RLG00000008990

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005070
Physical Location & Seq
Reverse (-)
44388251 .. 44389296
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008990

Sequence Viewer

Length: 936 bp
ATGTGTAATAAAGGAATTGCATGCTTGAGTGAGTCGGATAACCCAATTGATCAGCAGCAGCAACAGGCTGTCTACTTGATGGAGAGCCCTTCCACTGCCCCTCACTTTGGCTCTAATTCCACTCATGCTTCCAGCCCTGTTTTGAATGAGGACAATCATCCTCGTGTTAAATTTCTGTGTAGTTTCTCTTGTAGTATATTGCCTCGGCCGCAGGATGGGAGGCTCCGATATGTCGGTGGGGAGACACGGATTGTTAGTGTTCCGCGAGACATTAGTTATGAGGAGTTGATGAGCAAGATGAGGGAGCATTATGAAGGTGCGGCGGTGCTTAAGTACCAGCAACCGGATGAGGACCTTGACGCCCTTGTCTCGGTTGTGAATGATGATGATGTTACCAACATGATGGAAGAGTATGATAAGTTGGGGTCGGGTGATGGTTTCACCAGGCTCAGGATTTTTTTGTTTCCGTATCCCGACCAAGATGGTGTCTCCTCACACTATGACGGGGATGAAGGGGATCATGAGAGGAGGTATGTTGATGCTCTCAATAACTTAAATGATGGTTCCGATTTTAGGAAGCAGCATTTAGAGTCCCCTGTTATCACTTCAGTTGATGATCTCCATGGAGTTCAGGGCAACACCATCAGCCCATTAGCCAAAGGTATAACGACATGGAATCTCCATTGGAGTCCTGCATACTATTCTCCTAGGCATCATGGACACCTTGATTCAAGACCAATGGCAGAGTTTCCAACTTCTCCTACCTCTGCACGGTACCGTATGCCGTTTGCAGATTTACTTGATAAATGTTCAGATAGAATGCCTGAAGAATATGCACGGCCGCCATTGAATCATCAGCCTGGATATGAACACCGACCACAGTATTCTGATAATGCTGTATGGCTTCCATCTCACTTTGAGGAGGAATGCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

312

Amino Acids

35.34

Weight (kDa)

4.95

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 72 - 156 9.5e-19 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
Acc65I GGTACC 1 cut(s) 774
AccB1I GGYRCC 1 cut(s) 774
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 265
AciI CCGC 5 cut(s) 209, 263, 320, 323, 842
AclWI GGATC 1 cut(s) 525
AcoI YGGCCR 2 cut(s) 206, 839
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 2 cut(s) 591, 846
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 335, 776
AfiI CCNNNNNNNGG 7 cut(s) 107, 215, 343, 370, 450, 573, 771
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 3 cut(s) 145, 732, 850
AjnI CCWGG 2 cut(s) 443, 859
Alw26I GTCTC 4 cut(s) 236, 261, 373, 493
AlwI GGATC 1 cut(s) 525
AoxI GGCC 2 cut(s) 206, 839
ApeKI GCWGC 3 cut(s) 55, 58, 580
ApoI RAATTY 1 cut(s) 170
Asp718I GGTACC 1 cut(s) 774
AspA2I CCTAGG 1 cut(s) 707
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 433, 443
AvaII GGWCC 1 cut(s) 352
AvrII CCTAGG 1 cut(s) 707
BanI GGYRCC 1 cut(s) 774
BanII GRGCYC 1 cut(s) 89
BauI CACGAG 1 cut(s) 162
BbvI GCAGC 3 cut(s) 67, 70, 592
BccI CCATC 8 cut(s) 73, 209, 397, 428, 476, 554, 650, 916
BceAI ACGGC 2 cut(s) 769, 854
BciT130I CCWGG 2 cut(s) 445, 861
BciVI GTATCC 1 cut(s) 480
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 4 cut(s) 236, 261, 373, 493
BfaI CTAG 1 cut(s) 708
BfrI CTTAAG 1 cut(s) 329
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 6 cut(s) 56, 59, 209, 321, 581, 842
BlnI CCTAGG 1 cut(s) 707
BlsI GCNGC 6 cut(s) 57, 60, 210, 322, 582, 843
Bme1390I CCNGG 2 cut(s) 445, 861
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 3 cut(s) 224, 565, 776
BmrFI CCNGG 2 cut(s) 445, 861
BmsI GCATC 2 cut(s) 529, 721
Bpu10I CCTNAGC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 203, 622, 707
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 7 cut(s) 107, 215, 343, 370, 450, 573, 771
BseBI CCWGG 2 cut(s) 445, 861
BseDI CCNNGG 3 cut(s) 203, 622, 707
BseGI GGATG 4 cut(s) 157, 220, 352, 514
BseLI CCNNNNNNNGG 7 cut(s) 107, 215, 343, 370, 450, 573, 771
BseMII CTCAG 1 cut(s) 463
BseRI GAGGAG 4 cut(s) 296, 481, 541, 935
BseX3I CGGCCG 2 cut(s) 206, 839
BseXI GCAGC 3 cut(s) 67, 70, 592
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 265
Bsh1285I CGRYCG 2 cut(s) 209, 842
BshFI GGCC 2 cut(s) 208, 841
BshNI GGYRCC 1 cut(s) 774
BsiEI CGRYCG 2 cut(s) 209, 842
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 7 cut(s) 107, 215, 343, 370, 450, 573, 771
BsmAI GTCTC 4 cut(s) 236, 261, 373, 493
BsmFI GGGAC 1 cut(s) 577
BsmI GAATGC 2 cut(s) 825, 932
BsnI GGCC 2 cut(s) 208, 841
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 49, 517, 616
Bsp19I CCATGG 1 cut(s) 622
BspACI CCGC 5 cut(s) 209, 263, 320, 323, 842
BspANI GGCC 2 cut(s) 208, 841
BspCNI CTCAG 1 cut(s) 462
BspFNI CGCG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 3 cut(s) 224, 565, 776
BspPI GGATC 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 774
BspTI CTTAAG 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 203, 622, 707
BssMI GATC 3 cut(s) 49, 517, 616
BssNI GRCGYC 1 cut(s) 360
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 622, 707
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 445, 861
Bst4CI ACNGT 3 cut(s) 774, 779, 882
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 360
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 449
BstDSI CCRYGG 1 cut(s) 622
BstF5I GGATG 4 cut(s) 157, 220, 352, 514
BstFNI CGCG 1 cut(s) 265
BstKTI GATC 3 cut(s) 52, 520, 619
BstMAI GTCTC 4 cut(s) 236, 261, 373, 493
BstMBI GATC 3 cut(s) 49, 517, 616
BstMCI CGRYCG 2 cut(s) 209, 842
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 2 cut(s) 445, 861
BstNSI RCATGY 2 cut(s) 24, 934
BstSCI CCNGG 2 cut(s) 443, 859
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 3 cut(s) 67, 70, 592
BstXI CCANNNNNNTGG 1 cut(s) 403
BstZI CGGCCG 2 cut(s) 206, 839
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 2 cut(s) 208, 841
BtgI CCRYGG 1 cut(s) 622
BtsCI GGATG 4 cut(s) 157, 220, 352, 514
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 352
CseI GACGC 1 cut(s) 368
Csp6I GTAC 2 cut(s) 334, 775
CviAII CATG 8 cut(s) 21, 125, 400, 521, 623, 672, 716, 931
CviQI GTAC 2 cut(s) 334, 775
DdeI CTNAG 1 cut(s) 449
DpnI GATC 3 cut(s) 51, 519, 618
DpnII GATC 3 cut(s) 49, 517, 616
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 2 cut(s) 206, 839
EagI CGGCCG 2 cut(s) 206, 839
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EclXI CGGCCG 2 cut(s) 206, 839
Eco130I CCWWGG 2 cut(s) 622, 707
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 352
Eco52I CGGCCG 2 cut(s) 206, 839
Eco57I CTGAAG 2 cut(s) 591, 846
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 443, 859
EcoT14I CCWWGG 2 cut(s) 622, 707
EcoT22I ATGCAT 1 cut(s) 932
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 2 cut(s) 622, 707
FaeI CATG 8 cut(s) 24, 128, 403, 524, 626, 675, 719, 934
FaqI GGGAC 1 cut(s) 577
FatI CATG 8 cut(s) 20, 124, 399, 520, 622, 671, 715, 930
FbaI TGATCA 1 cut(s) 49
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 6 cut(s) 56, 59, 209, 321, 581, 842
FokI GGATG 4 cut(s) 144, 227, 359, 521
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 6 cut(s) 56, 59, 209, 321, 581, 842
FspBI CTAG 1 cut(s) 708
GluI GCNGC 6 cut(s) 56, 59, 209, 321, 581, 842
HaeIII GGCC 2 cut(s) 208, 841
HapII CCGG 1 cut(s) 344
HgaI GACGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 8 cut(s) 24, 128, 403, 524, 626, 675, 719, 934
HinfI GANTC 6 cut(s) 32, 590, 676, 688, 728, 850
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 433, 443
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 5 cut(s) 37, 227, 568, 814, 889
Hpy188III TCNNGA 4 cut(s) 451, 473, 521, 732
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 99, 308, 506
HpyCH4III ACNGT 3 cut(s) 774, 779, 882
HpyCH4V TGCA 6 cut(s) 20, 695, 770, 791, 836, 930
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 449
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 8 cut(s) 24, 128, 403, 524, 626, 675, 719, 934
KpnI GGTACC 1 cut(s) 778
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 3 cut(s) 49, 517, 616
LmnI GCTCC 2 cut(s) 228, 304
Lsp1109I GCAGC 3 cut(s) 67, 70, 592
LweI GCATC 2 cut(s) 529, 721
MaeI CTAG 1 cut(s) 708
MaeIII GTNAC 1 cut(s) 391
MalI GATC 3 cut(s) 51, 519, 618
MboI GATC 3 cut(s) 49, 517, 616
MboII GAAGA 2 cut(s) 419, 839
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 4 cut(s) 15, 45, 115, 170
MlyI GAGTC 3 cut(s) 41, 599, 697
MmeI TCCRAC 2 cut(s) 15, 776
Mph1103I ATGCAT 1 cut(s) 932
MseI TTAA 3 cut(s) 168, 330, 554
MslI CAYNNNNRTG 1 cut(s) 162
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 445, 861
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 2 cut(s) 825, 932
MvaI CCWGG 2 cut(s) 445, 861
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 208
NcoI CCATGG 1 cut(s) 622
NdeII GATC 3 cut(s) 49, 517, 616
NlaIII CATG 8 cut(s) 24, 128, 403, 524, 626, 675, 719, 934
NlaIV GGNNCC 3 cut(s) 224, 565, 776
NmeAIII GCCGAG 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 932
NspI RCATGY 2 cut(s) 24, 934
PaeI GCATGC 1 cut(s) 24
PagI TCATGA 1 cut(s) 520
PctI GAATGC 2 cut(s) 825, 932
PfeI GAWTC 3 cut(s) 676, 728, 850
PkrI GCNGC 6 cut(s) 57, 60, 210, 322, 582, 843
PleI GAGTC 3 cut(s) 40, 598, 696
PpsI GAGTC 3 cut(s) 40, 598, 696
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 443, 859
PspGI CCWGG 2 cut(s) 443, 859
PspN4I GGNNCC 3 cut(s) 224, 565, 776
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
RsaI GTAC 2 cut(s) 335, 776
RsaNI GTAC 2 cut(s) 334, 775
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 3 cut(s) 168, 330, 554
SatI GCNGC 6 cut(s) 56, 59, 209, 321, 581, 842
Sau3AI GATC 3 cut(s) 49, 517, 616
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 3 cut(s) 41, 599, 697
ScrFI CCNGG 2 cut(s) 445, 861
SduI GDGCHC 1 cut(s) 89
SetI ASST 6 cut(s) 319, 357, 533, 664, 726, 767
SfaNI GCATC 2 cut(s) 529, 721
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 25, 329
SmoI CTYRAG 2 cut(s) 25, 329
SphI GCATGC 1 cut(s) 24
Sse9I AATT 4 cut(s) 15, 45, 115, 170
SsiI CCGC 5 cut(s) 209, 263, 320, 323, 842
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 2 cut(s) 443, 859
StyI CCWWGG 2 cut(s) 622, 707
TaaI ACNGT 3 cut(s) 774, 779, 882
TasI AATT 4 cut(s) 15, 45, 115, 170
TauI GCSGC 3 cut(s) 211, 323, 844
TfiI GAWTC 3 cut(s) 676, 728, 850
Tru1I TTAA 3 cut(s) 168, 330, 554
Tru9I TTAA 3 cut(s) 168, 330, 554
TscAI CASTG 1 cut(s) 100
TseI GCWGC 3 cut(s) 55, 58, 580
TspDTI ATGAA 3 cut(s) 327, 525, 882
TspGWI ACGGA 2 cut(s) 262, 456
TspRI CASTG 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 170
XceI RCATGY 2 cut(s) 24, 934
XmaJI CCTAGG 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 708
Zsp2I ATGCAT 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.