Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Forward (+)

23103248 .. 23103835

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACTCGGCGAAACACCGGGTGCGAGCTAGGGTCAAGGTTCTTGGAGTACTTGGATTTTCTGCCTGGAATTGAAGGGCTTGAGGGAGACGAAGGCGTGACTATGGATTTGAATGTTGCTTCGACGTCAGAAGAGGAGCCGTCGGTAACGACGGTGGACAATTCAAAGAAGAAGAAGAAGAAGAAAGAAAGAAAGAATCAGTTTTCAATAGATCTGGAGTCTGGTTTGCCTTTGCAACAACAAAGACAATCCCTTTACTTGAATAATTCTTCGTCAAAGAATGACTATGAGAAGAACAAGGAGGAGGCGGAGGAGGAGCTGTCGTGGGCAGTGGCTGCTGGTATTTTCCAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

119

Amino Acids

13.34

Weight (kDa)

4.79

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	128
AciI	CCGC	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	125
AdeI	CACNNNGTG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	50
AgsI	TTSAA	5 cut(s)	74, 112, 165, 207, 262
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	2 cut(s)	28, 319
AluI	AGCT	2 cut(s)	28, 319
Alw26I	GTCTC	1 cut(s)	81
AlwNI	CAGNNNCTG	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	335
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AsuC2I	CCSGG	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	19, 66
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	2 cut(s)	19, 66
BpmI	CTGGAG	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	125
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 308, 335, 338
BseBI	CCWGG	1 cut(s)	66
BseRI	GAGGAG	4 cut(s)	149, 317, 326, 329
BseXI	GCAGC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	138
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	126
BstACI	GRCGYC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	17, 64
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	49
CviJI	RGCY	5 cut(s)	28, 79, 139, 319, 335
CviKI_1	RGCY	5 cut(s)	28, 79, 139, 319, 335
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
DraIII	CACNNNGTG	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	81
FaiI	YATR	2 cut(s)	104, 288
Fnu4HI	GCNGC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	236
HapII	CCGG	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	125
HinfI	GANTC	3 cut(s)	4, 196, 218
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	3 cut(s)	127, 145, 154
HpyAV	CCTTC	2 cut(s)	68, 86
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	136, 316
LpnPI	CCDG	6 cut(s)	31, 51, 78, 200, 207, 324
Lsp1109I	GCAGC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	97, 145
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	8 cut(s)	143, 181, 184, 187, 190, 193, 261, 304
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	4 cut(s)	69, 160, 265, 350
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	6 cut(s)	76, 127, 295, 298, 304, 307
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	19, 66
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	19, 66
SetI	ASST	4 cut(s)	30, 41, 128, 321
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	69, 160, 265, 350
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	17, 64
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	122
TasI	AATT	4 cut(s)	69, 160, 265, 350
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	196
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	97
TspRI	CASTG	1 cut(s)	336
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.