RLG00000021242

Nucleolar complex protein 4 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
73215624 .. 73218174
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021242

Sequence Viewer

Length: 420 bp
ATGTGGGAGTGTAGGACTGGAAGCAACAGCACTACGCTGAAGCCAACACCGACTCTGCTCTCATCCCTCTCGCCAGACTCAAAGCCATCTACAGCGAAGCCCTACTTCCCCAATCGCACTTGGCTCTGGTCCAAGTTTGACGAGCTCGTCGAGTCCCTCATCCAGCTCCTTCTTTTGCCGGAATCCGATGAAACTCTCAAGGTGGTGTTGGATACATTGATGGAGTTTTTGAAGTTGGGAAACGGAAGAAGGTTTCACTCTGCTATATTCCGTAGGTTTCTTCGTAACATTGTCAGTACTCTCTCACCCCTCGCCAGACTCAAAGCCATCTACAGTGAAGCCCCACTTCCCCAATTGGTTCATGCCTTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGAGACCTTGCTATGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.81

Weight (kDa)

9.26

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 298
AgsI TTSAA 3 cut(s) 232, 373, 397
AluBI AGCT 3 cut(s) 145, 166, 379
AluI AGCT 3 cut(s) 145, 166, 379
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 297
AvaII GGWCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 3 cut(s) 94, 214, 335
BciVI GTATCC 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 395
BfmI CTRYAG 2 cut(s) 90, 331
BfuI GTATCC 1 cut(s) 205
BmcAI AGTACT 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 62, 159
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 397
BspTNI GGTCTC 1 cut(s) 395
BsrI ACTGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 2 cut(s) 62, 159
BstMAI GTCTC 1 cut(s) 395
BstSFI CTRYAG 2 cut(s) 90, 331
BsuI GTATCC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 62, 159
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 297
CviAII CATG 1 cut(s) 362
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 1 cut(s) 384
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 1 cut(s) 365
FaiI YATR 3 cut(s) 266, 363, 412
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 330, 362
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 361
FokI GGATG 2 cut(s) 49, 146
FriOI GRGCYC 1 cut(s) 147
HapII CCGG 1 cut(s) 179
Hin1II CATG 1 cut(s) 365
HinfI GANTC 5 cut(s) 52, 77, 152, 182, 318
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 297
Hpy188I TCNGA 2 cut(s) 187, 387
Hpy188III TCNNGA 1 cut(s) 417
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 179, 243, 367
HpyCH4III ACNGT 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 1 cut(s) 365
LmnI GCTCC 2 cut(s) 171, 376
LpnPI CCDG 7 cut(s) 3, 87, 112, 176, 192, 328, 365
MaeIII GTNAC 1 cut(s) 284
MboII GAAGA 2 cut(s) 258, 272
MfeI CAATTG 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 353
MlyI GAGTC 4 cut(s) 46, 71, 161, 312
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 3 cut(s) 77, 167, 320
MroXI GAANNNNTTC 1 cut(s) 392
MspI CCGG 1 cut(s) 179
MunI CAATTG 1 cut(s) 353
NlaIII CATG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 182
PleI GAGTC 4 cut(s) 46, 71, 160, 312
PpsI GAGTC 4 cut(s) 46, 71, 160, 312
Psp124BI GAGCTC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 129
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SacI GAGCTC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 129
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 4 cut(s) 46, 71, 161, 312
SduI GDGCHC 1 cut(s) 147
SetI ASST 7 cut(s) 147, 168, 204, 254, 278, 381, 407
SfcI CTRYAG 2 cut(s) 90, 331
SinI GGWCC 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 353
SstI GAGCTC 1 cut(s) 147
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 353
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 1 cut(s) 182
TscAI CASTG 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 204, 350
TspGWI ACGGA 2 cut(s) 258, 260
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.