Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005941

Physical Location & Seq

Genomic Coordinates Forward (+)

17726094 .. 17730692

Gene Structure 4599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG197500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAGGGTTAAGAATAATCCTGCCGCCTTGCTTGCTTTATGCTGGTATTGGGCTACTGATGGATTGGGATCCAAGGATATGGTTGTTCTTCCTTACATGGACAGCCTATTATTATTTAGTCGGTATTTGCAGCAGTTGGTCATGGAACCTATTGGGAAAGAATTTGACCTTGATAGTAATCGGATTTTGAAAAAATTTTATAAGCAGTGTGATCCTGCTAGCGAGCGTGCTTGCGTTGGTGAACAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

83

Amino Acids

9.52

Weight (kDa)

6.15

Isoelectric Point (pI)

57.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	5 - 62	1.9e-07	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0052031 RchiOBHm_Chr6g0245801
rosa_laevigata	RLG00000002206 RLG00000033085
rosa_multiflora	Rmu_sc0017098.1_g000002 Rmu_sc0028447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018130
rosa_samantha	Rh1AG212400 Rh1BG031000 Rh1BG142100 Rh1DG239100 Rh3AG085200 Rh3CG088500 Rh3DG098300 Rh3DG197500 Rh4AG094600 Rh5AG075900 Rh5CG164300 Rh5CG259500 Rh5CG504000 Rh5DG373700 Rh6DG129900 Rh6DG383700 Rh7AG285700 Rh7CG141200 Rh7CG304700 Rh7DG138800
rosa_wichuraiana	Rw4G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	63, 76, 206
AcsI	RAATTY	2 cut(s)	161, 194
AgsI	TTSAA	1 cut(s)	190
AlwI	GGATC	3 cut(s)	63, 76, 206
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	161, 194
AsuHPI	GGTGA	1 cut(s)	251
AsuNHI	GCTAGC	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	24, 131
BlsI	GCNGC	2 cut(s)	25, 132
BmiI	GGNNCC	2 cut(s)	70, 147
BmtI	GCTAGC	1 cut(s)	222
BsaBI	GATNNNNATC	2 cut(s)	67, 177
BsaJI	CCNNGG	1 cut(s)	72
Bse8I	GATNNNNATC	2 cut(s)	67, 177
BseDI	CCNNGG	1 cut(s)	72
BseJI	GATNNNNATC	2 cut(s)	67, 177
BseXI	GCAGC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	68, 211
BspACI	CCGC	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	70, 147
BspOI	GCTAGC	1 cut(s)	222
BspPI	GGATC	3 cut(s)	63, 76, 206
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	68, 211
BssT1I	CCWWGG	1 cut(s)	72
BstC8I	GCNNGC	5 cut(s)	33, 220, 224, 228, 232
BstKTI	GATC	2 cut(s)	71, 214
BstMBI	GATC	2 cut(s)	68, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	212
Cac8I	GCNNGC	5 cut(s)	33, 220, 224, 228, 232
CviAII	CATG	2 cut(s)	97, 142
CviJI	RGCY	2 cut(s)	53, 105
CviKI_1	RGCY	2 cut(s)	53, 105
DpnI	GATC	2 cut(s)	70, 213
DpnII	GATC	2 cut(s)	68, 211
Eco130I	CCWWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	100, 145
FaiI	YATR	5 cut(s)	40, 80, 98, 143, 201
FatI	CATG	2 cut(s)	96, 141
Fnu4HI	GCNGC	2 cut(s)	24, 131
Fsp4HI	GCNGC	2 cut(s)	24, 131
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	2 cut(s)	24, 131
Hin1II	CATG	2 cut(s)	100, 145
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	100, 145
Kzo9I	GATC	2 cut(s)	68, 211
LpnPI	CCDG	3 cut(s)	28, 33, 228
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	219
MalI	GATC	2 cut(s)	70, 213
MboI	GATC	2 cut(s)	68, 211
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	68
MluCI	AATT	2 cut(s)	161, 194
MseI	TTAA	2 cut(s)	9, 250
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	2 cut(s)	68, 211
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	100, 145
NlaIV	GGNNCC	2 cut(s)	70, 147
PkrI	GCNGC	2 cut(s)	25, 132
PsiI	TTATAA	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	70, 147
PsuI	RGATCY	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	9, 250
SatI	GCNGC	2 cut(s)	24, 131
Sau3AI	GATC	2 cut(s)	68, 211
SetI	ASST	2 cut(s)	151, 171
Sse9I	AATT	2 cut(s)	161, 194
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	72
TasI	AATT	2 cut(s)	161, 194
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	9, 250
Tru9I	TTAA	2 cut(s)	9, 250
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	1 cut(s)	130
TspRI	CASTG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	161, 194
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.