Rh7CG141200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005941
Physical Location & Seq
Forward (+)
11477826 .. 11478637
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG141200.1

Sequence Viewer

Length: 465 bp
ATGTTGGCTTTCCGGTTGATTTCCGGCTTCTCTCTAGAGATACTCGAGAGCTTCGTGGGTTTGATGACTCAGAGAAACACTGGGTGCGAGCTAGGGTTAGGGTTCTTAGAGTACTTGTATTTTCTGCCTGGAATTGAAGGGCTTGAGGGAGACGAAGGCGTGCCTATGGATTTGAATGTTGCTTCGGCGTTGAAGGAGGAGTCGTCCGTAGCGACGGTGGCTATTCTGGTGGTGGAGTCGAAGCGGCGCTCGCGGCGGACGTCATCCTCGATTTCTTGTTGGGCGCAACGGCTTCTCGGCTTTGGCGTTGTTCCATCGCGGGAATCAGACCTCCGTGAGCGGGGTGAGCGGGCTGTTCTGGAGCTGGTTGTGGGCCGGGTTTGGGTTCACCGGTGGTGCCAAAATAGGGAAATCAAAGAAGCAGCAATCGAGAGAGATAGAGACAGTGCTTTATCCTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.2

Weight (kDa)

5.34

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 396
AccBSI CCGCTC 2 cut(s) 340, 349
AccII CGCG 2 cut(s) 253, 319
AciI CCGC 6 cut(s) 244, 253, 256, 319, 340, 349
AcyI GRCGYC 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 3 cut(s) 340, 382, 406
AgeI ACCGGT 1 cut(s) 390
AgsI TTSAA 3 cut(s) 137, 175, 193
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 3 cut(s) 51, 91, 364
AluI AGCT 3 cut(s) 51, 91, 364
Alw26I GTCTC 2 cut(s) 144, 435
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 1 cut(s) 373
ApeKI GCWGC 1 cut(s) 422
AsiGI ACCGGT 1 cut(s) 390
AspLEI GCGC 2 cut(s) 249, 286
AspS9I GGNCC 1 cut(s) 373
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 356, 380
AvaI CYCGRG 1 cut(s) 44
BanI GGYRCC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 434
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 129
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 144, 435
BfaI CTAG 2 cut(s) 35, 92
BfoI RGCGCY 1 cut(s) 250
BisI GCNGC 3 cut(s) 245, 254, 423
BlsI GCNGC 3 cut(s) 246, 255, 424
BmcAI AGTACT 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 129, 377
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 2 cut(s) 129, 377
BmrI ACTGGG 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 456
BsaWI WCCGGW 2 cut(s) 12, 390
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 382, 406
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 1 cut(s) 263
BseLI CCNNNNNNNGG 3 cut(s) 340, 382, 406
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 434
Bsh1236I CGCG 2 cut(s) 253, 319
BshFI GGCC 1 cut(s) 375
BshNI GGYRCC 1 cut(s) 396
BshTI ACCGGT 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 4 cut(s) 13, 24, 376, 391
BslI CCNNNNNNNGG 3 cut(s) 340, 382, 406
BsmAI GTCTC 2 cut(s) 144, 435
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 375
BsoBI CYCGRG 1 cut(s) 44
BspACI CCGC 6 cut(s) 244, 253, 256, 319, 340, 349
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 2 cut(s) 253, 319
BspLI GGNNCC 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 396
BsrBI CCGCTC 2 cut(s) 340, 349
BsrFI RCCGGY 1 cut(s) 390
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 456
BssNI GRCGYC 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 217, 446
BstACI GRCGYC 1 cut(s) 260
BstC8I GCNNGC 4 cut(s) 89, 161, 251, 351
BstDEI CTNAG 2 cut(s) 69, 106
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 2 cut(s) 253, 319
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 2 cut(s) 249, 286
BstMAI GTCTC 2 cut(s) 144, 435
BstMWI GCNNNNNNNGC 4 cut(s) 218, 250, 253, 346
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 127, 375
BstUI CGCG 2 cut(s) 253, 319
BstV1I GCAGC 1 cut(s) 434
BsuRI GGCC 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 78, 451
Cac8I GCNNGC 4 cut(s) 89, 161, 251, 351
CfoI GCGC 2 cut(s) 249, 286
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 373
Csp6I GTAC 1 cut(s) 112
CspAI ACCGGT 1 cut(s) 390
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 69, 106
DraIII CACNNNGTG 1 cut(s) 84
EciI GGCGGA 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
Esp3I CGTCTC 1 cut(s) 144
FaiI YATR 1 cut(s) 167
FauI CCCGC 3 cut(s) 312, 333, 342
Fnu4HI GCNGC 3 cut(s) 245, 254, 423
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 3 cut(s) 245, 254, 423
FspBI CTAG 2 cut(s) 35, 92
GlaI GCGC 2 cut(s) 248, 285
GluI GCNGC 3 cut(s) 245, 254, 423
GsuI CTGGAG 1 cut(s) 380
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 1 cut(s) 375
HapII CCGG 4 cut(s) 13, 24, 376, 391
HhaI GCGC 2 cut(s) 249, 286
Hin1I GRCGYC 1 cut(s) 260
Hin6I GCGC 2 cut(s) 247, 284
HinP1I GCGC 2 cut(s) 247, 284
HinfI GANTC 4 cut(s) 67, 200, 236, 323
HpaII CCGG 4 cut(s) 13, 24, 376, 391
HphI GGTGA 2 cut(s) 356, 380
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 72, 328
Hpy188III TCNNGA 4 cut(s) 35, 46, 359, 430
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 3 cut(s) 131, 149, 187
HpyCH4III ACNGT 2 cut(s) 217, 446
HpyCH4IV ACGT 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 250, 253, 346
HpyF3I CTNAG 2 cut(s) 69, 106
HpySE526I ACGT 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 260
HspAI GCGC 2 cut(s) 247, 284
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 1 cut(s) 434
MaeI CTAG 2 cut(s) 35, 92
MaeII ACGT 1 cut(s) 260
MbiI CCGCTC 2 cut(s) 340, 349
MluCI AATT 1 cut(s) 132
MlyI GAGTC 3 cut(s) 61, 209, 245
MnlI CCTC 4 cut(s) 139, 190, 277, 341
MspI CCGG 4 cut(s) 13, 24, 376, 391
MspR9I CCNGG 2 cut(s) 129, 377
MvaI CCWGG 1 cut(s) 129
MvnI CGCG 2 cut(s) 253, 319
MwoI GCNNNNNNNGC 4 cut(s) 218, 250, 253, 346
NciI CCSGG 1 cut(s) 377
NlaIV GGNNCC 1 cut(s) 398
NmeAIII GCCGAG 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 44
PcsI WCGNNNNNNNCGW 5 cut(s) 51, 209, 257, 266, 303
PfeI GAWTC 1 cut(s) 323
PinAI ACCGGT 1 cut(s) 390
PkrI GCNGC 3 cut(s) 246, 255, 424
PleI GAGTC 3 cut(s) 61, 208, 244
PpsI GAGTC 3 cut(s) 61, 208, 244
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 1 cut(s) 373
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SatI GCNGC 3 cut(s) 245, 254, 423
Sau96I GGNCC 1 cut(s) 373
ScaI AGTACT 1 cut(s) 113
SchI GAGTC 3 cut(s) 61, 209, 245
ScrFI CCNGG 2 cut(s) 129, 377
SetI ASST 5 cut(s) 53, 93, 263, 333, 366
Sfr274I CTCGAG 1 cut(s) 44
SgrAI CRCCGGYG 1 cut(s) 390
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 44, 143
SmoI CTYRAG 2 cut(s) 44, 143
Sse9I AATT 1 cut(s) 132
SsiI CCGC 6 cut(s) 244, 253, 256, 319, 340, 349
SspMI CTAG 2 cut(s) 35, 92
StyD4I CCNGG 2 cut(s) 127, 375
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 217, 446
TaiI ACGT 1 cut(s) 263
TaqI TCGA 4 cut(s) 45, 239, 269, 429
TasI AATT 1 cut(s) 132
TatI WGTACW 1 cut(s) 111
TauI GCSGC 2 cut(s) 247, 256
TfiI GAWTC 1 cut(s) 323
TscAI CASTG 2 cut(s) 85, 451
TseI GCWGC 1 cut(s) 422
TspGWI ACGGA 2 cut(s) 196, 323
TspRI CASTG 2 cut(s) 85, 451
XbaI TCTAGA 1 cut(s) 34
XhoI CTCGAG 1 cut(s) 44
XspI CTAG 2 cut(s) 35, 92
ZraI GACGTC 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.