Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Reverse (-)

6449757 .. 6451981

Gene Structure 2225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG075900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTCTGCAGTTGGTCTTCTTCCAGCAGCGCTTCAGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACATGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAACCTATTGGGAAAGAATTTGACCTTGATAGTAATCGGTCAGTGAATGCTGTTCTGTTGGGTTTGTATTACCTAAACAGTGAAGTGATGCATAATAAAGGATTTGATATCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

96

Amino Acids

10.68

Weight (kDa)

4.75

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	14 - 71	2.5e-07	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	93, 106
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	17
AfeI	AGCGCT	1 cut(s)	30
AlwI	GGATC	2 cut(s)	93, 106
Aor51HI	AGCGCT	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	26, 160
ApoI	RAATTY	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	38, 172
BccI	CCATC	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	3 cut(s)	27, 54, 161
BlsI	GCNGC	3 cut(s)	28, 55, 162
BmiI	GGNNCC	2 cut(s)	100, 177
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	8
BsaBI	GATNNNNATC	2 cut(s)	97, 207
BsaJI	CCNNGG	1 cut(s)	102
Bse8I	GATNNNNATC	2 cut(s)	97, 207
BseDI	CCNNGG	1 cut(s)	102
BseJI	GATNNNNATC	2 cut(s)	97, 207
BseXI	GCAGC	2 cut(s)	38, 172
BsmI	GAATGC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	100, 177
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	2 cut(s)	93, 106
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	38, 172
BstV2I	GAAGAC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	98
BtsIMutI	CAGTG	2 cut(s)	222, 259
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	1 cut(s)	31
CviAII	CATG	2 cut(s)	127, 172
CviJI	RGCY	2 cut(s)	83, 135
CviKI_1	RGCY	2 cut(s)	83, 135
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	17
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	130, 175
FaiI	YATR	5 cut(s)	70, 110, 128, 173, 267
FatI	CATG	2 cut(s)	126, 171
Fnu4HI	GCNGC	3 cut(s)	27, 54, 161
Fsp4HI	GCNGC	3 cut(s)	27, 54, 161
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	3 cut(s)	27, 54, 161
HaeII	RGCGCY	1 cut(s)	32
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	130, 175
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	8, 160, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	130, 175
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	98
LpnPI	CCDG	4 cut(s)	20, 36, 58, 63
Lsp1109I	GCAGC	2 cut(s)	38, 172
LweI	GCATC	1 cut(s)	252
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MboII	GAAGA	3 cut(s)	8, 11, 110
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	1 cut(s)	191
Mph1103I	ATGCAT	1 cut(s)	267
MseI	TTAA	2 cut(s)	39, 289
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	130, 175
NlaIV	GGNNCC	2 cut(s)	100, 177
NsiI	ATGCAT	1 cut(s)	267
PctI	GAATGC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	28, 55, 162
PspN4I	GGNNCC	2 cut(s)	100, 177
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	39, 289
SatI	GCNGC	3 cut(s)	27, 54, 161
Sau3AI	GATC	1 cut(s)	98
SetI	ASST	4 cut(s)	39, 181, 201, 249
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	6
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	254
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	191
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	39, 289
Tru9I	TTAA	2 cut(s)	39, 289
TscAI	CASTG	2 cut(s)	222, 259
TseI	GCWGC	2 cut(s)	26, 160
TspRI	CASTG	2 cut(s)	222, 259
XapI	RAATTY	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.