Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Forward (+)

6857589 .. 6861802

Gene Structure 4214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGAGGTTTCAAGAGTTTTGATTGGGATTCTGGAAGCACACACGTCTATCATTGTTACGTCAACGTGGATGGGAGTTACAGATTCAAGGGTGTGGCTATCACTCAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGCTGGTTAGCTAGATTCCCAATGTTTGACTGGGTTGGGGGAAGAACATCTGAAATGTTTGCAGTTGGTCTTCTTCCAGCAGCCCTTCAGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACATGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAACCTATTGGGAAAGAATTTGACCTTGATAGTAATCGGTTCTATTACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

141

Amino Acids

16.14

Weight (kDa)

5.24

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	81 - 137	1.3e-06	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	2 cut(s)	291, 304
AcsI	RAATTY	2 cut(s)	112, 389
AcuI	CTGAAG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	13, 88
AjiI	CACGTC	1 cut(s)	46
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	2 cut(s)	291, 304
ApeKI	GCWGC	2 cut(s)	224, 358
ApoI	RAATTY	2 cut(s)	112, 389
BamHI	GGATCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	236, 370
BccI	CCATC	2 cut(s)	65, 281
BfaI	CTAG	2 cut(s)	135, 156
BisI	GCNGC	3 cut(s)	225, 252, 359
BlsI	GCNGC	3 cut(s)	226, 253, 360
BmgBI	CACGTC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	298, 375
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	90
BsaBI	GATNNNNATC	2 cut(s)	295, 405
BsaJI	CCNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	179
Bse8I	GATNNNNATC	2 cut(s)	295, 405
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	2 cut(s)	295, 405
BseNI	ACTGG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	236, 370
Bsp143I	GATC	1 cut(s)	296
BspACI	CCGC	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	298, 375
BspPI	GGATC	2 cut(s)	291, 304
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	236, 370
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	261
CviAII	CATG	2 cut(s)	325, 370
CviJI	RGCY	6 cut(s)	98, 147, 155, 227, 281, 333
CviKI_1	RGCY	6 cut(s)	98, 147, 155, 227, 281, 333
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	328, 373
FaiI	YATR	4 cut(s)	268, 308, 326, 371
FatI	CATG	2 cut(s)	324, 369
Fnu4HI	GCNGC	3 cut(s)	225, 252, 359
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	3 cut(s)	225, 252, 359
FspBI	CTAG	2 cut(s)	135, 156
GluI	GCNGC	3 cut(s)	225, 252, 359
Hin1II	CATG	2 cut(s)	328, 373
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	29, 84, 159
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	13, 33, 107
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	239
HpyCH4IV	ACGT	3 cut(s)	45, 60, 66
HpyCH4V	TGCA	2 cut(s)	206, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpySE526I	ACGT	3 cut(s)	45, 60, 66
Hsp92II	CATG	2 cut(s)	328, 373
Kzo9I	GATC	1 cut(s)	296
LpnPI	CCDG	7 cut(s)	18, 133, 160, 218, 234, 256, 261
Lsp1109I	GCAGC	2 cut(s)	236, 370
MaeI	CTAG	2 cut(s)	135, 156
MaeII	ACGT	3 cut(s)	45, 60, 66
MaeIII	GTNAC	2 cut(s)	56, 77
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	4 cut(s)	198, 206, 209, 308
MflI	RGATCY	1 cut(s)	296
MluCI	AATT	3 cut(s)	112, 138, 389
MnlI	CCTC	1 cut(s)	136
MseI	TTAA	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	2 cut(s)	328, 373
NlaIV	GGNNCC	2 cut(s)	298, 375
PfeI	GAWTC	3 cut(s)	29, 84, 159
PkrI	GCNGC	3 cut(s)	226, 253, 360
PspN4I	GGNNCC	2 cut(s)	298, 375
PsuI	RGATCY	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	225, 252, 359
Sau3AI	GATC	1 cut(s)	296
SetI	ASST	8 cut(s)	10, 48, 63, 69, 157, 237, 379, 399
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	112, 138, 389
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	135, 156
StyI	CCWWGG	1 cut(s)	300
TaiI	ACGT	3 cut(s)	48, 63, 69
TasI	AATT	3 cut(s)	112, 138, 389
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	29, 84, 159
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	2 cut(s)	224, 358
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	2 cut(s)	112, 389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XspI	CTAG	2 cut(s)	135, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.