Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Reverse (-)

23627892 .. 23628242

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG142100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGAGATCTGGTAGAGGCGGCACTGATTTCCGAGACTTGCTTCGGAGATCCTCAGGAGGTCCGATTTCATTCTTGAGCTTTTCGATGCCTATGGATTTGAATGTTGTTTCGGCGGCGGAGGAGTCGGCGGCGATTCTGGTAGTGGAGTCGAAGTGGCGCTCGCGGCAAACGTTGTCCTCGATTTTTTGCTGGGCGCGGCGTCGCTGGTTGAATTTCTCGGAGGTTCGACACTTTGACATACTTGTCGCTGCATTTTGCACTGCCATTTGCATAAAAATCTCACGGAGCCTCTCGCCTTTACTTCTGGACTATGCATTATGTATCTTTACGGGCGTACTTCATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.06

Weight (kDa)

9.24

Isoelectric Point (pI)

77.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccII	CGCG	2 cut(s)	166, 199
AciI	CCGC	6 cut(s)	21, 116, 119, 131, 166, 199
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	103, 214
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	162, 199
AspS9I	GGNCC	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	62
AxyI	CCTNAGG	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	163
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	6 cut(s)	22, 117, 132, 167, 200, 252
BlsI	GCNGC	6 cut(s)	23, 118, 133, 168, 201, 253
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	290
BmsI	GCATC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bse21I	CCTNAGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	192
Bsh1236I	CGCG	2 cut(s)	166, 199
BsmAI	GTCTC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	8, 50
BspACI	CCGC	6 cut(s)	21, 116, 119, 131, 166, 199
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	2 cut(s)	166, 199
BspLI	GGNNCC	1 cut(s)	290
BspPI	GGATC	1 cut(s)	45
BssMI	GATC	2 cut(s)	8, 50
BssNI	GRCGYC	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	2 cut(s)	166, 199
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	162, 199
BstKTI	GATC	2 cut(s)	11, 53
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	2 cut(s)	8, 50
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstUI	CGCG	2 cut(s)	166, 199
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	8, 50
BstYI	RGATCY	2 cut(s)	8, 50
Bsu36I	CCTNAGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	24, 261
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	2 cut(s)	162, 199
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	338
CviJI	RGCY	2 cut(s)	81, 291
CviKI_1	RGCY	2 cut(s)	81, 291
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	2 cut(s)	10, 52
DpnII	GATC	2 cut(s)	8, 50
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	319
FaiI	YATR	6 cut(s)	95, 242, 275, 315, 322, 349
Fnu4HI	GCNGC	6 cut(s)	22, 117, 132, 167, 200, 252
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	6 cut(s)	22, 117, 132, 167, 200, 252
GlaI	GCGC	2 cut(s)	161, 198
GluI	GCNGC	6 cut(s)	22, 117, 132, 167, 200, 252
GsaI	CCCAGC	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	163
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	162, 199
Hin1I	GRCGYC	1 cut(s)	202
Hin6I	GCGC	2 cut(s)	160, 197
HinP1I	GCGC	2 cut(s)	160, 197
HinfI	GANTC	3 cut(s)	125, 136, 149
Hpy188I	TCNGA	4 cut(s)	35, 48, 66, 223
Hpy188III	TCNNGA	3 cut(s)	57, 76, 308
Hpy99I	CGWCG	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	254, 261, 273, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	202
HspAI	GCGC	2 cut(s)	160, 197
Kzo9I	GATC	2 cut(s)	8, 50
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	5 cut(s)	42, 125, 178, 193, 293
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	1 cut(s)	173
MalI	GATC	2 cut(s)	10, 52
MboI	GATC	2 cut(s)	8, 50
MflI	RGATCY	2 cut(s)	8, 50
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	2 cut(s)	134, 158
MnlI	CCTC	7 cut(s)	11, 53, 64, 115, 190, 217, 302
Mph1103I	ATGCAT	1 cut(s)	319
MvnI	CGCG	2 cut(s)	166, 199
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	2 cut(s)	8, 50
NlaIV	GGNNCC	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	2 cut(s)	170, 179
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	6 cut(s)	23, 118, 133, 168, 201, 253
PleI	GAGTC	2 cut(s)	133, 157
PpsI	GAGTC	2 cut(s)	133, 157
Psp1406I	AACGTT	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	62
PsuI	RGATCY	2 cut(s)	8, 50
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SatI	GCNGC	6 cut(s)	22, 117, 132, 167, 200, 252
Sau3AI	GATC	2 cut(s)	8, 50
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	2 cut(s)	134, 158
SetI	ASST	4 cut(s)	64, 83, 176, 228
SfaNI	GCATC	1 cut(s)	78
SinI	GGWCC	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	6 cut(s)	21, 116, 119, 131, 166, 199
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	4 cut(s)	86, 152, 182, 229
TasI	AATT	1 cut(s)	214
TauI	GCSGC	5 cut(s)	24, 119, 134, 169, 202
TfiI	GAWTC	1 cut(s)	136
TscAI	CASTG	2 cut(s)	31, 268
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	60, 332
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	2 cut(s)	31, 268
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	214
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.