Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003349

Physical Location & Seq

Genomic Coordinates Reverse (-)

56279052 .. 56280246

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009676

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAAGTCTTTATTGCTCTTGATGCGGCCGATGAGTTCAGTGAAAAGCAGAAAATCACCAGGCTCTCCGACCTCCGAACCTCCAGAACCCACATCAACAACCTCCCTTCTTCCAAGCCCAATCACTCCCAGGACGATGACCCCGAGTTCATATATCGCACTTGGCTCTGGTCCAAGTTCGAAGAGCTCGTCGAGTCCCTCATCCAGCTCCTCCTTTTGCTGGAATCCGATGAAACTCTCAAGGAGGTGGTGTTGGATACACTGATGGAGTTTTTGAAGTTGGGAAATGGAGGAAGGTTTCACTCTGCTCTATTCCATAGGTTTCTTCATAACATTGTGTACTCTACAACGTCGCCGAATTTCTTGGTAGACTTGCTTGCATCAAAGTATTTCAAGTATATTGATGTCTGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

139

Amino Acids

16.23

Weight (kDa)

5.14

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17250
fragaria_vesca	FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780
malus_domestica	MD05G1138800.v1.1 MD10G1141700.v1.1 MD11G1014400.v1.1
prunus_persica	Prupe.8G180000_v2.0.a1
pyrus_communis	pycom10g12150
rosa_chinensis	RchiOBHm_Chr1g0336401 RchiOBHm_Chr6g0280901 RchiOBHm_Chr7g0239681
rosa_laevigata	RLG00000000928 RLG00000000950 RLG00000009676 RLG00000013018 RLG00000021242 RLG00000023914
rosa_multiflora	Rmu_sc0004772.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031900 Rroxscaffold_5G00366860 Rroxscaffold_7G00187510
rosa_rugosa	Rorug06G0049800 Rorug06G0136100
rosa_samantha	Rh1CG252200 Rh3BG154100 Rh3CG270200 Rh4AG229500 Rh6AG249000 Rh6BG250900 Rh6CG251700 Rh6DG243400 Rh7AG482800
rosa_wichuraiana	Rw6G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	277, 394
AjnI	CCWGG	2 cut(s)	59, 129
AluBI	AGCT	2 cut(s)	187, 208
AluI	AGCT	2 cut(s)	187, 208
Alw21I	GWGCWC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	358
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	180
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	61, 131
BciVI	GTATCC	1 cut(s)	250
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	61, 131
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	61, 131
BmsI	GCATC	2 cut(s)	13, 389
BpmI	CTGGAG	1 cut(s)	67
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	61, 131
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	200
BseX3I	CGGCCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	61, 131
Bst6I	CTCTTC	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	201
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	61, 131
BstSCI	CCNGG	2 cut(s)	59, 129
BstZI	CGGCCG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	46, 260
Cac8I	GCNNGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	340
CviJI	RGCY	6 cut(s)	29, 64, 118, 166, 187, 208
CviKI_1	RGCY	6 cut(s)	29, 64, 118, 166, 187, 208
CviQI	GTAC	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	171
Eco52I	CGGCCG	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	59, 129
EcoT38I	GRGCYC	1 cut(s)	189
FaiI	YATR	5 cut(s)	152, 154, 318, 330, 399
FaqI	GGGAC	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	29
HinfI	GANTC	2 cut(s)	194, 224
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	340, 370
Hpy188I	TCNGA	3 cut(s)	70, 77, 229
Hpy188III	TCNNGA	2 cut(s)	20, 84
Hpy8I	GTNNAC	2 cut(s)	340, 370
Hpy99I	CGWCG	2 cut(s)	194, 355
HpyAV	CCTTC	2 cut(s)	117, 288
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	350
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	9 cut(s)	46, 73, 97, 116, 143, 154, 206, 218, 394
LweI	GCATC	2 cut(s)	13, 389
MaeII	ACGT	1 cut(s)	350
MboII	GAAGA	3 cut(s)	102, 194, 317
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	358
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	93, 234
MnlI	CCTC	7 cut(s)	83, 91, 113, 209, 221, 238, 284
MseI	TTAA	1 cut(s)	415
MspR9I	CCNGG	2 cut(s)	61, 131
MvaI	CCWGG	2 cut(s)	61, 131
MwoI	GCNNNNNNNGC	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 186
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	59, 129
PspGI	CCWGG	2 cut(s)	59, 129
PspPI	GGNCC	1 cut(s)	171
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	61, 131
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	9 cut(s)	75, 83, 105, 189, 210, 249, 299, 323, 353
SfaNI	GCATC	2 cut(s)	13, 389
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	59, 129
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	2 cut(s)	180, 192
TasI	AATT	1 cut(s)	358
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TscAI	CASTG	2 cut(s)	46, 267
TspDTI	ATGAA	3 cut(s)	139, 246, 317
TspRI	CASTG	2 cut(s)	46, 267
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.