Rh7DG138800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005941
Physical Location & Seq
Forward (+)
11780016 .. 11780306
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG138800.1

Sequence Viewer

Length: 291 bp
ATGGATTTGAATGTTGCTTTGGCGTCGAAAGAGGAGTCGCCCGTAGCGATGGTGGCTATTCTGGTGGCGGAGTCGAGGCGGCGCTCGCGGCGGACGTCATCCTCGATTTCTTGCTGGGCACTACGGCTTCTCGGCGTTGGCATTGTTCCACCGCGGGAATCAGACCTCCGTGAGTGGGCTGTTCTGGAGTTGGTTGTGGGCCGGGTTTGGGTTCACCGGTGGCGCGAAAATGGGGCAATCGAAGAAGCAGCAATCGAGAGAGATAGAGATAGCGCTTTGTCCTTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.76

Weight (kDa)

6.59

Isoelectric Point (pI)

79.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 98
AccII CGCG 3 cut(s) 88, 154, 225
AciI CCGC 6 cut(s) 68, 79, 88, 91, 152, 154
AcyI GRCGYC 2 cut(s) 23, 95
AfeI AGCGCT 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 175, 208
AgeI ACCGGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 10
AjuI GAANNNNNNNTTGG 1 cut(s) 34
Aor51HI AGCGCT 1 cut(s) 274
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AsiGI ACCGGT 1 cut(s) 216
AspLEI GCGC 3 cut(s) 84, 225, 275
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 140
BcnI CCSGG 1 cut(s) 203
BfoI RGCGCY 2 cut(s) 85, 276
BisI GCNGC 3 cut(s) 80, 89, 249
BlsI GCNGC 3 cut(s) 81, 90, 250
Bme1390I CCNGG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 203
BsaHI GRCGYC 2 cut(s) 23, 95
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 208
Bse118I RCCGGY 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 175, 208
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 114
Bsh1236I CGCG 3 cut(s) 88, 154, 225
BshFI GGCC 1 cut(s) 201
BshTI ACCGGT 1 cut(s) 216
BsiSI CCGG 2 cut(s) 202, 217
BslI CCNNNNNNNGG 2 cut(s) 175, 208
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 121
BspACI CCGC 6 cut(s) 68, 79, 88, 91, 152, 154
BspANI GGCC 1 cut(s) 201
BspFNI CGCG 3 cut(s) 88, 154, 225
BsrFI RCCGGY 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 152
BssNI GRCGYC 2 cut(s) 23, 95
BstACI GRCGYC 2 cut(s) 23, 95
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 283
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 98
BstFNI CGCG 3 cut(s) 88, 154, 225
BstH2I RGCGCY 2 cut(s) 85, 276
BstHHI GCGC 3 cut(s) 84, 225, 275
BstMWI GCNNNNNNNGC 3 cut(s) 53, 85, 88
BstSCI CCNGG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 121
BstUI CGCG 3 cut(s) 88, 154, 225
BstV1I GCAGC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 3 cut(s) 84, 225, 275
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 199
Cfr42I CCGCGG 1 cut(s) 155
CseI GACGC 1 cut(s) 12
CspAI ACCGGT 1 cut(s) 216
CviJI RGCY 4 cut(s) 56, 127, 179, 201
CviKI_1 RGCY 4 cut(s) 56, 127, 179, 201
DdeI CTNAG 1 cut(s) 283
EciI GGCGGA 2 cut(s) 83, 106
Eco47III AGCGCT 1 cut(s) 274
FauI CCCGC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 80, 89, 249
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 3 cut(s) 80, 89, 249
GlaI GCGC 3 cut(s) 83, 224, 274
GluI GCNGC 3 cut(s) 80, 89, 249
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 2 cut(s) 85, 276
HaeIII GGCC 1 cut(s) 201
HapII CCGG 2 cut(s) 202, 217
HgaI GACGC 1 cut(s) 12
HhaI GCGC 3 cut(s) 84, 225, 275
Hin1I GRCGYC 2 cut(s) 23, 95
Hin6I GCGC 3 cut(s) 82, 223, 273
HinP1I GCGC 3 cut(s) 82, 223, 273
HinfI GANTC 3 cut(s) 35, 71, 158
HpaII CCGG 2 cut(s) 202, 217
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 185, 256
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 85, 88
HpyF3I CTNAG 1 cut(s) 283
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 2 cut(s) 23, 95
HspAI GCGC 3 cut(s) 82, 223, 273
KspI CCGCGG 1 cut(s) 155
LpnPI CCDG 5 cut(s) 47, 100, 170, 215, 230
Lsp1109I GCAGC 1 cut(s) 260
MaeII ACGT 1 cut(s) 95
MboII GAAGA 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 121
MlyI GAGTC 2 cut(s) 44, 80
MnlI CCTC 4 cut(s) 25, 69, 112, 176
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 2 cut(s) 202, 217
MspR9I CCNGG 1 cut(s) 203
MvnI CGCG 3 cut(s) 88, 154, 225
MwoI GCNNNNNNNGC 3 cut(s) 53, 85, 88
NciI CCSGG 1 cut(s) 203
NmeAIII GCCGAG 1 cut(s) 111
PcsI WCGNNNNNNNCGW 3 cut(s) 44, 92, 101
PfeI GAWTC 1 cut(s) 158
PinAI ACCGGT 1 cut(s) 216
PkrI GCNGC 3 cut(s) 81, 90, 250
PleI GAGTC 2 cut(s) 43, 79
PpsI GAGTC 2 cut(s) 43, 79
PspFI CCCAGC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 199
SacII CCGCGG 1 cut(s) 155
SatI GCNGC 3 cut(s) 80, 89, 249
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 44, 80
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 121
SetI ASST 2 cut(s) 98, 168
Sfr303I CCGCGG 1 cut(s) 155
SgrAI CRCCGGYG 1 cut(s) 216
SgrBI CCGCGG 1 cut(s) 155
SsiI CCGC 6 cut(s) 68, 79, 88, 91, 152, 154
StyD4I CCNGG 1 cut(s) 201
TaiI ACGT 1 cut(s) 98
TaqI TCGA 5 cut(s) 26, 74, 104, 240, 255
TauI GCSGC 2 cut(s) 82, 91
TfiI GAWTC 1 cut(s) 158
TseI GCWGC 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 158
ZraI GACGTC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.