Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Reverse (-)

29540629 .. 29541180

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002206

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTCGGCGAAACACTCGGTGCGAGCTAGGGTCAGGGTTCTTGGAGTACTTGGATTTTTTGCCTGGAATTGAAGGGCTTGAGGGAGAAGAAAGGGTGCCTATAGATTTGAATGTTGCTTCGGCATCGAAGAAGGAGTTTTCAGCAGCGATGGTGGCGATTCTGGTGGAGGAGTCGAAGCGGCGCTTGCGGCGGACGTCATCCTCGATTTCTTGCTGGGAGCGGCGGCTGGTTGAATTCATCGTGGATGGGCGGTTCTGGAGGGAGTTGTGGGCCGAGTTTAGGTTCACCGGTGGAGCGAAAATGTGGCACAAAGTCGAGGGAGATAGACATAGCGCTTTGTCCTTGAATTCTTCGTCAAAGAATTACTATGAGAAGAACAAGGGGGAGGCAGAGGAGGAGCCGTCGCGGGCGGTGGCTGCTGTTATTTTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.64

Weight (kDa)

6.76

Isoelectric Point (pI)

63.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	223
AccII	CGCG	1 cut(s)	409
AciI	CCGC	8 cut(s)	181, 190, 193, 223, 226, 253, 409, 413
AcsI	RAATTY	2 cut(s)	236, 349
AcyI	GRCGYC	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	50
AfeI	AGCGCT	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgeI	ACCGGT	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	74, 112, 236, 349
AjnI	CCWGG	1 cut(s)	64
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	146, 419
ApoI	RAATTY	2 cut(s)	236, 349
AsiGI	ACCGGT	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	186, 338
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	158, 406
BccI	CCATC	2 cut(s)	145, 242
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	66
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	2 cut(s)	187, 339
BisI	GCNGC	6 cut(s)	147, 182, 191, 224, 227, 420
BlsI	GCNGC	6 cut(s)	148, 183, 192, 225, 228, 421
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	99, 402
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	200, 253
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseRI	GAGGAG	3 cut(s)	185, 410, 413
BseXI	GCAGC	2 cut(s)	158, 406
BseYI	CCCAGC	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	97
BshTI	ACCGGT	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	282
BsnI	GGCC	1 cut(s)	275
BspACI	CCGC	8 cut(s)	181, 190, 193, 223, 226, 253, 409, 413
BspANI	GGCC	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	99, 402
BspT107I	GGYRCC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssNI	GRCGYC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	66
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	26, 188, 411
BstF5I	GGATG	2 cut(s)	200, 253
BstFNI	CGCG	1 cut(s)	409
BstH2I	RGCGCY	2 cut(s)	187, 339
BstHHI	GCGC	2 cut(s)	186, 338
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 187, 190, 419
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	158, 406
BsuRI	GGCC	1 cut(s)	275
BtgZI	GCGATG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	200, 253
Cac8I	GCNNGC	3 cut(s)	26, 188, 411
CfoI	GCGC	2 cut(s)	186, 338
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	49
CspAI	ACCGGT	1 cut(s)	290
CviJI	RGCY	6 cut(s)	28, 79, 229, 275, 403, 419
CviKI_1	RGCY	6 cut(s)	28, 79, 229, 275, 403, 419
CviQI	GTAC	1 cut(s)	49
DraIII	CACNNNGTG	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	208
Eco47III	AGCGCT	1 cut(s)	337
EcoRI	GAATTC	2 cut(s)	236, 349
EcoRII	CCWGG	1 cut(s)	64
FaiI	YATR	3 cut(s)	104, 333, 372
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FauI	CCCGC	1 cut(s)	402
Fnu4HI	GCNGC	6 cut(s)	147, 182, 191, 224, 227, 420
FokI	GGATG	2 cut(s)	187, 260
Fsp4HI	GCNGC	6 cut(s)	147, 182, 191, 224, 227, 420
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	2 cut(s)	185, 337
GluI	GCNGC	6 cut(s)	147, 182, 191, 224, 227, 420
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	280
HaeII	RGCGCY	2 cut(s)	187, 339
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	2 cut(s)	186, 338
Hin1I	GRCGYC	1 cut(s)	197
Hin6I	GCGC	2 cut(s)	184, 336
HinP1I	GCGC	2 cut(s)	184, 336
HinfI	GANTC	3 cut(s)	4, 160, 173
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	68, 127
HpyCH4IV	ACGT	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 187, 190, 419
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	197
HspAI	GCGC	2 cut(s)	184, 336
LmnI	GCTCC	3 cut(s)	220, 296, 400
LpnPI	CCDG	8 cut(s)	21, 51, 78, 149, 202, 215, 244, 304
Lsp1109I	GCAGC	2 cut(s)	158, 406
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	197
MbiI	CCGCTC	1 cut(s)	223
MboII	GAAGA	4 cut(s)	101, 142, 345, 388
MluCI	AATT	4 cut(s)	69, 236, 349, 364
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	8 cut(s)	76, 163, 214, 255, 313, 382, 388, 391
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	4 cut(s)	155, 187, 190, 419
NlaIV	GGNNCC	2 cut(s)	99, 402
NmeAIII	GCCGAG	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	160
PinAI	ACCGGT	1 cut(s)	290
PkrI	GCNGC	6 cut(s)	148, 183, 192, 225, 228, 421
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	99, 402
PspPI	GGNCC	1 cut(s)	273
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SatI	GCNGC	6 cut(s)	147, 182, 191, 224, 227, 420
Sau96I	GGNCC	1 cut(s)	273
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	3 cut(s)	30, 200, 287
SfaNI	GCATC	1 cut(s)	134
SfcI	CTRYAG	1 cut(s)	102
SgrAI	CRCCGGYG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	69, 236, 349, 364
SsiI	CCGC	8 cut(s)	181, 190, 193, 223, 226, 253, 409, 413
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	64
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	4 cut(s)	128, 176, 206, 318
TasI	AATT	4 cut(s)	69, 236, 349, 364
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	4 cut(s)	184, 193, 226, 229
TfiI	GAWTC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	146, 419
TspDTI	ATGAA	1 cut(s)	229
XapI	RAATTY	2 cut(s)	236, 349
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.