Rh3BG154100
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003349
Physical Location & Seq
Reverse (-)
13122629 .. 13125490
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG154100.1

Sequence Viewer

Length: 261 bp
ATGCGGGGTCCCCATCGCTCTGAGCGCAAGGACGACGACCCCGAGTTCATATACAGCACTTGGCTCTGGTCCAAGTTTGACGAGCTCGTCGAGTCCCTCATCCAGCTCATTCTTTTGCCGGAATCTGATGAAACTCTCAAGGTTCATGCCTTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGCGACCTTGGAATTAAAGCAGTATCCCACTTTAAGATTGGAAGTTGGGAATGCAAGATTTGAATCGCTGATAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

86

Amino Acids

10.05

Weight (kDa)

5.1

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AciI CCGC 1 cut(s) 4
AgsI TTSAA 3 cut(s) 157, 181, 245
AluBI AGCT 3 cut(s) 85, 106, 163
AluI AGCT 3 cut(s) 85, 106, 163
Alw21I GWGCWC 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 2 cut(s) 8, 69
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 2 cut(s) 8, 69
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 87
BccI CCATC 1 cut(s) 21
BciVI GTATCC 1 cut(s) 216
BfuI GTATCC 1 cut(s) 216
Bme18I GGWCC 2 cut(s) 8, 69
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 2 cut(s) 8, 69
BmiI GGNNCC 2 cut(s) 9, 10
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 244
BseMII CTCAG 2 cut(s) 12, 182
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 1 cut(s) 4
BspCNI CTCAG 2 cut(s) 13, 181
BspLI GGNNCC 2 cut(s) 9, 10
BssECI CCNNGG 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 21, 168
BstF5I GGATG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 24
BsuI GTATCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 8, 69
CviAII CATG 1 cut(s) 146
CviJI RGCY 5 cut(s) 64, 85, 106, 163, 167
CviKI_1 RGCY 5 cut(s) 64, 85, 106, 163, 167
DdeI CTNAG 2 cut(s) 21, 168
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 8, 69
Eco53kI GAGCTC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 41
EcoICRI GAGCTC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 50, 52, 147
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 145
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 87
GlaI GCGC 1 cut(s) 26
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 27
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 3 cut(s) 92, 122, 245
HpaII CCGG 1 cut(s) 119
Hpy188I TCNGA 3 cut(s) 22, 127, 171
Hpy99I CGWCG 2 cut(s) 38, 92
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 2 cut(s) 21, 168
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 1 cut(s) 25
KflI GGGWCCC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 52, 116, 132, 149
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 194
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 2 cut(s) 197, 215
MspI CCGG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 24
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 2 cut(s) 9, 10
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 87
PctI GAATGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 122, 245
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 9, 10
PspPI GGNCC 2 cut(s) 8, 69
PspPPI RGGWCCY 1 cut(s) 8
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 197, 215
Sau96I GGNCC 2 cut(s) 8, 69
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 87
SetI ASST 5 cut(s) 87, 108, 144, 165, 191
SinI GGWCC 2 cut(s) 8, 69
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 87
StyI CCWWGG 1 cut(s) 189
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 194
TfiI GAWTC 2 cut(s) 122, 245
Tru1I TTAA 2 cut(s) 197, 215
Tru9I TTAA 2 cut(s) 197, 215
TspDTI ATGAA 3 cut(s) 37, 134, 144
VpaK11BI GGWCC 2 cut(s) 8, 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.