Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028447.1

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3316

Gene Structure 3316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028447.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggagcttcggtggccgatagaagctacggtggctcgtggggagctgcgatggcttggtcagtcatctcactccctcagcctctctaagctagctcctattcgtaatctcgaaccgctgaaccgccgacccacggctttgcttcgacccactggtgtggctatcactcaagaaaattcattattagacaacactgctagaattgagggctggttagctagattcccaatgtttgactgggttgggggaagaacatctgaaatgtctgcagttggtcttcttccagcagcgcttcagggaattgacacattgctgaagtttctgaatcataatgtcagagtatctgttaagaataatcctgccgccttgcttgctttatgctggtattgggctactgatggattgggatccaaggatatggttgttcttccttacatggacagcctattattatttagtcggtatttgcagcagttggtcatggaatctattgggaaagaatttgaccttgatagtaatcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

174

Amino Acids

19.54

Weight (kDa)

7.9

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	116, 124, 363
AclWI	GGATC	2 cut(s)	402, 415
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	175, 500
AcuI	CTGAAG	2 cut(s)	278, 335
AfeI	AGCGCT	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	133
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	6 cut(s)	7, 26, 46, 91, 95, 218
AluI	AGCT	6 cut(s)	7, 26, 46, 91, 95, 218
AlwI	GGATC	2 cut(s)	402, 415
Aor51HI	AGCGCT	1 cut(s)	291
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	46, 287, 469
ApoI	RAATTY	2 cut(s)	175, 500
AspLEI	GCGC	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	407
BauI	CACGAG	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	269
BbvCI	CCTCAGC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	33, 299, 481
BccI	CCATC	2 cut(s)	45, 392
BceAI	ACGGC	1 cut(s)	150
BfaI	CTAG	3 cut(s)	92, 198, 219
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	4 cut(s)	47, 288, 363, 470
BlsI	GCNGC	4 cut(s)	48, 289, 364, 471
BmiI	GGNNCC	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	247
BmtI	GCTAGC	1 cut(s)	95
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	153
BsaBI	GATNNNNATC	2 cut(s)	406, 516
BsaJI	CCNNGG	2 cut(s)	132, 411
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	157, 242
Bse3DI	GCAATG	1 cut(s)	308
Bse8I	GATNNNNATC	2 cut(s)	406, 516
BseDI	CCNNGG	2 cut(s)	132, 411
BseJI	GATNNNNATC	2 cut(s)	406, 516
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	2 cut(s)	157, 242
BseXI	GCAGC	3 cut(s)	33, 299, 481
BshFI	GGCC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	133
BsnI	GGCC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	407
BspACI	CCGC	3 cut(s)	116, 124, 363
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	271
BspOI	GCTAGC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	402, 415
BsrDI	GCAATG	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	157, 242
BssECI	CCNNGG	2 cut(s)	132, 411
BssMI	GATC	1 cut(s)	407
BssSI	CACGAG	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	93, 372
BstDEI	CTNAG	2 cut(s)	77, 87
BstDSI	CCRYGG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	1 cut(s)	410
BstMBI	GATC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 32, 52, 371
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	33, 299, 481
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	407
BstXI	CCANNNNNNTGG	2 cut(s)	157, 418
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	150, 192
Cac8I	GCNNGC	2 cut(s)	93, 372
CfoI	GCGC	1 cut(s)	292
CviAII	CATG	2 cut(s)	436, 481
DdeI	CTNAG	2 cut(s)	77, 87
DpnI	GATC	1 cut(s)	409
DpnII	GATC	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	411
Eco47III	AGCGCT	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	278, 335
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	2 cut(s)	439, 484
FaiI	YATR	5 cut(s)	330, 379, 419, 437, 482
FatI	CATG	2 cut(s)	435, 480
Fnu4HI	GCNGC	4 cut(s)	47, 288, 363, 470
Fsp4HI	GCNGC	4 cut(s)	47, 288, 363, 470
FspBI	CTAG	3 cut(s)	92, 198, 219
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	4 cut(s)	47, 288, 363, 470
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	439, 484
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	3 cut(s)	222, 325, 485
Hpy188I	TCNGA	3 cut(s)	259, 324, 338
Hpy188III	TCNNGA	2 cut(s)	110, 170
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	269, 469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 32, 52, 371
HpyF3I	CTNAG	2 cut(s)	77, 87
Hsp92II	CATG	2 cut(s)	439, 484
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	407
LmnI	GCTCC	3 cut(s)	4, 43, 100
LpnPI	CCDG	7 cut(s)	138, 196, 223, 281, 297, 367, 372
Lsp1109I	GCAGC	3 cut(s)	33, 299, 481
MaeI	CTAG	3 cut(s)	92, 198, 219
MalI	GATC	1 cut(s)	409
MboI	GATC	1 cut(s)	407
MboII	GAAGA	4 cut(s)	261, 269, 272, 419
MflI	RGATCY	1 cut(s)	407
MluCI	AATT	4 cut(s)	175, 201, 300, 500
MnlI	CCTC	3 cut(s)	86, 92, 199
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	13, 32, 52, 371
NdeII	GATC	1 cut(s)	407
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	439, 484
NlaIV	GGNNCC	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	222, 325, 485
PkrI	GCNGC	4 cut(s)	48, 289, 364, 471
PspN4I	GGNNCC	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	4 cut(s)	47, 288, 363, 470
Sau3AI	GATC	1 cut(s)	407
SetI	ASST	7 cut(s)	9, 28, 48, 93, 97, 220, 510
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	4 cut(s)	175, 201, 300, 500
SsiI	CCGC	3 cut(s)	116, 124, 363
SspMI	CTAG	3 cut(s)	92, 198, 219
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	111, 145
TasI	AATT	4 cut(s)	175, 201, 300, 500
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	3 cut(s)	222, 325, 485
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	157, 199
TseI	GCWGC	3 cut(s)	46, 287, 469
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	2 cut(s)	157, 199
XapI	RAATTY	2 cut(s)	175, 500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XspI	CTAG	3 cut(s)	92, 198, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.