RLG00000008987

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005070
Physical Location & Seq
Reverse (-)
44359275 .. 44359938
664 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008987

Sequence Viewer

Length: 615 bp
ATGTGTAATAAAGGAATTGCATGCTTGAGTGAGTCGGATAACCCAATTGATCACCAGCAGCAACAGGCTGTCTACTTGATGGAGAGCCCTTCCACTGCCCCTCACTTTGGCTCTAATTCCACTCATGCTTCCAGCCCTGTTTTGAATGAGGACAATCATCCTCGTGTTAAATTTCTGTGTAGTTTCTCCGGTAGTATATTGCCTCGGCCGCAGGATGGGAGGCTCCGATATGTCGGTGGGGAGACACGGATTGTTAGTGTTCCGCGAGACATTAGTTATGAGGAGTTGATGAGCAAGATGAGGGAGCTTTATGAAGGTGCGGCGGTGCTTAAGTACCAGCAACCGGATGAGGACCTTGACGCCCTTGTCTTGGTTGTGAATGATGATGATGTGACCAACATGATGGAAGAGTATGATAAGTTGGGGTCGGGTGATGGTTTCACCAGGCTCAGGATTTTTTTGTTTCCGTATCCCGACCAAGATGGTGGCTCCTCACACTATGACGGGGATGAAAGGGATCATGAGAGGAGGAAGCAGCATTTAGAGTCCCCTGTTATCACTTCAGTTGATGATCTCCATGGAGTGGAACAGTTCTTTAGTCCAATTGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

205

Amino Acids

23.0

Weight (kDa)

4.65

Isoelectric Point (pI)

58.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 72 - 156 3.8e-19 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 583
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 265
AciI CCGC 4 cut(s) 209, 263, 320, 323
AclWI GGATC 1 cut(s) 525
AcoI YGGCCR 1 cut(s) 206
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 6 cut(s) 107, 215, 343, 370, 450, 583
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 2 cut(s) 236, 261
AlwI GGATC 1 cut(s) 525
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 58, 535
ApoI RAATTY 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 3 cut(s) 44, 433, 443
AvaII GGWCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 89
BauI CACGAG 1 cut(s) 162
BbvI GCAGC 2 cut(s) 70, 547
BccI CCATC 5 cut(s) 73, 209, 397, 428, 476
BciT130I CCWGG 1 cut(s) 445
BciVI GTATCC 1 cut(s) 480
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 236, 261
BfrI CTTAAG 1 cut(s) 329
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 4 cut(s) 59, 209, 321, 536
BlsI GCNGC 4 cut(s) 60, 210, 322, 537
Bme1390I CCNGG 1 cut(s) 445
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 224, 490
BmrFI CCNGG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 203, 577
BsaWI WCCGGW 2 cut(s) 188, 343
Bsc4I CCNNNNNNNGG 6 cut(s) 107, 215, 343, 370, 450, 583
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 203, 577
BseGI GGATG 4 cut(s) 157, 220, 352, 514
BseLI CCNNNNNNNGG 6 cut(s) 107, 215, 343, 370, 450, 583
BseMII CTCAG 1 cut(s) 463
BseRI GAGGAG 3 cut(s) 296, 481, 541
BseX3I CGGCCG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 70, 547
Bsh1236I CGCG 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 189, 344
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 6 cut(s) 107, 215, 343, 370, 450, 583
BsmAI GTCTC 2 cut(s) 236, 261
BsmFI GGGAC 1 cut(s) 532
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 49, 517, 571
Bsp19I CCATGG 1 cut(s) 577
BspACI CCGC 4 cut(s) 209, 263, 320, 323
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 462
BspFNI CGCG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 224, 490
BspPI GGATC 1 cut(s) 525
BspTI CTTAAG 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 203, 577
BssMI GATC 3 cut(s) 49, 517, 571
BssNI GRCGYC 1 cut(s) 360
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 577
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 591
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 360
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 449
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 4 cut(s) 157, 220, 352, 514
BstFNI CGCG 1 cut(s) 265
BstKTI GATC 3 cut(s) 52, 520, 574
BstMAI GTCTC 2 cut(s) 236, 261
BstMBI GATC 3 cut(s) 49, 517, 571
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 443
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 70, 547
BstXI CCANNNNNNTGG 2 cut(s) 403, 485
BstZI CGGCCG 1 cut(s) 206
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 577
BtsCI GGATG 4 cut(s) 157, 220, 352, 514
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 352
CseI GACGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 334
CviAII CATG 5 cut(s) 21, 125, 400, 521, 578
CviJI RGCY 9 cut(s) 68, 87, 111, 135, 208, 223, 307, 448, 489
CviKI_1 RGCY 9 cut(s) 68, 87, 111, 135, 208, 223, 307, 448, 489
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 1 cut(s) 449
DpnI GATC 3 cut(s) 51, 519, 573
DpnII GATC 3 cut(s) 49, 517, 571
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 206
EagI CGGCCG 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EclXI CGGCCG 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 352
Eco52I CGGCCG 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 5 cut(s) 24, 128, 403, 524, 581
FaqI GGGAC 1 cut(s) 532
FatI CATG 5 cut(s) 20, 124, 399, 520, 577
FbaI TGATCA 1 cut(s) 49
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 59, 209, 321, 536
FokI GGATG 4 cut(s) 144, 227, 359, 521
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 4 cut(s) 59, 209, 321, 536
GluI GCNGC 4 cut(s) 59, 209, 321, 536
HaeIII GGCC 1 cut(s) 208
HapII CCGG 2 cut(s) 189, 344
HgaI GACGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 5 cut(s) 24, 128, 403, 524, 581
HinfI GANTC 3 cut(s) 32, 545, 608
HpaII CCGG 2 cut(s) 189, 344
HphI GGTGA 3 cut(s) 44, 433, 443
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 37, 227
Hpy188III TCNNGA 4 cut(s) 451, 473, 521, 612
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 99, 308
HpyCH4III ACNGT 1 cut(s) 591
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 449
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 5 cut(s) 24, 128, 403, 524, 581
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 3 cut(s) 49, 517, 571
LmnI GCTCC 3 cut(s) 228, 304, 494
Lsp1109I GCAGC 2 cut(s) 70, 547
MaeIII GTNAC 1 cut(s) 391
MalI GATC 3 cut(s) 51, 519, 573
MboI GATC 3 cut(s) 49, 517, 571
MboII GAAGA 1 cut(s) 419
MfeI CAATTG 2 cut(s) 45, 603
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 5 cut(s) 15, 45, 115, 170, 603
MlyI GAGTC 2 cut(s) 41, 554
MmeI TCCRAC 1 cut(s) 15
MseI TTAA 2 cut(s) 168, 330
MslI CAYNNNNRTG 1 cut(s) 162
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 2 cut(s) 189, 344
MspR9I CCNGG 1 cut(s) 445
MunI CAATTG 2 cut(s) 45, 603
MvaI CCWGG 1 cut(s) 445
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 208
NcoI CCATGG 1 cut(s) 577
NdeII GATC 3 cut(s) 49, 517, 571
NlaIII CATG 5 cut(s) 24, 128, 403, 524, 581
NlaIV GGNNCC 2 cut(s) 224, 490
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PagI TCATGA 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 583
PkrI GCNGC 4 cut(s) 60, 210, 322, 537
PleI GAGTC 2 cut(s) 40, 553
PpsI GAGTC 2 cut(s) 40, 553
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 224, 490
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 2 cut(s) 168, 330
SatI GCNGC 4 cut(s) 59, 209, 321, 536
Sau3AI GATC 3 cut(s) 49, 517, 571
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 2 cut(s) 41, 554
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 1 cut(s) 89
SetI ASST 3 cut(s) 309, 319, 357
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 25, 329
SmoI CTYRAG 2 cut(s) 25, 329
SphI GCATGC 1 cut(s) 24
Sse9I AATT 5 cut(s) 15, 45, 115, 170, 603
SsiI CCGC 4 cut(s) 209, 263, 320, 323
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 1 cut(s) 591
TasI AATT 5 cut(s) 15, 45, 115, 170, 603
TauI GCSGC 2 cut(s) 211, 323
Tru1I TTAA 2 cut(s) 168, 330
Tru9I TTAA 2 cut(s) 168, 330
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 2 cut(s) 58, 535
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 2 cut(s) 327, 525
TspGWI ACGGA 2 cut(s) 262, 456
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 583
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 24
XmiI GTMKAC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.