Rh1DG239100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005941
Physical Location & Seq
Reverse (-)
45351836 .. 45352153
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG239100.1

Sequence Viewer

Length: 318 bp
ATGCCCATTTCACAAAGAGAGCCCGTCGTCGCCGACGGAGATGTTGGCTTTCCGGTCGATTTTCAGCTTCTCTCTGGAGATACTCGAGAGCTTCGTGAGTCTGATGACTCGGGGAAACGCCGGGTGCTAACAGGGTTCTTGGAGTACTTGGATTTTCTACCTGGAATTGAAGGGCTTGAGGGAAACGAAGGCGTGCCTATGGATTTGAATGTTGCTTCAACGTCATCCTCGATTTCTTGCTGGGGGCGGCGGCGCTGGTTGAATTTCTCGGCGTTGGCGTTGTTCCACCGCGCGAATCGGACGTCCGTGGGCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.54

Weight (kDa)

4.86

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 305
AccII CGCG 2 cut(s) 291, 293
AciI CCGC 4 cut(s) 247, 250, 289, 312
AcsI RAATTY 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 4 cut(s) 170, 208, 219, 262
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 2 cut(s) 67, 91
AluI AGCT 2 cut(s) 67, 91
Ama87I CYCGRG 2 cut(s) 84, 109
ApoI RAATTY 1 cut(s) 262
ArsI GACNNNNNNTTYG 1 cut(s) 287
AspLEI GCGC 2 cut(s) 255, 293
AsuC2I CCSGG 1 cut(s) 122
AvaI CYCGRG 2 cut(s) 84, 109
BanII GRGCYC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 162
BcnI CCSGG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 256
BisI GCNGC 2 cut(s) 248, 251
BlsI GCNGC 2 cut(s) 249, 252
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 122, 162
BmeT110I CYCGRG 2 cut(s) 84, 109
BmrFI CCNGG 2 cut(s) 122, 162
BpmI CTGGAG 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 240
Bsh1236I CGCG 2 cut(s) 291, 293
Bsh1285I CGRYCG 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 57
BsiHKCI CYCGRG 2 cut(s) 84, 109
BsiSI CCGG 2 cut(s) 53, 121
BslI CCNNNNNNNGG 1 cut(s) 312
BsoBI CYCGRG 2 cut(s) 84, 109
Bsp1286I GDGCHC 1 cut(s) 24
BspACI CCGC 4 cut(s) 247, 250, 289, 312
BspFNI CGCG 2 cut(s) 291, 293
BssECI CCNNGG 1 cut(s) 306
BssNI GRCGYC 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 2 cut(s) 291, 293
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 2 cut(s) 255, 293
BstMCI CGRYCG 1 cut(s) 57
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 120, 160
BstUI CGCG 2 cut(s) 291, 293
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 2 cut(s) 255, 293
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 5 cut(s) 22, 48, 67, 91, 175
CviKI_1 RGCY 5 cut(s) 22, 48, 67, 91, 175
CviQI GTAC 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 84, 109
EcoRII CCWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 24
FaiI YATR 1 cut(s) 200
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 2 cut(s) 248, 251
FokI GGATG 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 248, 251
GlaI GCGC 2 cut(s) 254, 292
GluI GCNGC 2 cut(s) 248, 251
GsaI CCCAGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 256
HapII CCGG 2 cut(s) 53, 121
HhaI GCGC 2 cut(s) 255, 293
Hin1I GRCGYC 1 cut(s) 302
Hin6I GCGC 2 cut(s) 253, 291
HinP1I GCGC 2 cut(s) 253, 291
HinfI GANTC 3 cut(s) 98, 107, 295
HpaII CCGG 2 cut(s) 53, 121
Hpy188I TCNGA 2 cut(s) 103, 300
Hpy188III TCNNGA 3 cut(s) 75, 86, 95
Hpy99I CGWCG 3 cut(s) 29, 32, 38
HpyAV CCTTC 2 cut(s) 164, 182
HpyCH4IV ACGT 2 cut(s) 221, 302
HpySE526I ACGT 2 cut(s) 221, 302
Hsp92I GRCGYC 1 cut(s) 302
HspAI GCGC 2 cut(s) 253, 291
LpnPI CCDG 8 cut(s) 60, 66, 117, 134, 147, 174, 226, 241
MaeII ACGT 2 cut(s) 221, 302
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 165, 262
MlyI GAGTC 2 cut(s) 101, 107
MnlI CCTC 2 cut(s) 172, 238
MspI CCGG 2 cut(s) 53, 121
MspR9I CCNGG 2 cut(s) 122, 162
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 2 cut(s) 291, 293
NciI CCSGG 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 84
PcsI WCGNNNNNNNCGW 3 cut(s) 91, 227, 275
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 249, 252
PleI GAGTC 2 cut(s) 101, 106
PpsI GAGTC 2 cut(s) 101, 106
Psp6I CCWGG 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 1 cut(s) 160
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SatI GCNGC 2 cut(s) 248, 251
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 2 cut(s) 101, 107
ScrFI CCNGG 2 cut(s) 122, 162
SduI GDGCHC 1 cut(s) 24
SetI ASST 5 cut(s) 69, 93, 163, 224, 305
Sfr274I CTCGAG 1 cut(s) 84
SlaI CTCGAG 1 cut(s) 84
SmlI CTYRAG 2 cut(s) 84, 176
SmoI CTYRAG 2 cut(s) 84, 176
Sse9I AATT 2 cut(s) 165, 262
SsiI CCGC 4 cut(s) 247, 250, 289, 312
StyD4I CCNGG 2 cut(s) 120, 160
TaiI ACGT 2 cut(s) 224, 305
TaqI TCGA 3 cut(s) 57, 85, 230
TasI AATT 2 cut(s) 165, 262
TatI WGTACW 1 cut(s) 144
TauI GCSGC 2 cut(s) 250, 253
TfiI GAWTC 1 cut(s) 295
TspGWI ACGGA 2 cut(s) 51, 295
XapI RAATTY 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 84
ZraI GACGTC 1 cut(s) 303
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.