Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003349

Physical Location & Seq

Genomic Coordinates Forward (+)

19243410 .. 19249616

Gene Structure 6207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0136100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2697 bp

ATGGAGCCGGCAGTGGATATACGGCCCGGTAAAGACGCCACTTACGACGGTTTGTATTCCAAGGGGCGTAAGAGGTTGAAATTGTCTTCTGATAGAAATGTATGTGATGGAATGGTCTTGTCTGCAAGTATGCATAGTGAAATTGTACAGAAGCCATGTTCTACTTCTGCAGTTGTCGATTACACTGATCCGTTAGCTATACAAAACTTGCTGGAGGGATTAGATGACAGTGGTAAATATGGAAGTGTTGCAAAGGACATGAAGACATTTACTGCTCAAATACATCAAGTACTGAACCCTTTGCTTGCAAAATACCCCACACTATCAAATGCATACTTTAAAGAGGAAAGAAGGCATAGTCAATTGGCTCCTAAATTAGCAATTCAACAAGCTCCGTCCCTGGCACAAAATAATGTCATTGATTTGGATGATGACTGTGTTGACAATGCTCCGGCAGCATCATCGCCTATTGTAATCATTGATTCAGATGAGGAACAGAATGAAGATCAGAGGCCTTCTTACTCTTTCCAGGAGGTTTTTATGACACAACCATCTTATTCTTTCAAGGATGTAATTATGCCACAGCCATCTCAACAAGTTTTCAGGAAGCACTTTGGGGTGAGGGATCGAGTAGAAGAAGCAAGTCTGTCTGCTGGAACTGAAACAAATAAAGATCCAGGTGTTTATGTGGGTGTAGAAGATGAAGAAAGTACCGAAGATGATGATGGTTTAGGAGATGCATGGATGGAAATGTCAATGGCATTAGAATCTTCAAAGGATGTCACTGTAGACCCTTTATCTGAAGAAAGAACGAATGAAGGCGACTGTGAGCATTCTTTTGTCTTAAAAGATGATCTTGGATATGTTTGCCGCATCTGTGGGGTTATTGACAGAGGAATTGATACAATATTTGAGTTTCAGTATAACAAGGTCAAAAGGAGTACAAGAACGTACATGCCTGATTCTCGTAATGGGAAAGACAGAGATTCAACTGAGACGGGTGGAGTTAAACTTTCTGAAGATGGTTTGATAATAACTGAAATATCTGCTCACCCAAGACATATGAAGCAAATGAAACCTCATCAACTGGAGGGTTTCAATTTTCTTGTTAGCAACTTAGTTGGTGATAATCCTGGTGGTTGCATCTTGGCCCATGCTCCAGGTTCTGGTAAAACATTTATGATAATTAGTTTCATGCAAAGTTTCCTAGCCAAGTATCCAAATGCTAGACCGCTGGTTGTTCTTCCTAAGGGAATATTGGATACATGGAAAAAGGAGTTTAAATATTGGCAAGTAGAAGATATTCCTTTATTTGACTTCTATGAGGCCAAAGCAGACAATCGGTCACAGCAGCTGGAGGTTTTGAAGAAGTGGGTAGATCAGAAGAGCATCCTGTTCTTAGGGTACAAACAGTTCTCCTCTATTGTTTGTGATCGAGAAACTAACCAGATATCAACTTCGTGCCAGGAGATATTGCTAAAGGCACCTTCAATTCTTATTATGGATGAAGGGCACACCCCTCGGAATGACAACACTGATGTATTCCAATCCATTGCAAAATTGCAGACACCTAGGAAAGTTGTACTTTCTGGAACTATTTATCAAAATCACGTGAAGGAAGTATTCAACATTCTGAATCTGGTTCGTCCTAAGTTTTTAAGATCAGAAACTTCCCGACCCATCATCAAGCGCATAATGAGTAGGGTAGATATAAAAGGTGCAAGGAAGCAGTTCAAAGCTGGTGCTGATAATGTTTTCTATGAACTAGTGGAGGATACTCTGCAGAGGGATACAGATTTCAGAAGGAAAGTGACTGTCATACATGACTTGCGTGAGATGACCAGCAAGGTCCTTCATTACTACAAAGGAGATTCTCTGGATGAGCTTCCTGGACTTGTTGATTTCACCGTGGTACTCAATCTAAGCGCCTGGCAGAAGCAGAAATTCCAGAAGGAATTCAAGAAGTTTGCAAGGAAGTTCAAGCAAAGTTCAGTTGGCAGTGCTGTTTATCTGCACCCAAAATTGTACTCCGTCTCCAAGGACTGGAAACCCTCTGATTCAAATGAAAAGATGGATGAGTTGATCGAGACGATAGACTTGAATGAAGGAATTAAGGCAAAATTCTTTTTCAATATGCTTAGGTTATGTGAGTCGTCTGGTGAGAAACTTTTGGTTTTCAGTCAGTACCTCCCACCTTTGAAATTTTTAGAGAGATTAACAGTCAAAACGAAGGGTTGGAGTCTCGGGAGAGAATTGTTTGTGATCACAGGGGATTCAAAGTCTGAGAATAGGGAGTGGTCCATGGAGAGATTTAACAATTCCCCTGATGCTAAGGTGTTTTTTGGCTCCATCAAGGCATGTGGAGAGGGTATATCTTTAGTAGGGGCTTCACGAGTAATAATTTTGGATGTTCATCTTAATCCCTCTGTGACCCGGCAAGCAATTGGCCGTGCATTTAGACCTGGTCAAAAGAAGAAAGTATTTGTATATAGATTGGTAGCTGCTGATTCCCCTGAAGAGGAAGATCATAGTACTTGCTTCCAAAAAGAATTAATTGCCAAAATGTGGTTTGAATGGAACGAATATTGTGGTTATCGGGATTTTGAAGTGGATACTGTTGATGTGAAAGATTGTGGTGATCTTTTTCTTGAAAGTCCAGTGTTGGGGGAAGATGTGAAGGTTCTGTACAGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

898

Amino Acids

102.05

Weight (kDa)

5.77

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	357 - 533	3.7e-10	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	361 - 664	1.6e-26	SNF2-related domain
Helicase_C	PF00271	711 - 822	4.2e-14	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17250
fragaria_vesca	FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780 FvH4_2g16780
malus_domestica	MD05G1138800.v1.1 MD10G1141700.v1.1 MD11G1014400.v1.1
prunus_persica	Prupe.8G180000_v2.0.a1
pyrus_communis	pycom10g12150
rosa_chinensis	RchiOBHm_Chr1g0336401 RchiOBHm_Chr6g0280901 RchiOBHm_Chr7g0239681
rosa_laevigata	RLG00000000928 RLG00000000950 RLG00000009676 RLG00000013018 RLG00000021242 RLG00000023914
rosa_multiflora	Rmu_sc0004772.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031900 Rroxscaffold_5G00366860 Rroxscaffold_7G00187510
rosa_rugosa	Rorug06G0049800 Rorug06G0136100
rosa_samantha	Rh1CG252200 Rh3BG154100 Rh3CG270200 Rh4AG229500 Rh6AG249000 Rh6BG250900 Rh6CG251700 Rh6DG243400 Rh7AG482800
rosa_wichuraiana	Rw6G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1483
AccB7I	CCANNNNNTGG	3 cut(s)	1166, 2043, 2565
AccI	GTMKAC	1 cut(s)	789
AciI	CCGC	2 cut(s)	871, 1232
AclWI	GGATC	3 cut(s)	182, 633, 668
AcoI	YGGCCR	1 cut(s)	2446
AcsI	RAATTY	4 cut(s)	1943, 1955, 2120, 2201
AcuI	CTGAAG	3 cut(s)	822, 1038, 2535
AcvI	CACGTG	1 cut(s)	1612
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	5 cut(s)	1166, 2043, 2518, 2565, 2663
AhdI	GACNNNNNGTC	1 cut(s)	1342
AhlI	ACTAGT	1 cut(s)	1765
AjnI	CCWGG	9 cut(s)	399, 528, 676, 1132, 1159, 1464, 1888, 1928, 2461
AluBI	AGCT	6 cut(s)	197, 392, 1354, 1739, 1885, 2501
AluI	AGCT	6 cut(s)	197, 392, 1354, 1739, 1885, 2501
Alw26I	GTCTC	4 cut(s)	989, 2038, 2081, 2246
AlwI	GGATC	3 cut(s)	182, 633, 668
AlwNI	CAGNNNCTG	2 cut(s)	1166, 1354
Ama87I	CYCGRG	1 cut(s)	2243
AoxI	GGCC	5 cut(s)	23, 512, 1149, 1326, 2446
ApeKI	GCWGC	3 cut(s)	455, 1351, 2501
ApoI	RAATTY	4 cut(s)	1943, 1955, 2120, 2201
AseI	ATTAAT	1 cut(s)	2552
Asp700I	GAANNNNTTC	3 cut(s)	1302, 1730, 1955
AspA2I	CCTAGG	1 cut(s)	1571
AspLEI	GCGC	2 cut(s)	1692, 1928
AspS9I	GGNCC	4 cut(s)	24, 1150, 1849, 2298
AsuC2I	CCSGG	2 cut(s)	27, 2434
AsuHPI	GGTGA	6 cut(s)	631, 1043, 1136, 1897, 2171, 2648
AvaI	CYCGRG	1 cut(s)	2243
AvaII	GGWCC	2 cut(s)	1849, 2298
AvrII	CCTAGG	1 cut(s)	1571
AxyI	CCTNAGG	1 cut(s)	1248
BaeGI	GKGCMC	1 cut(s)	1515
BanI	GGYRCC	1 cut(s)	1483
BarI	GAAGNNNNNNTAC	1 cut(s)	2669
BauI	CACGAG	1 cut(s)	2391
BbrPI	CACGTG	1 cut(s)	1612
BbsI	GAAGAC	2 cut(s)	78, 269
BbvI	GCAGC	3 cut(s)	467, 1363, 2488
BccI	CCATC	9 cut(s)	101, 559, 595, 719, 739, 1016, 1688, 2065, 2357
BceAI	ACGGC	2 cut(s)	38, 2433
BcgI	CGANNNNNNTGC	4 cut(s)	444, 478, 1502, 1536
BciT130I	CCWGG	9 cut(s)	401, 530, 678, 1134, 1161, 1466, 1890, 1930, 2463
BciVI	GTATCC	5 cut(s)	1227, 1255, 1768, 1783, 2605
BclI	TGATCA	1 cut(s)	2262
BcnI	CCSGG	2 cut(s)	27, 2434
BcoDI	GTCTC	4 cut(s)	989, 2038, 2081, 2246
BcuI	ACTAGT	1 cut(s)	1765
BfaI	CTAG	4 cut(s)	1208, 1227, 1572, 1766
BfmI	CTRYAG	3 cut(s)	168, 786, 1781
BfoI	RGCGCY	1 cut(s)	1929
BfuI	GTATCC	5 cut(s)	1227, 1255, 1768, 1783, 2605
BisI	GCNGC	4 cut(s)	456, 871, 1352, 2502
BlnI	CCTAGG	1 cut(s)	1571
BlsI	GCNGC	4 cut(s)	457, 872, 1353, 2503
BmcAI	AGTACT	2 cut(s)	291, 2533
Bme18I	GGWCC	2 cut(s)	1849, 2298
BmeRI	GACNNNNNGTC	1 cut(s)	1342
BmeT110I	CYCGRG	1 cut(s)	2243
BmgT120I	GGNCC	4 cut(s)	24, 1150, 1849, 2298
BmiI	GGNNCC	4 cut(s)	6, 369, 1485, 2347
BmsI	GCATC	6 cut(s)	467, 727, 882, 1152, 1398, 2317
BpiI	GAAGAC	2 cut(s)	78, 269
BpmI	CTGGAG	4 cut(s)	233, 1109, 1143, 1376
Bpu10I	CCTNAGC	2 cut(s)	2138, 2331
BpuMI	CCSGG	2 cut(s)	27, 2434
BsaAI	YACGTR	1 cut(s)	1612
BsaBI	GATNNNNATC	1 cut(s)	2412
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	7 cut(s)	60, 399, 1520, 1571, 1908, 2037, 2301
BsaXI	ACNNNNNCTCC	2 cut(s)	2018, 2048
Bsc4I	CCNNNNNNNGG	5 cut(s)	1166, 2043, 2518, 2565, 2663
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	3 cut(s)	1092, 2048, 2657
Bse21I	CCTNAGG	1 cut(s)	1248
Bse3DI	GCAATG	1 cut(s)	1551
Bse8I	GATNNNNATC	1 cut(s)	2412
BseBI	CCWGG	9 cut(s)	401, 530, 678, 1134, 1161, 1466, 1890, 1930, 2463
BseDI	CCNNGG	7 cut(s)	60, 399, 1520, 1571, 1908, 2037, 2301
BseGI	GGATG	9 cut(s)	433, 574, 750, 784, 1389, 1510, 1885, 2080, 2413
BseJI	GATNNNNATC	1 cut(s)	2412
BseLI	CCNNNNNNNGG	5 cut(s)	1166, 2043, 2518, 2565, 2663
BseMI	GCAATG	1 cut(s)	1551
BseMII	CTCAG	2 cut(s)	984, 2274
BseNI	ACTGG	3 cut(s)	1092, 2048, 2657
BseRI	GAGGAG	1 cut(s)	1408
BseSI	GKGCMC	1 cut(s)	1515
BseXI	GCAGC	3 cut(s)	467, 1363, 2488
BsgI	GTGCAG	1 cut(s)	1997
BshFI	GGCC	5 cut(s)	25, 514, 1151, 1328, 2448
BshNI	GGYRCC	1 cut(s)	1483
BsiHKCI	CYCGRG	1 cut(s)	2243
BsiSI	CCGG	4 cut(s)	8, 27, 452, 2434
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	5 cut(s)	1166, 2043, 2518, 2565, 2663
BsmAI	GTCTC	4 cut(s)	989, 2038, 2081, 2246
BsmBI	CGTCTC	3 cut(s)	989, 2038, 2081
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	5 cut(s)	25, 514, 1151, 1328, 2448
BsoBI	CYCGRG	1 cut(s)	2243
Bsp1286I	GDGCHC	1 cut(s)	1515
Bsp1407I	TGTACA	2 cut(s)	145, 2685
Bsp19I	CCATGG	1 cut(s)	2301
BspACI	CCGC	2 cut(s)	871, 1232
BspANI	GGCC	5 cut(s)	25, 514, 1151, 1328, 2448
BspCNI	CTCAG	2 cut(s)	985, 2275
BspLI	GGNNCC	4 cut(s)	6, 369, 1485, 2347
BspMAI	CTGCAG	2 cut(s)	172, 1785
BspPI	GGATC	3 cut(s)	182, 633, 668
BspQI	GCTCTTC	1 cut(s)	1379
BspT107I	GGYRCC	1 cut(s)	1483
BsrDI	GCAATG	1 cut(s)	1551
BsrFI	RCCGGY	1 cut(s)	7
BsrGI	TGTACA	2 cut(s)	145, 2685
BsrI	ACTGG	3 cut(s)	1092, 2048, 2657
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	7 cut(s)	60, 399, 1520, 1571, 1908, 2037, 2301
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	2391
BssT1I	CCWWGG	4 cut(s)	60, 1571, 2037, 2301
Bst2BI	CACGAG	1 cut(s)	2391
Bst2UI	CCWGG	9 cut(s)	401, 530, 678, 1134, 1161, 1466, 1890, 1930, 2463
Bst6I	CTCTTC	2 cut(s)	1379, 2511
BstACI	GRCGYC	1 cut(s)	36
BstAUI	TGTACA	2 cut(s)	145, 2685
BstBAI	YACGTR	1 cut(s)	1612
BstC8I	GCNNGC	3 cut(s)	9, 306, 2439
BstDEI	CTNAG	9 cut(s)	993, 1117, 1248, 1399, 1650, 1922, 2138, 2283, 2331
BstDSI	CCRYGG	2 cut(s)	1908, 2301
BstF5I	GGATG	9 cut(s)	433, 574, 750, 784, 1389, 1510, 1885, 2080, 2413
BstH2I	RGCGCY	1 cut(s)	1929
BstHHI	GCGC	2 cut(s)	1692, 1928
BstMAI	GTCTC	4 cut(s)	989, 2038, 2081, 2246
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	9 cut(s)	401, 530, 678, 1134, 1161, 1466, 1890, 1930, 2463
BstNSI	RCATGY	2 cut(s)	958, 2361
BstSFI	CTRYAG	3 cut(s)	168, 786, 1781
BstSLI	GKGCMC	1 cut(s)	1515
BstV1I	GCAGC	3 cut(s)	467, 1363, 2488
BstV2I	GAAGAC	2 cut(s)	78, 269
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
Bsu36I	CCTNAGG	1 cut(s)	1248
BsuI	GTATCC	5 cut(s)	1227, 1255, 1768, 1783, 2605
BsuRI	GGCC	5 cut(s)	25, 514, 1151, 1328, 2448
BtgI	CCRYGG	2 cut(s)	1908, 2301
BtgZI	GCGATG	1 cut(s)	447
BtsCI	GGATG	9 cut(s)	433, 574, 750, 784, 1389, 1510, 1885, 2080, 2413
BtsI	GCAGTG	2 cut(s)	18, 2005
BtsIMutI	CAGTG	7 cut(s)	18, 183, 235, 783, 1533, 2005, 2664
Cac8I	GCNNGC	3 cut(s)	9, 306, 2439
CaiI	CAGNNNCTG	2 cut(s)	1166, 1354
CfoI	GCGC	2 cut(s)	1692, 1928
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	24, 1150, 1849, 2298
CseI	GACGC	1 cut(s)	44
CsiI	ACCWGGT	1 cut(s)	2461
CspCI	CAANNNNNGTGG	2 cut(s)	2341, 2376
DdeI	CTNAG	9 cut(s)	993, 1117, 1248, 1399, 1650, 1922, 2138, 2283, 2331
DraI	TTTAAA	2 cut(s)	340, 1282
DriI	GACNNNNNGTC	1 cut(s)	1342
EaeI	YGGCCR	1 cut(s)	2446
Eam1104I	CTCTTC	2 cut(s)	1379, 2511
Eam1105I	GACNNNNNGTC	1 cut(s)	1342
EarI	CTCTTC	2 cut(s)	1379, 2511
Eco130I	CCWWGG	4 cut(s)	60, 1571, 2037, 2301
Eco147I	AGGCCT	1 cut(s)	514
Eco32I	GATATC	1 cut(s)	1452
Eco47I	GGWCC	2 cut(s)	1849, 2298
Eco57I	CTGAAG	3 cut(s)	822, 1038, 2535
Eco72I	CACGTG	1 cut(s)	1612
Eco81I	CCTNAGG	1 cut(s)	1248
Eco88I	CYCGRG	1 cut(s)	2243
EcoO109I	RGGNCCY	1 cut(s)	1849
EcoRI	GAATTC	1 cut(s)	1955
EcoRII	CCWGG	9 cut(s)	399, 528, 676, 1132, 1159, 1464, 1888, 1928, 2461
EcoRV	GATATC	1 cut(s)	1452
EcoT14I	CCWWGG	4 cut(s)	60, 1571, 2037, 2301
EcoT22I	ATGCAT	3 cut(s)	135, 334, 742
ErhI	CCWWGG	4 cut(s)	60, 1571, 2037, 2301
Esp3I	CGTCTC	3 cut(s)	989, 2038, 2081
FalI	AAGNNNNNCTT	4 cut(s)	840, 872, 1569, 1601
FaqI	GGGAC	1 cut(s)	382
FauNDI	CATATG	1 cut(s)	1062
FbaI	TGATCA	1 cut(s)	2262
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	4 cut(s)	456, 871, 1352, 2502
FokI	GGATG	9 cut(s)	440, 581, 757, 791, 1376, 1517, 1892, 2087, 2420
Fsp4HI	GCNGC	4 cut(s)	456, 871, 1352, 2502
FspBI	CTAG	4 cut(s)	1208, 1227, 1572, 1766
GlaI	GCGC	2 cut(s)	1691, 1927
GluI	GCNGC	4 cut(s)	456, 871, 1352, 2502
GsuI	CTGGAG	4 cut(s)	233, 1109, 1143, 1376
HaeII	RGCGCY	1 cut(s)	1929
HaeIII	GGCC	5 cut(s)	25, 514, 1151, 1328, 2448
HapII	CCGG	4 cut(s)	8, 27, 452, 2434
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	1692, 1928
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	2 cut(s)	1690, 1926
HinP1I	GCGC	2 cut(s)	1690, 1926
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HpaII	CCGG	4 cut(s)	8, 27, 452, 2434
HphI	GGTGA	6 cut(s)	631, 1043, 1136, 1897, 2171, 2648
Hpy166II	GTNNAC	2 cut(s)	442, 790
Hpy8I	GTNNAC	2 cut(s)	442, 790
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4IV	ACGT	2 cut(s)	950, 1611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	9 cut(s)	993, 1117, 1248, 1399, 1650, 1922, 2138, 2283, 2331
HpySE526I	ACGT	2 cut(s)	950, 1611
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	2 cut(s)	1690, 1926
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	2262
LguI	GCTCTTC	1 cut(s)	1379
LmnI	GCTCC	6 cut(s)	4, 373, 397, 454, 1162, 2351
Lsp1109I	GCAGC	3 cut(s)	467, 1363, 2488
LweI	GCATC	6 cut(s)	467, 727, 882, 1152, 1398, 2317
MabI	ACCWGGT	1 cut(s)	2461
MaeI	CTAG	4 cut(s)	1208, 1227, 1572, 1766
MaeII	ACGT	2 cut(s)	950, 1611
MaeIII	GTNAC	4 cut(s)	781, 1344, 1810, 2428
MfeI	CAATTG	2 cut(s)	362, 2442
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	1 cut(s)	1515
MlyI	GAGTC	2 cut(s)	2159, 2248
MmeI	TCCRAC	1 cut(s)	2216
Mph1103I	ATGCAT	3 cut(s)	135, 334, 742
MroNI	GCCGGC	1 cut(s)	7
MroXI	GAANNNNTTC	3 cut(s)	1302, 1730, 1955
MspA1I	CMGCKG	2 cut(s)	1234, 1354
MspI	CCGG	4 cut(s)	8, 27, 452, 2434
MunI	CAATTG	2 cut(s)	362, 2442
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	9 cut(s)	401, 530, 678, 1134, 1161, 1466, 1890, 1930, 2463
MwoI	GCNNNNNNNGC	1 cut(s)	455
NaeI	GCCGGC	1 cut(s)	9
NciI	CCSGG	2 cut(s)	27, 2434
NcoI	CCATGG	1 cut(s)	2301
NdeI	CATATG	1 cut(s)	1062
NgoMIV	GCCGGC	1 cut(s)	7
NlaIV	GGNNCC	4 cut(s)	6, 369, 1485, 2347
NmuCI	GTSAC	4 cut(s)	781, 1344, 1810, 2428
NsiI	ATGCAT	3 cut(s)	135, 334, 742
NspI	RCATGY	2 cut(s)	958, 2361
PceI	AGGCCT	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	1379
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	832
PdiI	GCCGGC	1 cut(s)	9
PdmI	GAANNNNTTC	3 cut(s)	1302, 1730, 1955
PfeI	GAWTC	9 cut(s)	482, 767, 962, 986, 1636, 1871, 2057, 2273, 2507
PflFI	GACNNNGTC	1 cut(s)	2463
PflMI	CCANNNNNTGG	3 cut(s)	1166, 2043, 2565
PfoI	TCCNGGA	2 cut(s)	528, 1888
PkrI	GCNGC	4 cut(s)	457, 872, 1353, 2503
PleI	GAGTC	2 cut(s)	2158, 2247
PmaCI	CACGTG	1 cut(s)	1612
PmlI	CACGTG	1 cut(s)	1612
PpsI	GAGTC	2 cut(s)	2158, 2247
Ppu21I	YACGTR	1 cut(s)	1612
PpuMI	RGGWCCY	1 cut(s)	1849
PshBI	ATTAAT	1 cut(s)	2552
Psp5II	RGGWCCY	1 cut(s)	1849
Psp6I	CCWGG	9 cut(s)	399, 528, 676, 1132, 1159, 1464, 1888, 1928, 2461
PspCI	CACGTG	1 cut(s)	1612
PspGI	CCWGG	9 cut(s)	399, 528, 676, 1132, 1159, 1464, 1888, 1928, 2461
PspN4I	GGNNCC	4 cut(s)	6, 369, 1485, 2347
PspPI	GGNCC	4 cut(s)	24, 1150, 1849, 2298
PspPPI	RGGWCCY	1 cut(s)	1849
PsrI	GAACNNNNNNTAC	2 cut(s)	1397, 1429
PstI	CTGCAG	2 cut(s)	172, 1785
PstNI	CAGNNNCTG	2 cut(s)	1166, 1354
PsuI	RGATCY	1 cut(s)	673
PsyI	GACNNNGTC	1 cut(s)	2463
PvuII	CAGCTG	1 cut(s)	1354
SapI	GCTCTTC	1 cut(s)	1379
SatI	GCNGC	4 cut(s)	456, 871, 1352, 2502
Sau96I	GGNCC	4 cut(s)	24, 1150, 1849, 2298
ScaI	AGTACT	2 cut(s)	291, 2533
SchI	GAGTC	2 cut(s)	2159, 2248
SduI	GDGCHC	1 cut(s)	1515
SexAI	ACCWGGT	1 cut(s)	2461
SfaNI	GCATC	6 cut(s)	467, 727, 882, 1152, 1398, 2317
SfcI	CTRYAG	3 cut(s)	168, 786, 1781
SinI	GGWCC	2 cut(s)	1849, 2298
SpeI	ACTAGT	1 cut(s)	1765
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	2 cut(s)	871, 1232
SspI	AATATT	4 cut(s)	909, 1257, 1286, 2585
SspMI	CTAG	4 cut(s)	1208, 1227, 1572, 1766
StuI	AGGCCT	1 cut(s)	514
StyI	CCWWGG	4 cut(s)	60, 1571, 2037, 2301
TaiI	ACGT	2 cut(s)	953, 1614
TaqI	TCGA	4 cut(s)	177, 628, 1435, 2085
TaqII	GACCGA	1 cut(s)	1332
TatI	WGTACW	7 cut(s)	145, 289, 941, 1582, 2025, 2531, 2685
TauI	GCSGC	1 cut(s)	873
TfiI	GAWTC	9 cut(s)	482, 767, 962, 986, 1636, 1871, 2057, 2273, 2507
TscAI	CASTG	7 cut(s)	18, 190, 235, 790, 1540, 2005, 2664
TseFI	GTSAC	4 cut(s)	781, 1344, 1810, 2428
TseI	GCWGC	3 cut(s)	455, 1351, 2501
Tsp45I	GTSAC	4 cut(s)	781, 1344, 1810, 2428
TspGWI	ACGGA	3 cut(s)	180, 384, 2020
TspRI	CASTG	7 cut(s)	18, 190, 235, 790, 1540, 2005, 2664
Tth111I	GACNNNGTC	1 cut(s)	2463
Van91I	CCANNNNNTGG	3 cut(s)	1166, 2043, 2565
VpaK11BI	GGWCC	2 cut(s)	1849, 2298
VspI	ATTAAT	1 cut(s)	2552
XapI	RAATTY	4 cut(s)	1943, 1955, 2120, 2201
XceI	RCATGY	2 cut(s)	958, 2361
XmaJI	CCTAGG	1 cut(s)	1571
XmiI	GTMKAC	1 cut(s)	789
XmnI	GAANNNNTTC	3 cut(s)	1302, 1730, 1955
XspI	CTAG	4 cut(s)	1208, 1227, 1572, 1766
ZrmI	AGTACT	2 cut(s)	291, 2533
Zsp2I	ATGCAT	3 cut(s)	135, 334, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.