Rh5CG164300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005941
Physical Location & Seq
Forward (+)
15269928 .. 15270371
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG164300.1

Sequence Viewer

Length: 444 bp
ATGTTGGCTTTCCGGTTGATTTCTGGCTTCTCTCTAGAGATACTTGAGAGCTTCGTGGGTCTGATGACTCAGATAAACACTGGGTGCGAGCTTGAGAACTTCTTGGAGTACTTGTATTTTCTGCCTGGAATTGAAGGGCTTGAGGGAGACGAAGGCGTGCCTATGGATTTGAATGTTGCTTCGGCATCGAAGGAGGAGTCGTCCGTAGCGACGGTGGCAATTCTGGTGGAGGAGTCGAAGCGGCGGACGTCATCCTCGATTTCTTGCTGGGTGCGGAAGCTTCTTGGCGTTGGCGTTGTTCCACCACGGGAATCAGACCTCCGTAAGCGGGCTATTCTGGAGCTGGTTGTGGGCCGGGTTTGGGTTCACTGGTGGTGCGAAAATGGGGCAATCGAAGAAGCAGCAATTAAGAGAGATAGAGACAGCGCTTTGTCCTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.32

Weight (kDa)

4.8

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 251
AciI CCGC 4 cut(s) 241, 244, 274, 328
AcyI GRCGYC 1 cut(s) 248
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 1 cut(s) 110
AfeI AGCGCT 1 cut(s) 427
AfiI CCNNNNNNNGG 2 cut(s) 328, 361
AgsI TTSAA 2 cut(s) 134, 172
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 4 cut(s) 51, 91, 280, 343
AluI AGCT 4 cut(s) 51, 91, 280, 343
Alw26I GTCTC 2 cut(s) 141, 414
Aor51HI AGCGCT 1 cut(s) 427
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 401
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 356
BbvI GCAGC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 126
BcnI CCSGG 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 141, 414
BfaI CTAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 429
BisI GCNGC 2 cut(s) 242, 402
BlsI GCNGC 2 cut(s) 243, 403
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 126, 356
BmgT120I GGNCC 1 cut(s) 352
BmrFI CCNGG 2 cut(s) 126, 356
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 359
BpuEI CTTGAG 3 cut(s) 65, 113, 161
BpuMI CCSGG 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 305, 435
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 185, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 361
Bse1I ACTGG 2 cut(s) 85, 374
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 305, 435
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 328, 361
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 85, 374
BseRI GAGGAG 2 cut(s) 209, 245
BseXI GCAGC 1 cut(s) 413
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 1 cut(s) 354
BsiSI CCGG 2 cut(s) 13, 355
BslI CCNNNNNNNGG 2 cut(s) 328, 361
BsmAI GTCTC 2 cut(s) 141, 414
BsmBI CGTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 354
BspACI CCGC 4 cut(s) 241, 244, 274, 328
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 82
BsrI ACTGG 2 cut(s) 85, 374
BssECI CCNNGG 2 cut(s) 305, 435
BssNI GRCGYC 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 89, 158, 330
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 251
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 1 cut(s) 428
BstMAI GTCTC 2 cut(s) 141, 414
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 2 cut(s) 124, 354
BstV1I GCAGC 1 cut(s) 413
BsuRI GGCC 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 78, 367
Cac8I GCNNGC 3 cut(s) 89, 158, 330
CfoI GCGC 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviJI RGCY 9 cut(s) 8, 27, 51, 91, 139, 280, 332, 343, 354
CviKI_1 RGCY 9 cut(s) 8, 27, 51, 91, 139, 280, 332, 343, 354
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 69
DraIII CACNNNGTG 1 cut(s) 84
EciI GGCGGA 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 435
Eco47III AGCGCT 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 141
FaiI YATR 1 cut(s) 164
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 242, 402
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 242, 402
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 427
GluI GCNGC 2 cut(s) 242, 402
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 1 cut(s) 354
HapII CCGG 2 cut(s) 13, 355
HhaI GCGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 248
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 4 cut(s) 67, 197, 233, 311
HpaII CCGG 2 cut(s) 13, 355
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 3 cut(s) 63, 72, 316
Hpy188III TCNNGA 2 cut(s) 35, 338
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 128, 146, 184
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 248
HspAI GCGC 1 cut(s) 426
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 194
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 248
MboII GAAGA 1 cut(s) 407
MluCI AATT 3 cut(s) 129, 219, 405
MlyI GAGTC 3 cut(s) 61, 206, 242
MnlI CCTC 5 cut(s) 136, 187, 223, 265, 329
MseI TTAA 1 cut(s) 408
MspI CCGG 2 cut(s) 13, 355
MspR9I CCNGG 2 cut(s) 126, 356
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 215
NciI CCSGG 1 cut(s) 356
PcsI WCGNNNNNNNCGW 2 cut(s) 206, 254
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 243, 403
PleI GAGTC 3 cut(s) 61, 205, 241
PpsI GAGTC 3 cut(s) 61, 205, 241
Psp6I CCWGG 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 1 cut(s) 352
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 2 cut(s) 242, 402
Sau96I GGNCC 1 cut(s) 352
ScaI AGTACT 1 cut(s) 110
SchI GAGTC 3 cut(s) 61, 206, 242
ScrFI CCNGG 2 cut(s) 126, 356
SetI ASST 6 cut(s) 53, 93, 251, 282, 321, 345
SfaNI GCATC 1 cut(s) 194
SmlI CTYRAG 3 cut(s) 44, 92, 140
SmoI CTYRAG 3 cut(s) 44, 92, 140
Sse9I AATT 3 cut(s) 129, 219, 405
SsiI CCGC 4 cut(s) 241, 244, 274, 328
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 124, 354
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 251
TaqI TCGA 4 cut(s) 188, 236, 257, 393
TasI AATT 3 cut(s) 129, 219, 405
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 2 cut(s) 85, 374
TseI GCWGC 1 cut(s) 401
TspGWI ACGGA 2 cut(s) 193, 311
TspRI CASTG 2 cut(s) 85, 374
XbaI TCTAGA 1 cut(s) 34
XspI CTAG 1 cut(s) 35
ZraI GACGTC 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.