Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003349

Physical Location & Seq

Genomic Coordinates Forward (+)

53139650 .. 53151175

Gene Structure 11526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG229500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCTCTTTCTGCCAAGCTACCCCCATGGAATGGTGTACTGTAATTTTGCAATCTCGTCTCTTGTCGAACCCAGTGGGTTTCTCGTGTCGGGCTCATCCAAACGGCGTGTGGAAGCAGCAGTAGCTTTAAATTCTATAGGTACAGATGATGCAACCGTGGCCTCCATTCTCTTGAAGAAGCAAAAGCAGAAGCAGACCAGGCTCTCCGACCTCCGAACCTCCAGAACCCACATTAACAACCTCCCTTCTTCCAAGCCCAATCACTCCCAGGACGACGACCCCGAGTTCATATACCTCACTTGGCTCTGGTCCAAGTTCGACGAGCTCGTCGAGTCCCTCATCCAGCTACTCCTTTTGCTGGAATCCGATGAAACTCTCAAGGAGGTGGTGTTGGATACACTGATGGAGTTTTTGAAGTTGGGGAATGGAGGAAGGTTTCACTCTGCTATATTCCATAGGTTTCTTCATAACATTGTGTACTCTACAACGTCGTCGAATTTCTTGGTAGACTTGCTTGCATCAAAGTATTTCAAGTATATTGATGTCTGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

184

Amino Acids

20.98

Weight (kDa)

6.29

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17250
fragaria_vesca	FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780
malus_domestica	MD05G1138800.v1.1 MD10G1141700.v1.1 MD11G1014400.v1.1
prunus_persica	Prupe.8G180000_v2.0.a1
pyrus_communis	pycom10g12150
rosa_chinensis	RchiOBHm_Chr1g0336401 RchiOBHm_Chr6g0280901 RchiOBHm_Chr7g0239681
rosa_laevigata	RLG00000000928 RLG00000000950 RLG00000009676 RLG00000013018 RLG00000021242 RLG00000023914
rosa_multiflora	Rmu_sc0004772.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031900 Rroxscaffold_5G00366860 Rroxscaffold_7G00187510
rosa_rugosa	Rorug06G0049800 Rorug06G0136100
rosa_samantha	Rh1CG252200 Rh3BG154100 Rh3CG270200 Rh4AG229500 Rh6AG249000 Rh6BG250900 Rh6CG251700 Rh6DG243400 Rh7AG482800
rosa_wichuraiana	Rw6G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	507
AcsI	RAATTY	2 cut(s)	130, 496
AfaI	GTAC	3 cut(s)	38, 142, 479
AfiI	CCNNNNNNNGG	2 cut(s)	31, 358
AgsI	TTSAA	3 cut(s)	175, 415, 532
AjnI	CCWGG	2 cut(s)	197, 267
AluBI	AGCT	4 cut(s)	18, 125, 325, 346
AluI	AGCT	4 cut(s)	18, 125, 325, 346
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	130, 496
AspS9I	GGNCC	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	309
BanII	GRGCYC	2 cut(s)	95, 327
BauI	CACGAG	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	199, 269
BciVI	GTATCC	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	199, 269
Bme18I	GGWCC	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	199, 269
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	2 cut(s)	139, 527
BmuI	ACTGGG	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	25, 156, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 358
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	199, 269
BseDI	CCNNGG	3 cut(s)	25, 156, 267
BseGI	GGATG	2 cut(s)	95, 339
BseLI	CCNNNNNNNGG	2 cut(s)	31, 358
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	31, 358
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	95, 327
Bsp19I	CCATGG	1 cut(s)	25
BspANI	GGCC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	3 cut(s)	25, 156, 267
BssSI	CACGAG	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	199, 269
Bst4CI	ACNGT	2 cut(s)	41, 157
BstC8I	GCNNGC	1 cut(s)	516
BstDSI	CCRYGG	2 cut(s)	25, 156
BstF5I	GGATG	2 cut(s)	95, 339
BstMAI	GTCTC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 122, 158, 199
BstNI	CCWGG	2 cut(s)	199, 269
BstSCI	CCNGG	2 cut(s)	197, 267
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	2 cut(s)	25, 156
BtsCI	GGATG	2 cut(s)	95, 339
BtsIMutI	CAGTG	2 cut(s)	79, 398
Cac8I	GCNNGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	37, 141, 478
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	9 cut(s)	18, 93, 125, 161, 202, 256, 304, 325, 346
CviKI_1	RGCY	9 cut(s)	18, 93, 125, 161, 202, 256, 304, 325, 346
CviQI	GTAC	3 cut(s)	37, 141, 478
DraI	TTTAAA	1 cut(s)	129
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	2 cut(s)	95, 327
Eco47I	GGWCC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	197, 267
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	2 cut(s)	95, 327
ErhI	CCWWGG	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	1 cut(s)	29
FaiI	YATR	8 cut(s)	27, 137, 290, 292, 449, 456, 468, 537
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	82, 326
FriOI	GRGCYC	2 cut(s)	95, 327
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	29
HinfI	GANTC	2 cut(s)	332, 362
Hpy166II	GTNNAC	3 cut(s)	37, 478, 508
Hpy188I	TCNGA	3 cut(s)	208, 215, 367
Hpy188III	TCNNGA	2 cut(s)	172, 222
Hpy8I	GTNNAC	3 cut(s)	37, 478, 508
Hpy99I	CGWCG	5 cut(s)	278, 323, 332, 493, 496
HpyAV	CCTTC	2 cut(s)	255, 426
HpyCH4III	ACNGT	2 cut(s)	41, 157
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	3 cut(s)	50, 152, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 122, 158, 199
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	2 cut(s)	139, 527
MaeII	ACGT	1 cut(s)	488
MboII	GAAGA	3 cut(s)	187, 240, 455
MhlI	GDGCHC	2 cut(s)	95, 327
MluCI	AATT	3 cut(s)	43, 130, 496
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	2 cut(s)	231, 372
MnlI	CCTC	8 cut(s)	172, 221, 229, 251, 305, 347, 376, 422
MseI	TTAA	3 cut(s)	128, 234, 553
MspR9I	CCNGG	2 cut(s)	199, 269
MvaI	CCWGG	2 cut(s)	199, 269
MwoI	GCNNNNNNNGC	4 cut(s)	10, 122, 158, 199
NcoI	CCATGG	1 cut(s)	25
NlaIII	CATG	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	3 cut(s)	279, 324, 327
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	197, 267
PspGI	CCWGG	2 cut(s)	197, 267
PspPI	GGNCC	1 cut(s)	309
RsaI	GTAC	3 cut(s)	38, 142, 479
RsaNI	GTAC	3 cut(s)	37, 141, 478
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	128, 234, 553
SatI	GCNGC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	309
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	199, 269
SduI	GDGCHC	2 cut(s)	95, 327
SfaNI	GCATC	2 cut(s)	139, 527
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	43, 130, 496
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	197, 267
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	41, 157
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	4 cut(s)	66, 318, 330, 494
TasI	AATT	3 cut(s)	43, 130, 496
TatI	WGTACW	2 cut(s)	36, 477
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	3 cut(s)	128, 234, 553
Tru9I	TTAA	3 cut(s)	128, 234, 553
TscAI	CASTG	2 cut(s)	79, 405
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	277, 384, 455
TspRI	CASTG	2 cut(s)	79, 405
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	309
XapI	RAATTY	2 cut(s)	130, 496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.