RLG00000016072
NAC Family

proteinaceous RNase P 1, chloroplastic mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002433
Physical Location & Seq
Forward (+)
3684630 .. 3685367
738 bp
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UTR
Exon/CDS
Intron
RLM00000016072

Sequence Viewer

Length: 387 bp
ATGAACCTTGATGAAATATGTTCTCAGGAATCAGAGGAAGGGCACTGGCACATTCCAGTGGTGTCAGAGCATGGTTATGAAGCTGAAAGAATGTGGTTATGCATTATGCGAGCTAAATCACGTGAGGCAAGGAAGGATTCTGCAACCAGACCTGAAGATGCAGAACCTCAAAACAAGGGATTTGCTAGGTCAGCTACCAGAACTGGCATTGAGTCACAACCGTTGAAAATTGCGAACCACAAATATACTAAACACCGACCCCAGGAAATTCTCAAGAATCTCAAAGACATTATATTAGGTTCCACAATCTCGAATCATCGTTCCATAATACCAGAAATTGATACTGCAGAGAAGATTGGTGGATGTACCATTGACTTTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
PPR_long PRORP

Protein Analysis

129

Amino Acids

14.58

Weight (kDa)

6.3

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 174
AcvI CACGTG 1 cut(s) 122
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 226, 380
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 3 cut(s) 83, 113, 194
AluI AGCT 3 cut(s) 83, 113, 194
ApoI RAATTY 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 45
BbrPI CACGTG 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 263
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 3 cut(s) 50, 56, 208
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 3 cut(s) 50, 56, 208
BseSI GKGCMC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 349
BsrI ACTGG 3 cut(s) 50, 56, 208
BssECI CCNNGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 368
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 368
BtsIMutI CAGTG 2 cut(s) 43, 63
Cac8I GCNNGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 366
CviAII CATG 1 cut(s) 71
CviJI RGCY 3 cut(s) 83, 113, 194
CviKI_1 RGCY 3 cut(s) 83, 113, 194
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 174
Eco72I CACGTG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 104
FaeI CATG 1 cut(s) 74
FaiI YATR 9 cut(s) 19, 72, 78, 100, 107, 246, 293, 326, 385
FatI CATG 1 cut(s) 70
FokI GGATG 1 cut(s) 375
FspBI CTAG 1 cut(s) 186
Hin1II CATG 1 cut(s) 74
HinfI GANTC 5 cut(s) 29, 137, 212, 277, 313
Hpy188I TCNGA 2 cut(s) 34, 67
Hpy188III TCNNGA 3 cut(s) 26, 274, 310
HpyAV CCTTC 2 cut(s) 32, 127
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 102, 143, 161, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 1 cut(s) 74
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 213
MboII GAAGA 2 cut(s) 167, 364
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 3 cut(s) 228, 267, 336
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 3 cut(s) 28, 118, 177
Mph1103I ATGCAT 1 cut(s) 104
MslI CAYNNNNRTG 2 cut(s) 56, 75
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 191
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 104
PfeI GAWTC 4 cut(s) 29, 137, 277, 313
PleI GAGTC 1 cut(s) 220
PmaCI CACGTG 1 cut(s) 122
PmlI CACGTG 1 cut(s) 122
PpsI GAGTC 1 cut(s) 220
Ppu21I YACGTR 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 261
PspCI CACGTG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 301
PstI CTGCAG 1 cut(s) 349
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 2 cut(s) 56, 75
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 1 cut(s) 45
SetI ASST 9 cut(s) 9, 85, 115, 124, 154, 169, 191, 196, 301
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 56, 75
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 3 cut(s) 228, 267, 336
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 311
TasI AATT 3 cut(s) 228, 267, 336
TfiI GAWTC 4 cut(s) 29, 137, 277, 313
TscAI CASTG 2 cut(s) 50, 63
TseFI GTSAC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 3 cut(s) 17, 27, 93
TspRI CASTG 2 cut(s) 50, 63
XapI RAATTY 1 cut(s) 267
XspI CTAG 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.