Rw0G019080

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00859
OG0005070
Physical Location & Seq
Forward (+)
1927 .. 2973
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019080.1

Sequence Viewer

Length: 1047 bp
TTGATGAGCAAGATGAGGGAGCTTTATGAAGGGGCGGCGGTGCTTAAGTACCAGCAACCGGATGAGGACCTTGACGCCCTTGTCTCGGTTGTGAATGACGATGATGTGACCAACATGATGGAAGAGTATGATAAGTTGGGGTCGGGTGATGGTTTCACCAGGCGCAGGATTTTTTGTTTTTCGTATCCCGACCAAGATGGTGGCTCCTCACACTATGACGGGGATGAAAGGGATCATGAGAGGAGGTATGTTGATGCTCTCAATAACTTAAATGATGGTTCCGAATTTAGGAAGCAGCATTTAGAGTCCCCTGTTATCACTTCAGTTGATGATCTCCGTGGAGTTGAACAGTTCTTTAGTCCAATGAGTCTCGAGGGTGGCCTCCATAGCCAGAGAAACGAGATATCCATGTCTCATTATAACCTGCATCGCCTCAAAATACCTCATATAGGTTCAGGGCAACACCATCAGCCCATTAGCCAAAGGTTTAACAACATGGAAGCACGGTGGAGTCCTGCATACTATTCTCCTAGGCATCACGGGCACCTTGATCCAAGACCAATGGCAGAGTTTCCAACTTCTCCTACCTCTGCACGGTACCGTATGCCATTTGCAGATGTACCTGATAAATGTTCAGATAGAATGCCTGAAGAATATGCACGGCCGCCATTGAATCGTCAGCCTGGATTTCATCAGTATTCTGATAATGCTGTATGGCTTCCATCTCACTTTGAGGAGAGGAATGTATATAATGCTTGTGTTTCTTCTGTTCTGTTTCTCCTCTTTACCTTATCAAACTACCAAAATTGTTATACCAATGACGCATTAGGAATGGAAAGGCCCATGGTTTGCTTCCCATGTGAAATGGGGTTTGAACCCCTTCTCGATACCTACCTTGCTATTTGTGAGAGTTTGCTGTCGCCTAAAGATTGTAGTGTTCGACAGGAGAGGCCCCTATTTGAGGTTGGGTCTGTGAAGCAGGTTTGGGGAATTTCTGGGTATCAAAAAAAACAAAAACACAAAAAAACAAAAACAAAAACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

348

Amino Acids

40.18

Weight (kDa)

5.93

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 1 - 51 4.7e-08 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AasI GACNNNNNNGTC 1 cut(s) 80
Acc36I ACCTGC 2 cut(s) 432, 970
Acc65I GGTACC 1 cut(s) 597
AccB1I GGYRCC 2 cut(s) 543, 597
AciI CCGC 3 cut(s) 35, 38, 665
AclWI GGATC 2 cut(s) 240, 545
AcoI YGGCCR 1 cut(s) 662
AcsI RAATTY 2 cut(s) 284, 990
AcuI CTGAAG 2 cut(s) 306, 669
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 3 cut(s) 50, 599, 621
AfiI CCNNNNNNNGG 7 cut(s) 58, 85, 165, 288, 449, 594, 961
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 3 cut(s) 347, 673, 875
AjnI CCWGG 2 cut(s) 158, 682
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw26I GTCTC 3 cut(s) 88, 374, 417
AlwI GGATC 2 cut(s) 240, 545
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 4 cut(s) 379, 662, 839, 950
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 2 cut(s) 284, 990
Asp700I GAANNNNTTC 1 cut(s) 879
Asp718I GGTACC 1 cut(s) 597
AspA2I CCTAGG 1 cut(s) 530
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 3 cut(s) 67, 840, 951
AsuHPI GGTGA 2 cut(s) 148, 158
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 67
AvrII CCTAGG 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 546
BanI GGYRCC 2 cut(s) 543, 597
BbvI GCAGC 1 cut(s) 307
BccI CCATC 6 cut(s) 112, 143, 191, 269, 474, 730
BceAI ACGGC 1 cut(s) 677
BciT130I CCWGG 2 cut(s) 160, 684
BciVI GTATCC 1 cut(s) 195
BcoDI GTCTC 3 cut(s) 88, 374, 417
BfaI CTAG 1 cut(s) 531
BfrI CTTAAG 1 cut(s) 44
BfuAI ACCTGC 2 cut(s) 432, 970
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 3 cut(s) 36, 296, 665
BlnI CCTAGG 1 cut(s) 530
BlsI GCNGC 3 cut(s) 37, 297, 666
Bme1390I CCNGG 2 cut(s) 160, 684
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 3 cut(s) 67, 840, 951
BmiI GGNNCC 5 cut(s) 205, 280, 545, 599, 953
BmrFI CCNGG 2 cut(s) 160, 684
BmsI GCATC 3 cut(s) 244, 436, 544
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 337, 530, 843
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 7 cut(s) 58, 85, 165, 288, 449, 594, 961
BseBI CCWGG 2 cut(s) 160, 684
BseDI CCNNGG 3 cut(s) 337, 530, 843
BseGI GGATG 2 cut(s) 67, 229
BseLI CCNNNNNNNGG 7 cut(s) 58, 85, 165, 288, 449, 594, 961
BseRI GAGGAG 4 cut(s) 196, 256, 749, 770
BseSI GKGCMC 1 cut(s) 546
BseX3I CGGCCG 1 cut(s) 662
BseXI GCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 576
Bsh1285I CGRYCG 1 cut(s) 665
BshFI GGCC 4 cut(s) 381, 664, 841, 952
BshNI GGYRCC 2 cut(s) 543, 597
BsiEI CGRYCG 1 cut(s) 665
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 7 cut(s) 58, 85, 165, 288, 449, 594, 961
BsmAI GTCTC 3 cut(s) 88, 374, 417
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 648
BsnI GGCC 4 cut(s) 381, 664, 841, 952
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 3 cut(s) 232, 331, 550
Bsp19I CCATGG 1 cut(s) 843
BspACI CCGC 3 cut(s) 35, 38, 665
BspANI GGCC 4 cut(s) 381, 664, 841, 952
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 5 cut(s) 205, 280, 545, 599, 953
BspMI ACCTGC 2 cut(s) 432, 970
BspPI GGATC 2 cut(s) 240, 545
BspT107I GGYRCC 2 cut(s) 543, 597
BspTI CTTAAG 1 cut(s) 44
BssECI CCNNGG 3 cut(s) 337, 530, 843
BssMI GATC 3 cut(s) 232, 331, 550
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 530, 843
Bst2UI CCWGG 2 cut(s) 160, 684
Bst4CI ACNGT 4 cut(s) 351, 507, 597, 602
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 44
BstDSI CCRYGG 2 cut(s) 337, 843
BstENI CCTNNNNNAGG 2 cut(s) 447, 959
BstF5I GGATG 2 cut(s) 67, 229
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 235, 334, 553
BstMAI GTCTC 3 cut(s) 88, 374, 417
BstMBI GATC 3 cut(s) 232, 331, 550
BstMCI CGRYCG 1 cut(s) 665
BstMWI GCNNNNNNNGC 2 cut(s) 387, 541
BstNI CCWGG 2 cut(s) 160, 684
BstSCI CCNGG 2 cut(s) 158, 682
BstSLI GKGCMC 1 cut(s) 546
BstV1I GCAGC 1 cut(s) 307
BstXI CCANNNNNNTGG 2 cut(s) 118, 200
BstZI CGGCCG 1 cut(s) 662
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 4 cut(s) 381, 664, 841, 952
BtgI CCRYGG 2 cut(s) 337, 843
BtgZI GCGATG 1 cut(s) 413
BtsCI GGATG 2 cut(s) 67, 229
BveI ACCTGC 2 cut(s) 432, 970
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 3 cut(s) 67, 840, 951
CseI GACGC 2 cut(s) 83, 830
Csp6I GTAC 3 cut(s) 49, 598, 620
CviAII CATG 6 cut(s) 115, 236, 409, 496, 844, 858
CviQI GTAC 3 cut(s) 49, 598, 620
DpnI GATC 3 cut(s) 234, 333, 552
DpnII GATC 3 cut(s) 232, 331, 550
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 662
EagI CGGCCG 1 cut(s) 662
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 662
Eco130I CCWWGG 2 cut(s) 530, 843
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 67
Eco52I CGGCCG 1 cut(s) 662
Eco57I CTGAAG 2 cut(s) 306, 669
Eco88I CYCGRG 1 cut(s) 371
EcoNI CCTNNNNNAGG 2 cut(s) 447, 959
EcoO109I RGGNCCY 2 cut(s) 67, 951
EcoRII CCWGG 2 cut(s) 158, 682
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 530, 843
ErhI CCWWGG 2 cut(s) 530, 843
FaeI CATG 6 cut(s) 118, 239, 412, 499, 847, 861
FaqI GGGAC 1 cut(s) 292
FatI CATG 6 cut(s) 114, 235, 408, 495, 843, 857
Fnu4HI GCNGC 3 cut(s) 36, 296, 665
FokI GGATG 2 cut(s) 74, 236
Fsp4HI GCNGC 3 cut(s) 36, 296, 665
FspBI CTAG 1 cut(s) 531
GlaI GCGC 1 cut(s) 164
GluI GCNGC 3 cut(s) 36, 296, 665
HaeIII GGCC 4 cut(s) 381, 664, 841, 952
HapII CCGG 1 cut(s) 59
HgaI GACGC 2 cut(s) 83, 830
HhaI GCGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 6 cut(s) 118, 239, 412, 499, 847, 861
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 4 cut(s) 305, 367, 511, 673
HpaII CCGG 1 cut(s) 59
HphI GGTGA 2 cut(s) 148, 158
Hpy188I TCNGA 3 cut(s) 283, 637, 703
Hpy188III TCNNGA 4 cut(s) 188, 236, 371, 884
HpyAV CCTTC 2 cut(s) 23, 890
HpyCH4III ACNGT 4 cut(s) 351, 507, 597, 602
HpyCH4V TGCA 5 cut(s) 427, 518, 593, 614, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 541
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 6 cut(s) 118, 239, 412, 499, 847, 861
HspAI GCGC 1 cut(s) 163
KpnI GGTACC 1 cut(s) 601
Kzo9I GATC 3 cut(s) 232, 331, 550
LmnI GCTCC 2 cut(s) 19, 209
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 3 cut(s) 244, 436, 544
MaeI CTAG 1 cut(s) 531
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 234, 333, 552
MboI GATC 3 cut(s) 232, 331, 550
MboII GAAGA 3 cut(s) 134, 662, 756
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 3 cut(s) 284, 805, 990
MlyI GAGTC 3 cut(s) 314, 376, 520
MmeI TCCRAC 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 879
MseI TTAA 3 cut(s) 45, 269, 489
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 160, 684
Mva1269I GAATGC 1 cut(s) 648
MvaI CCWGG 2 cut(s) 160, 684
MwoI GCNNNNNNNGC 2 cut(s) 387, 541
NcoI CCATGG 1 cut(s) 843
NdeII GATC 3 cut(s) 232, 331, 550
NlaIII CATG 6 cut(s) 118, 239, 412, 499, 847, 861
NlaIV GGNNCC 5 cut(s) 205, 280, 545, 599, 953
NmuCI GTSAC 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 371
PagI TCATGA 1 cut(s) 235
PctI GAATGC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 1 cut(s) 673
PkrI GCNGC 3 cut(s) 37, 297, 666
PleI GAGTC 3 cut(s) 313, 375, 519
PpsI GAGTC 3 cut(s) 313, 375, 519
PpuMI RGGWCCY 1 cut(s) 67
PsiI TTATAA 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 158, 682
PspGI CCWGG 2 cut(s) 158, 682
PspN4I GGNNCC 5 cut(s) 205, 280, 545, 599, 953
PspPI GGNCC 3 cut(s) 67, 840, 951
PspPPI RGGWCCY 1 cut(s) 67
RsaI GTAC 3 cut(s) 50, 599, 621
RsaNI GTAC 3 cut(s) 49, 598, 620
SaqAI TTAA 3 cut(s) 45, 269, 489
SatI GCNGC 3 cut(s) 36, 296, 665
Sau3AI GATC 3 cut(s) 232, 331, 550
Sau96I GGNCC 3 cut(s) 67, 840, 951
SchI GAGTC 3 cut(s) 314, 376, 520
ScrFI CCNGG 2 cut(s) 160, 684
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 3 cut(s) 244, 436, 544
Sfr274I CTCGAG 1 cut(s) 371
SinI GGWCC 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 44, 371
SmoI CTYRAG 2 cut(s) 44, 371
Sse9I AATT 3 cut(s) 284, 805, 990
SsiI CCGC 3 cut(s) 35, 38, 665
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 2 cut(s) 158, 682
StyI CCWWGG 2 cut(s) 530, 843
TaaI ACNGT 4 cut(s) 351, 507, 597, 602
TaqI TCGA 3 cut(s) 372, 885, 940
TasI AATT 3 cut(s) 284, 805, 990
TauI GCSGC 2 cut(s) 38, 667
TfiI GAWTC 1 cut(s) 673
Tru1I TTAA 3 cut(s) 45, 269, 489
Tru9I TTAA 3 cut(s) 45, 269, 489
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 42, 240, 680
TspGWI ACGGA 1 cut(s) 326
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 67
XagI CCTNNNNNAGG 2 cut(s) 447, 959
XapI RAATTY 2 cut(s) 284, 990
XhoI CTCGAG 1 cut(s) 371
XmaJI CCTAGG 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 879
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.