Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Forward (+)

7816769 .. 7825150

Gene Structure 8382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG098300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTTTGACTGGGTTGGGGGAAGAACATCTGAAATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACATGGACAGCCTATTATTATTTAGTCGTTATTTGCAGCAGTTGGTCATGGAACCTATTGGGAAAGAATTTGACCTTGATAGTAATCGGATTTTGAAGAAATTTTATAAGCAGTGTGATCCTGGTTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

96

Amino Acids

10.9

Weight (kDa)

5.16

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	25 - 83	2.2e-07	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	3 cut(s)	126, 139, 269
AcsI	RAATTY	2 cut(s)	224, 257
AcuI	CTGAAG	1 cut(s)	50
AfeI	AGCGCT	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	277
AlwI	GGATC	3 cut(s)	126, 139, 269
Aor51HI	AGCGCT	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	59, 193
ApoI	RAATTY	2 cut(s)	224, 257
AspLEI	GCGC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	71, 205
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	3 cut(s)	60, 87, 194
BlsI	GCNGC	3 cut(s)	61, 88, 195
Bme1390I	CCNGG	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	133, 210
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	41
BsaBI	GATNNNNATC	2 cut(s)	130, 240
BsaJI	CCNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	14
Bse8I	GATNNNNATC	2 cut(s)	130, 240
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	135
BseJI	GATNNNNATC	2 cut(s)	130, 240
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	71, 205
Bsp143I	GATC	2 cut(s)	131, 274
BspACI	CCGC	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	133, 210
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	3 cut(s)	126, 139, 269
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	131, 274
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	134, 277
BstMBI	GATC	2 cut(s)	131, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	71, 205
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	64
CviAII	CATG	2 cut(s)	160, 205
CviJI	RGCY	2 cut(s)	116, 168
CviKI_1	RGCY	2 cut(s)	116, 168
DpnI	GATC	2 cut(s)	133, 276
DpnII	GATC	2 cut(s)	131, 274
Eco130I	CCWWGG	1 cut(s)	135
Eco47III	AGCGCT	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	163, 208
FaiI	YATR	5 cut(s)	103, 143, 161, 206, 264
FatI	CATG	2 cut(s)	159, 204
Fnu4HI	GCNGC	3 cut(s)	60, 87, 194
Fsp4HI	GCNGC	3 cut(s)	60, 87, 194
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	3 cut(s)	60, 87, 194
HaeII	RGCGCY	1 cut(s)	65
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	163, 208
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	31, 246
HpyCH4V	TGCA	2 cut(s)	41, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	163, 208
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	131, 274
LpnPI	CCDG	5 cut(s)	53, 69, 91, 96, 264
Lsp1109I	GCAGC	2 cut(s)	71, 205
MalI	GATC	2 cut(s)	133, 276
MboI	GATC	2 cut(s)	131, 274
MboII	GAAGA	5 cut(s)	33, 41, 44, 143, 265
MflI	RGATCY	1 cut(s)	131
MluCI	AATT	2 cut(s)	224, 257
MseI	TTAA	2 cut(s)	72, 289
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	131, 274
NlaIII	CATG	2 cut(s)	163, 208
NlaIV	GGNNCC	2 cut(s)	133, 210
PkrI	GCNGC	3 cut(s)	61, 88, 195
PsiI	TTATAA	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	133, 210
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	72, 289
SatI	GCNGC	3 cut(s)	60, 87, 194
Sau3AI	GATC	2 cut(s)	131, 274
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	3 cut(s)	72, 214, 234
SfcI	CTRYAG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	224, 257
SsiI	CCGC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	135
TasI	AATT	2 cut(s)	224, 257
TauI	GCSGC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	72, 289
Tru9I	TTAA	2 cut(s)	72, 289
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	2 cut(s)	59, 193
TspRI	CASTG	1 cut(s)	275
XapI	RAATTY	2 cut(s)	224, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.