06G0136100
rosa_samantha	Rh1CG252200 Rh3BG154100 Rh3CG270200 Rh4AG229500 Rh6AG249000 Rh6BG250900 Rh6CG251700 Rh6DG243400 Rh7AG482800
rosa_wichuraiana	Rw6G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AccII	CGCG	1 cut(s)	712
AciI	CCGC	3 cut(s)	36, 710, 897
AcoI	YGGCCR	2 cut(s)	707, 894
AcsI	RAATTY	4 cut(s)	869, 875, 887, 999
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	813
AgsI	TTSAA	5 cut(s)	436, 575, 599, 661, 874
AhdI	GACNNNNNGTC	1 cut(s)	966
AjnI	CCWGG	1 cut(s)	782
AluBI	AGCT	8 cut(s)	27, 112, 277, 346, 581, 721, 752, 1025
AluI	AGCT	8 cut(s)	27, 112, 277, 346, 581, 721, 752, 1025
Alw21I	GWGCWC	1 cut(s)	806
Alw26I	GTCTC	1 cut(s)	953
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	707, 894
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	4 cut(s)	869, 875, 887, 999
Asp700I	GAANNNNTTC	2 cut(s)	594, 934
AspS9I	GGNCC	1 cut(s)	330
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	330
AxyI	CCTNAGG	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	819
BauI	CACGAG	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	806
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	4 cut(s)	230, 418, 537, 749
BceAI	ACGGC	2 cut(s)	552, 722
BciT130I	CCWGG	1 cut(s)	784
BciVI	GTATCC	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	953
BfaI	CTAG	2 cut(s)	30, 74
BfmI	CTRYAG	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	8, 710, 897
BlsI	GCNGC	3 cut(s)	9, 711, 898
Bme1390I	CCNGG	1 cut(s)	784
Bme18I	GGWCC	1 cut(s)	330
BmeRI	GACNNNNNGTC	1 cut(s)	966
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	784
BmrI	ACTGGG	1 cut(s)	636
BmuI	ACTGGG	1 cut(s)	636
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpuEI	CTTGAG	3 cut(s)	383, 886, 937
BsaBI	GATNNNNATC	2 cut(s)	393, 740
BsaI	GGTCTC	1 cut(s)	953
BsaJI	CCNNGG	2 cut(s)	607, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	813
Bse1I	ACTGG	2 cut(s)	104, 642
Bse21I	CCTNAGG	1 cut(s)	476
Bse3DI	GCAATG	1 cut(s)	764
Bse8I	GATNNNNATC	2 cut(s)	393, 740
BseBI	CCWGG	1 cut(s)	784
BseDI	CCNNGG	2 cut(s)	607, 783
BseGI	GGATG	4 cut(s)	144, 222, 360, 871
BseJI	GATNNNNATC	2 cut(s)	393, 740
BseLI	CCNNNNNNNGG	1 cut(s)	813
BseMI	GCAATG	1 cut(s)	764
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	104, 642
BseRI	GAGGAG	2 cut(s)	206, 1049
BseX3I	CGGCCG	1 cut(s)	707
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	712
Bsh1285I	CGRYCG	1 cut(s)	710
BshFI	GGCC	2 cut(s)	709, 896
BsiEI	CGRYCG	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	806
BsiHKCI	CYCGRG	1 cut(s)	302
BsiWI	CGTACG	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	110, 340
BslI	CCNNNNNNNGG	1 cut(s)	813
BsmAI	GTCTC	1 cut(s)	953
BsmFI	GGGAC	2 cut(s)	110, 340
BsnI	GGCC	2 cut(s)	709, 896
Bso31I	GGTCTC	1 cut(s)	953
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	806, 819
BspACI	CCGC	3 cut(s)	36, 710, 897
BspANI	GGCC	2 cut(s)	709, 896
BspCNI	CTCAG	1 cut(s)	599
BspFNI	CGCG	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	953
BsrDI	GCAATG	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	104, 642
BssECI	CCNNGG	2 cut(s)	607, 783
BssSI	CACGAG	1 cut(s)	690
BssT1I	CCWWGG	1 cut(s)	607
Bst2BI	CACGAG	1 cut(s)	690
Bst2UI	CCWGG	1 cut(s)	784
Bst4CI	ACNGT	3 cut(s)	176, 839, 1009
Bst6I	CTCTTC	2 cut(s)	271, 1026
BstC8I	GCNNGC	2 cut(s)	583, 780
BstDEI	CTNAG	3 cut(s)	476, 586, 674
BstF5I	GGATG	4 cut(s)	144, 222, 360, 871
BstFNI	CGCG	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	953
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 718, 788
BstNI	CCWGG	1 cut(s)	784
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	1 cut(s)	782
BstSFI	CTRYAG	1 cut(s)	533
BstUI	CGCG	1 cut(s)	712
BstV1I	GCAGC	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	707
Bsu36I	CCTNAGG	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	709, 896
BtsCI	GGATG	4 cut(s)	144, 222, 360, 871
BtsIMutI	CAGTG	4 cut(s)	181, 419, 649, 1014
Cac8I	GCNNGC	2 cut(s)	583, 780
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	6 cut(s)	83, 93, 564, 779, 827, 892
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	3 cut(s)	476, 586, 674
DrdI	GACNNNNNNGTC	1 cut(s)	347
DriI	GACNNNNNGTC	1 cut(s)	966
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	2 cut(s)	707, 894
EagI	CGGCCG	1 cut(s)	707
Eam1104I	CTCTTC	2 cut(s)	271, 1026
Eam1105I	GACNNNNNGTC	1 cut(s)	966
EarI	CTCTTC	2 cut(s)	271, 1026
EciI	GGCGGA	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	707
Eco130I	CCWWGG	1 cut(s)	607
Eco24I	GRGCYC	1 cut(s)	819
Eco31I	GGTCTC	1 cut(s)	953
Eco32I	GATATC	1 cut(s)	680
Eco47I	GGWCC	1 cut(s)	330
Eco52I	CGGCCG	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	302
EcoRI	GAATTC	2 cut(s)	869, 887
EcoRII	CCWGG	1 cut(s)	782
EcoRV	GATATC	1 cut(s)	680
EcoT14I	CCWWGG	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	6 cut(s)	86, 96, 567, 782, 830, 895
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 532, 564
FaqI	GGGAC	2 cut(s)	110, 340
FatI	CATG	6 cut(s)	82, 92, 563, 778, 826, 891
Fnu4HI	GCNGC	3 cut(s)	8, 710, 897
FokI	GGATG	4 cut(s)	131, 209, 347, 878
FriOI	GRGCYC	1 cut(s)	819
Fsp4HI	GCNGC	3 cut(s)	8, 710, 897
FspBI	CTAG	2 cut(s)	30, 74
GluI	GCNGC	3 cut(s)	8, 710, 897
HaeIII	GGCC	2 cut(s)	709, 896
Hin1II	CATG	6 cut(s)	86, 96, 567, 782, 830, 895
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	7 cut(s)	45, 134, 159, 209, 631, 736, 1039
Hpy188I	TCNGA	3 cut(s)	388, 589, 981
Hpy188III	TCNNGA	6 cut(s)	30, 733, 903, 954, 971, 991
Hpy99I	CGWCG	3 cut(s)	206, 209, 299
HpyAV	CCTTC	7 cut(s)	35, 158, 241, 270, 380, 569, 976
HpyCH4III	ACNGT	3 cut(s)	176, 839, 1009
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	757, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 718, 788
HpyF3I	CTNAG	3 cut(s)	476, 586, 674
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	86, 96, 567, 782, 830, 895
LmnI	GCTCC	2 cut(s)	89, 578
Lsp1109I	GCAGC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	30, 74
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	488, 1009
MboII	GAAGA	6 cut(s)	226, 258, 261, 476, 896, 1043
MhlI	GDGCHC	2 cut(s)	806, 819
MluCI	AATT	6 cut(s)	612, 869, 875, 887, 930, 999
MlyI	GAGTC	3 cut(s)	39, 128, 153
MmeI	TCCRAC	2 cut(s)	388, 393
MroXI	GAANNNNTTC	2 cut(s)	594, 934
MseI	TTAA	2 cut(s)	615, 767
MslI	CAYNNNNRTG	2 cut(s)	625, 864
MspR9I	CCNGG	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	784
MvnI	CGCG	1 cut(s)	712
MwoI	GCNNNNNNNGC	3 cut(s)	33, 718, 788
NlaIII	CATG	6 cut(s)	86, 96, 567, 782, 830, 895
NmuCI	GTSAC	1 cut(s)	1009
NspI	RCATGY	1 cut(s)	782
PaeI	GCATGC	1 cut(s)	782
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdmI	GAANNNNTTC	2 cut(s)	594, 934
PfeI	GAWTC	4 cut(s)	209, 631, 736, 1039
Pfl23II	CGTACG	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	9, 711, 898
PleI	GAGTC	3 cut(s)	39, 128, 153
PpsI	GAGTC	3 cut(s)	39, 128, 153
Psp6I	CCWGG	1 cut(s)	782
PspGI	CCWGG	1 cut(s)	782
PspLI	CGTACG	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	330
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	2 cut(s)	625, 864
SaqAI	TTAA	2 cut(s)	615, 767
SatI	GCNGC	3 cut(s)	8, 710, 897
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	3 cut(s)	39, 128, 153
ScrFI	CCNGG	1 cut(s)	784
SduI	GDGCHC	2 cut(s)	806, 819
SfcI	CTRYAG	1 cut(s)	533
SinI	GGWCC	1 cut(s)	330
SmiMI	CAYNNNNRTG	2 cut(s)	625, 864
SmlI	CTYRAG	3 cut(s)	398, 901, 952
SmoI	CTYRAG	3 cut(s)	398, 901, 952
SphI	GCATGC	1 cut(s)	782
Sse9I	AATT	6 cut(s)	612, 869, 875, 887, 930, 999
SsiI	CCGC	3 cut(s)	36, 710, 897
SspMI	CTAG	2 cut(s)	30, 74
StyD4I	CCNGG	1 cut(s)	782
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	3 cut(s)	176, 839, 1009
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	22, 60, 207
TasI	AATT	6 cut(s)	612, 869, 875, 887, 930, 999
TauI	GCSGC	2 cut(s)	712, 899
TfiI	GAWTC	4 cut(s)	209, 631, 736, 1039
Tru1I	TTAA	2 cut(s)	615, 767
Tru9I	TTAA	2 cut(s)	615, 767
TscAI	CASTG	4 cut(s)	181, 426, 649, 1014
TseFI	GTSAC	1 cut(s)	1009
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	1009
TspDTI	ATGAA	7 cut(s)	17, 298, 405, 552, 880, 882, 1044
TspGWI	ACGGA	2 cut(s)	462, 672
TspRI	CASTG	4 cut(s)	181, 426, 649, 1014
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	4 cut(s)	869, 875, 887, 999
XbaI	TCTAGA	1 cut(s)	29
XceI	RCATGY	1 cut(s)	782
XmnI	GAANNNNTTC	2 cut(s)	594, 934
XspI	CTAG	2 cut(s)	30, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.