Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Reverse (-)

70049136 .. 70054800

Gene Structure 5665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG504000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTTGGCTTTCCGGCTTATCTTTGGAGATACTCGAGAGCTTCATAGGTCTGATGACTCGGCGAAATTCCGGGTCAGAACAGGGTTCTTGGAGTACTTGGATTTTCTGCCTAGAATTGAAAGGCTTGAGGGAAACGAAGGCGTGCTTATGGCTTTGAATGGTGTGGCTATCACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGGGGAAGAACATCTGAAATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGAGATCCAAGGATATGGTTGTTCTTCCTTACATGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAACCTATTGGGAAAGAATTTGACCTTGATAGTAATCGGTTCTATTACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

164

Amino Acids

18.82

Weight (kDa)

5.04

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	3 cut(s)	65, 181, 458
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	95
AfeI	AGCGCT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	119, 157
AluBI	AGCT	2 cut(s)	40, 224
AluI	AGCT	2 cut(s)	40, 224
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	33
Aor51HI	AGCGCT	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	293, 427
ApoI	RAATTY	3 cut(s)	65, 181, 458
AspLEI	GCGC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	305, 439
BccI	CCATC	1 cut(s)	350
BcnI	CCSGG	1 cut(s)	71
BfaI	CTAG	3 cut(s)	111, 204, 225
BfmI	CTRYAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	3 cut(s)	294, 321, 428
BlsI	GCNGC	3 cut(s)	295, 322, 429
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	71
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	146, 159
BpuMI	CCSGG	1 cut(s)	71
BsaBI	GATNNNNATC	2 cut(s)	364, 474
BsaJI	CCNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	248
Bse8I	GATNNNNATC	2 cut(s)	364, 474
BseDI	CCNNGG	1 cut(s)	369
BseJI	GATNNNNATC	2 cut(s)	364, 474
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	305, 439
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	13, 70
BsoBI	CYCGRG	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	365
BspACI	CCGC	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	143, 330
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	305, 439
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	365
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	143, 330
CfoI	GCGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	394, 439
CviQI	GTAC	1 cut(s)	94
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	369
Eco47III	AGCGCT	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	2 cut(s)	397, 442
FaiI	YATR	6 cut(s)	45, 149, 337, 377, 395, 440
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	2 cut(s)	393, 438
Fnu4HI	GCNGC	3 cut(s)	294, 321, 428
Fsp4HI	GCNGC	3 cut(s)	294, 321, 428
FspBI	CTAG	3 cut(s)	111, 204, 225
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	294, 321, 428
HaeII	RGCGCY	1 cut(s)	299
HapII	CCGG	2 cut(s)	13, 70
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	397, 442
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	2 cut(s)	56, 228
HpaII	CCGG	2 cut(s)	13, 70
Hpy188I	TCNGA	3 cut(s)	52, 77, 265
Hpy188III	TCNNGA	2 cut(s)	35, 176
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	275, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	397, 442
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	365
LpnPI	CCDG	9 cut(s)	26, 66, 83, 202, 229, 287, 303, 325, 330
Lsp1109I	GCAGC	2 cut(s)	305, 439
MaeI	CTAG	3 cut(s)	111, 204, 225
MalI	GATC	1 cut(s)	367
MboI	GATC	1 cut(s)	365
MboII	GAAGA	4 cut(s)	267, 275, 278, 377
MflI	RGATCY	1 cut(s)	365
MluCI	AATT	5 cut(s)	65, 114, 181, 207, 458
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	2 cut(s)	121, 205
MseI	TTAA	1 cut(s)	306
MspI	CCGG	2 cut(s)	13, 70
MspR9I	CCNGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	365
NlaIII	CATG	2 cut(s)	397, 442
NlaIV	GGNNCC	1 cut(s)	444
NmeAIII	GCCGAG	1 cut(s)	38
PaeR7I	CTCGAG	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	295, 322, 429
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	444
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	365
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	294, 321, 428
Sau3AI	GATC	1 cut(s)	365
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	6 cut(s)	42, 50, 226, 306, 448, 468
SfcI	CTRYAG	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	3 cut(s)	33, 125, 174
SmoI	CTYRAG	3 cut(s)	33, 125, 174
Sse9I	AATT	5 cut(s)	65, 114, 181, 207, 458
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	3 cut(s)	111, 204, 225
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	369
TaqI	TCGA	1 cut(s)	34
TasI	AATT	5 cut(s)	65, 114, 181, 207, 458
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	2 cut(s)	293, 427
TspDTI	ATGAA	2 cut(s)	32, 174
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	3 cut(s)	65, 181, 458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	33
XspI	CTAG	3 cut(s)	111, 204, 225
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.