Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Forward (+)

20038059 .. 20041775

Gene Structure 3717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG094600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTCCTGTTCAACTTCATGAGAGGTTTCAAGAGTTTTGATTGGGATTCTGGAAGCACACACGTCTATCATTGTTACGTCAACGTGGATGGGAGTTACAGATTCAAGGGTGTGGCTATCACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGGGGAAGAACATCTGAAATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGATATGGTTGTTCTTCCTTACATGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAACCTATTGGGAAAGAATTTGACCTTGATAGTAATCGGATTTTGAAGAAATTTTATAAGCAGTGTGATCCTGAACTGTACATCCCGCAGCAAAGCGCGGGGAAGTTTTCTAGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

6.08

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AccII	CGCG	1 cut(s)	419
AciI	CCGC	2 cut(s)	407, 419
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	3 cut(s)	130, 338, 371
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	401
AfeI	AGCGCT	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	4 cut(s)	13, 31, 106, 367
AjiI	CACGTC	1 cut(s)	64
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AlwI	GGATC	1 cut(s)	383
Aor51HI	AGCGCT	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	242, 307, 409
ApoI	RAATTY	3 cut(s)	130, 338, 371
AspLEI	GCGC	2 cut(s)	247, 419
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	254, 319, 421
BccI	CCATC	1 cut(s)	83
BfaI	CTAG	3 cut(s)	153, 174, 432
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	248
BisI	GCNGC	3 cut(s)	243, 308, 410
BlsI	GCNGC	3 cut(s)	244, 309, 411
BmgBI	CACGTC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	354
BseGI	GGATG	2 cut(s)	94, 402
BseJI	GATNNNNATC	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	3 cut(s)	254, 319, 421
Bsh1236I	CGCG	1 cut(s)	419
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	2 cut(s)	407, 419
BspFNI	CGCG	1 cut(s)	419
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	383
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	197
BssMI	GATC	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	94, 402
BstFNI	CGCG	1 cut(s)	419
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	2 cut(s)	247, 419
BstKTI	GATC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	222
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	254, 319, 421
BstV2I	GAAGAC	1 cut(s)	224
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	94, 402
BtsI	GCAGTG	2 cut(s)	147, 389
BtsIMutI	CAGTG	2 cut(s)	147, 389
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	2 cut(s)	247, 419
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	3 cut(s)	19, 274, 319
CviJI	RGCY	4 cut(s)	116, 165, 173, 282
CviKI_1	RGCY	4 cut(s)	116, 165, 173, 282
CviQI	GTAC	1 cut(s)	400
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eco47III	AGCGCT	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	233
FaeI	CATG	3 cut(s)	22, 277, 322
FaiI	YATR	5 cut(s)	20, 257, 275, 320, 378
FatI	CATG	3 cut(s)	18, 273, 318
FauI	CCCGC	2 cut(s)	412, 414
Fnu4HI	GCNGC	3 cut(s)	243, 308, 410
FokI	GGATG	2 cut(s)	101, 389
Fsp4HI	GCNGC	3 cut(s)	243, 308, 410
FspBI	CTAG	3 cut(s)	153, 174, 432
GlaI	GCGC	2 cut(s)	246, 418
GluI	GCNGC	3 cut(s)	243, 308, 410
HaeII	RGCGCY	1 cut(s)	248
HhaI	GCGC	2 cut(s)	247, 419
Hin1II	CATG	3 cut(s)	22, 277, 322
Hin6I	GCGC	2 cut(s)	245, 417
HinP1I	GCGC	2 cut(s)	245, 417
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	47, 102, 177
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	214, 360
Hpy188III	TCNNGA	6 cut(s)	19, 31, 51, 125, 251, 392
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	3 cut(s)	63, 78, 84
HpyCH4V	TGCA	2 cut(s)	224, 307
HpySE526I	ACGT	3 cut(s)	63, 78, 84
Hsp92II	CATG	3 cut(s)	22, 277, 322
HspAI	GCGC	2 cut(s)	245, 417
Kzo9I	GATC	1 cut(s)	388
LpnPI	CCDG	7 cut(s)	20, 36, 151, 178, 236, 252, 405
Lsp1109I	GCAGC	3 cut(s)	254, 319, 421
MaeI	CTAG	3 cut(s)	153, 174, 432
MaeII	ACGT	3 cut(s)	63, 78, 84
MaeIII	GTNAC	2 cut(s)	74, 95
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	5 cut(s)	216, 224, 227, 257, 379
MluCI	AATT	4 cut(s)	130, 156, 338, 371
MnlI	CCTC	2 cut(s)	17, 154
MvnI	CGCG	1 cut(s)	419
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	3 cut(s)	22, 277, 322
NlaIV	GGNNCC	1 cut(s)	324
PagI	TCATGA	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	47, 102, 177
PkrI	GCNGC	3 cut(s)	244, 309, 411
PsiI	TTATAA	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SatI	GCNGC	3 cut(s)	243, 308, 410
Sau3AI	GATC	1 cut(s)	388
SetI	ASST	7 cut(s)	28, 66, 81, 87, 175, 328, 348
SfcI	CTRYAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	130, 156, 338, 371
SsiI	CCGC	2 cut(s)	407, 419
SspMI	CTAG	3 cut(s)	153, 174, 432
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	3 cut(s)	66, 81, 87
TasI	AATT	4 cut(s)	130, 156, 338, 371
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	3 cut(s)	47, 102, 177
TscAI	CASTG	2 cut(s)	154, 389
TseI	GCWGC	3 cut(s)	242, 307, 409
TspDTI	ATGAA	2 cut(s)	7, 123
TspRI	CASTG	2 cut(s)	154, 389
XapI	RAATTY	3 cut(s)	130, 338, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	189
XspI	CTAG	3 cut(s)	153, 174, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.