RLG00000000950

Nucleolar complex protein 4 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
8369721 .. 8370577
857 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000950

Sequence Viewer

Length: 327 bp
ATGTACAGCGAAGCCCTACTTCCCCAATCGCCCAATCACTCCCAGGACGACGACCCCGAGTTCATATACAACACTTGGCTCTGGTACAAGTTTGACGAGCTCGTCGAGTCCCTCATCCAACTCCTTCTTTTGTCAGAATCCGATGAAACTCTCAAGGAGGTGGTGTTGGATACACTGATGGAGTTTTTGAAGTTGGGAAACGGAAGAAGGTTTCACTCTGCTATATTCCTTAGGTTTCTTTGTAACATTGTGTACTCCACAACATTGCCGAATTTCTTGGTAGACTTGCTTGCATCAAAGTATTTCAAGTATATTGATGTCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.79

Weight (kDa)

4.61

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 271
AfaI GTAC 3 cut(s) 5, 86, 254
AgsI TTSAA 2 cut(s) 190, 307
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 56
ApoI RAATTY 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 56
AxyI CCTNAGG 1 cut(s) 230
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 1 cut(s) 163
BfuI GTATCC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bse21I CCTNAGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 102
Bsp1407I TGTACA 1 cut(s) 3
BsrDI GCAATG 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 114
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 230
BsuI GTATCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 291
Csp6I GTAC 3 cut(s) 4, 85, 253
CviJI RGCY 3 cut(s) 14, 79, 100
CviKI_1 RGCY 3 cut(s) 14, 79, 100
CviQI GTAC 3 cut(s) 4, 85, 253
DdeI CTNAG 1 cut(s) 230
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco81I CCTNAGG 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 102
FaiI YATR 4 cut(s) 65, 67, 224, 312
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 1 cut(s) 94
FblI GTMKAC 1 cut(s) 282
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 102
HinfI GANTC 2 cut(s) 107, 137
Hpy166II GTNNAC 2 cut(s) 253, 283
Hpy188I TCNGA 3 cut(s) 136, 142, 323
Hpy8I GTNNAC 2 cut(s) 253, 283
Hpy99I CGWCG 2 cut(s) 53, 107
HpyAV CCTTC 2 cut(s) 134, 201
HpyCH4V TGCA 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 230
LpnPI CCDG 3 cut(s) 29, 56, 67
LweI GCATC 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 242
MboII GAAGA 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 271
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 142, 147
MnlI CCTC 2 cut(s) 122, 151
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 102
PfeI GAWTC 1 cut(s) 137
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
RsaI GTAC 3 cut(s) 5, 86, 254
RsaNI GTAC 3 cut(s) 4, 85, 253
SacI GAGCTC 1 cut(s) 102
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 102
SetI ASST 4 cut(s) 102, 162, 212, 236
SfaNI GCATC 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 271
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 42
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 271
TatI WGTACW 2 cut(s) 3, 252
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 1 cut(s) 180
TspDTI ATGAA 2 cut(s) 52, 159
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.