Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003349

Physical Location & Seq

Genomic Coordinates Reverse (-)

29900940 .. 29902785

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGCGCAAGGTTAGTGAAGCAACAAAAACAAAATCGAAGCTCTAGAGGCGGAGAAGGACTCCCTCATCAAATCGAACAAGGCTACCTAGAAGACCATGTGGGAGTGTGGGACTGGAAGCAACAGCTCTACGCTGAAGCCAACACTGACTCTGCTCTCATCCCTCTCGCCAGACTCAAAGCCATCTACAGCAAAGCCCTACTTCCCCAATCGGTGGTGTTGGATAAATTGATGGAGTTTTTGAAGTTGGGAAACAGAAGAAGGTTTCACTCTGCTATATTCCTTAGGTTTCTTCGTAACATTGTGTACTCTACAACATTGCCGAATTTCTTGGTAGACTTGCTTGCATCAAAGTATTTCAAGTATATTGATGGGGTTTTGGGTGGCCAACCGCTGCTAGGGCATCATCCTCTAGGTGGACCGGGGCTGTCATCTGTGGGAAATCAGGGACCGGGGAGTGGTCAGTACTCTCTCACCCTTCGCCAGACTCAAAGCCATCTACAGCGAAGCCCCACTTCCCCAATCGCAGTGAAAGAGGATTCCAAATCTGCTGAAGCTAAATTTATGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

191

Amino Acids

21.13

Weight (kDa)

9.85

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17250
fragaria_vesca	FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780
malus_domestica	MD05G1138800.v1.1 MD10G1141700.v1.1 MD11G1014400.v1.1
prunus_persica	Prupe.8G180000_v2.0.a1
pyrus_communis	pycom10g12150
rosa_chinensis	RchiOBHm_Chr1g0336401 RchiOBHm_Chr6g0280901 RchiOBHm_Chr7g0239681
rosa_laevigata	RLG00000000928 RLG00000000950 RLG00000009676 RLG00000013018 RLG00000021242 RLG00000023914
rosa_multiflora	Rmu_sc0004772.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031900 Rroxscaffold_5G00366860 Rroxscaffold_7G00187510
rosa_rugosa	Rorug06G0049800 Rorug06G0136100
rosa_samantha	Rh1CG252200 Rh3BG154100 Rh3CG270200 Rh4AG229500 Rh6AG249000 Rh6BG250900 Rh6CG251700 Rh6DG243400 Rh7AG482800
rosa_wichuraiana	Rw6G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	336
AciI	CCGC	2 cut(s)	51, 392
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	325, 560
AcuI	CTGAAG	2 cut(s)	156, 573
AfaI	GTAC	2 cut(s)	308, 467
AfiI	CCNNNNNNNGG	4 cut(s)	214, 398, 416, 458
AgsI	TTSAA	2 cut(s)	244, 361
AluBI	AGCT	3 cut(s)	42, 127, 557
AluI	AGCT	3 cut(s)	42, 127, 557
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	2 cut(s)	325, 560
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	419, 449
AsuC2I	CCSGG	2 cut(s)	423, 453
AsuHPI	GGTGA	1 cut(s)	466
AvaII	GGWCC	2 cut(s)	419, 449
AxyI	CCTNAGG	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	4 cut(s)	191, 226, 365, 504
BcnI	CCSGG	2 cut(s)	423, 453
BfaI	CTAG	4 cut(s)	45, 89, 398, 413
BfmI	CTRYAG	2 cut(s)	187, 500
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	423, 453
Bme18I	GGWCC	2 cut(s)	419, 449
BmgT120I	GGNCC	2 cut(s)	419, 449
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	423, 453
BmsI	GCATC	2 cut(s)	356, 412
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BpuMI	CCSGG	2 cut(s)	423, 453
BsaJI	CCNNGG	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 398, 416, 458
Bse1I	ACTGG	1 cut(s)	119
Bse21I	CCTNAGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	422, 452
BseGI	GGATG	2 cut(s)	159, 406
BseLI	CCNNNNNNNGG	4 cut(s)	214, 398, 416, 458
BseMI	GCAATG	1 cut(s)	317
BseNI	ACTGG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	381
BshFI	GGCC	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	422, 452
BslFI	GGGAC	2 cut(s)	125, 462
BslI	CCNNNNNNNGG	4 cut(s)	214, 398, 416, 458
BsmFI	GGGAC	2 cut(s)	125, 462
BsnI	GGCC	1 cut(s)	387
BspACI	CCGC	2 cut(s)	51, 392
BspANI	GGCC	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	422, 452
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	159, 406
BstHHI	GCGC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 400
BstSCI	CCNGG	2 cut(s)	421, 451
BstSFI	CTRYAG	2 cut(s)	187, 500
BstV1I	GCAGC	1 cut(s)	381
BstV2I	GAAGAC	1 cut(s)	99
Bsu36I	CCTNAGG	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	159, 406
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	144, 534
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	419, 449
Csp6I	GTAC	2 cut(s)	307, 466
CviAII	CATG	1 cut(s)	98
CviQI	GTAC	2 cut(s)	307, 466
DdeI	CTNAG	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	419, 449
Eco57I	CTGAAG	2 cut(s)	156, 573
Eco81I	CCTNAGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	101
FaiI	YATR	4 cut(s)	99, 278, 366, 566
FalI	AAGNNNNNCTT	4 cut(s)	186, 218, 499, 531
FaqI	GGGAC	2 cut(s)	125, 462
FatI	CATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	2 cut(s)	146, 393
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	4 cut(s)	45, 89, 398, 413
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	2 cut(s)	422, 452
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	60, 149, 174, 487, 539
HpaII	CCGG	2 cut(s)	422, 452
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	3 cut(s)	307, 337, 419
Hpy188I	TCNGA	1 cut(s)	572
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	3 cut(s)	307, 337, 419
HpyAV	CCTTC	3 cut(s)	50, 255, 488
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 400
HpyF3I	CTNAG	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	6
LpnPI	CCDG	6 cut(s)	100, 184, 431, 435, 465, 497
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	2 cut(s)	356, 412
MaeI	CTAG	4 cut(s)	45, 89, 398, 413
MaeIII	GTNAC	1 cut(s)	296
MboII	GAAGA	3 cut(s)	104, 270, 284
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	3 cut(s)	227, 325, 560
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	4 cut(s)	54, 143, 168, 481
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	5 cut(s)	41, 75, 174, 420, 529
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	2 cut(s)	422, 452
MspR9I	CCNGG	2 cut(s)	423, 453
MwoI	GCNNNNNNNGC	2 cut(s)	48, 400
NciI	CCSGG	2 cut(s)	423, 453
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	396
PleI	GAGTC	4 cut(s)	54, 143, 168, 481
PpsI	GAGTC	4 cut(s)	54, 143, 168, 481
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	2 cut(s)	419, 449
RsaI	GTAC	2 cut(s)	308, 467
RsaNI	GTAC	2 cut(s)	307, 466
SatI	GCNGC	1 cut(s)	395
Sau96I	GGNCC	2 cut(s)	419, 449
ScaI	AGTACT	1 cut(s)	467
SchI	GAGTC	4 cut(s)	54, 143, 168, 481
ScrFI	CCNGG	2 cut(s)	423, 453
SetI	ASST	8 cut(s)	14, 44, 90, 129, 266, 290, 418, 559
SfaNI	GCATC	2 cut(s)	356, 412
SfcI	CTRYAG	2 cut(s)	187, 500
SinI	GGWCC	2 cut(s)	419, 449
Sse9I	AATT	3 cut(s)	227, 325, 560
SsiI	CCGC	2 cut(s)	51, 392
SspMI	CTAG	4 cut(s)	45, 89, 398, 413
StyD4I	CCNGG	2 cut(s)	421, 451
TaqI	TCGA	2 cut(s)	37, 75
TasI	AATT	3 cut(s)	227, 325, 560
TatI	WGTACW	2 cut(s)	306, 465
TfiI	GAWTC	1 cut(s)	539
TscAI	CASTG	2 cut(s)	151, 534
TseI	GCWGC	1 cut(s)	394
TspRI	CASTG	2 cut(s)	151, 534
Van91I	CCANNNNNTGG	1 cut(s)	214
VpaK11BI	GGWCC	2 cut(s)	419, 449
XapI	RAATTY	2 cut(s)	325, 560
XbaI	TCTAGA	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	4 cut(s)	45, 89, 398, 413
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.