RLG00000016076
NAC Family

proteinaceous RNase P 1, chloroplastic mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002433
Physical Location & Seq
Forward (+)
3716924 .. 3720484
3561 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016076

Sequence Viewer

Length: 858 bp
ATGTGCATGCTTTTGAACAATTCAACGAGGCTGCTGGCTGGCTTCTCAGAAGATAGACCAGGTACTGCTCAGCTGGTTGATAATTGCCGCTGCAAAAAACATATCCGAAGCAATCAAAATCTAAATGTGCCATCAGCAAGTATAGCCCTGCTGGAAATGTCATATACCCTCCTCAGATTTATGCAAGAGCTAAATCTCCAGCTTGTATTGAGGTATAGCCCTGTGTTGGTAGTGAGGAAAGACCGAAATTGTATTATGCAGAAATGGCTCGATTATTATGGACCTTTTGAAGCAGTGGTGGATGGAGCTAATGTCAATGCTGTCGTTAATGGCATACCCCAGAAGCTTCCTTCGAAGAGATGGCCACTCATTGTTCTTCATAACAGGCGTATCACTGGAGGCAGAATGGATGAACGGGTGAATAAGGCGTTGATTGAGAAGTGGCAAAATGCTGATGCTCTCTATGCAACGCCTACTGGGTCAAATGATGATTGGTCAGAATCAGAGGAAGGGCACTGGCACATTCCAGTGGTGTCAGAGCATGGTTATGAAGCTGAAAGAATGTGGTTATGCATTATGCGAGCTAAATCACGTGAAGCAAGGAAGGATTCTGCAACCAGACCTGAAGATGCAGAACCTCAAAACAAGGGATTTGCTAGGTCAGCTACCAGAACTGGCATTGAGTCACAACCGTTGAAAATTGCGAACCACAAATATACTAAACACCGACCCCAGGAAATTCTCAACAATCTCAAAGATATTATATCAGGTTCCACAATCTCGAATCATTGTTCTATAATACCAGAAATTGATACTGCAGAGAAGATTGGTGGTTGTACCATTGGCTTTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
PPR_long PRORP

Protein Analysis

286

Amino Acids

32.3

Weight (kDa)

8.79

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRORP PF16953 86 - 165 2e-15 Protein-only RNase P
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 362
AcsI RAATTY 1 cut(s) 738
AcuI CTGAAG 1 cut(s) 645
AcvI CACGTG 1 cut(s) 593
AfaI GTAC 2 cut(s) 64, 838
AfiI CCNNNNNNNGG 2 cut(s) 226, 733
AgsI TTSAA 5 cut(s) 16, 24, 290, 697, 851
AjnI CCWGG 2 cut(s) 58, 732
AluBI AGCT 8 cut(s) 73, 190, 202, 308, 346, 554, 584, 665
AluI AGCT 8 cut(s) 73, 190, 202, 308, 346, 554, 584, 665
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 31, 90
ApoI RAATTY 1 cut(s) 738
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 430
AsuII TTCGAA 1 cut(s) 353
AvaII GGWCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 516
BaeI ACNNNNGTAYC 2 cut(s) 373, 406
BalI TGGCCA 1 cut(s) 364
BbrPI CACGTG 1 cut(s) 593
BbvI GCAGC 2 cut(s) 18, 77
BccI CCATC 3 cut(s) 139, 296, 354
BciT130I CCWGG 2 cut(s) 60, 734
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 816
BisI GCNGC 3 cut(s) 32, 88, 91
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 3 cut(s) 33, 89, 92
Bme1390I CCNGG 2 cut(s) 60, 734
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 772
BmrFI CCNGG 2 cut(s) 60, 734
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 2 cut(s) 445, 619
BmuI ACTGGG 1 cut(s) 486
BpmI CTGGAG 2 cut(s) 182, 417
Bpu1102I GCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 593
BsaJI CCNNGG 1 cut(s) 732
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 733
Bse1I ACTGG 5 cut(s) 400, 481, 521, 527, 679
BseBI CCWGG 2 cut(s) 60, 734
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 2 cut(s) 307, 415
BseLI CCNNNNNNNGG 2 cut(s) 226, 733
BseMII CTCAG 3 cut(s) 60, 83, 187
BseNI ACTGG 5 cut(s) 400, 481, 521, 527, 679
BseRI GAGGAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 2 cut(s) 18, 77
BshFI GGCC 1 cut(s) 364
BslI CCNNNNNNNGG 2 cut(s) 226, 733
BsnI GGCC 1 cut(s) 364
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 516
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 1 cut(s) 88
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 3 cut(s) 59, 82, 186
BspLI GGNNCC 1 cut(s) 772
BspMAI CTGCAG 1 cut(s) 820
BspT104I TTCGAA 1 cut(s) 353
BsrI ACTGG 5 cut(s) 400, 481, 521, 527, 679
BssECI CCNNGG 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 60, 734
Bst4CI ACNGT 1 cut(s) 693
Bst6I CTCTTC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 593
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 4 cut(s) 8, 36, 40, 582
BstDEI CTNAG 3 cut(s) 46, 69, 173
BstF5I GGATG 2 cut(s) 307, 415
BstMWI GCNNNNNNNGC 4 cut(s) 143, 265, 464, 662
BstNI CCWGG 2 cut(s) 60, 734
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 58, 732
BstSFI CTRYAG 1 cut(s) 816
BstSLI GKGCMC 1 cut(s) 516
BstV1I GCAGC 2 cut(s) 18, 77
BsuRI GGCC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 307, 415
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 4 cut(s) 300, 393, 514, 534
Cac8I GCNNGC 4 cut(s) 8, 36, 40, 582
CaiI CAGNNNCTG 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 281
CsiI ACCWGGT 1 cut(s) 58
Csp6I GTAC 2 cut(s) 63, 837
CviAII CATG 2 cut(s) 7, 542
CviQI GTAC 2 cut(s) 63, 837
DdeI CTNAG 3 cut(s) 46, 69, 173
EaeI YGGCCR 1 cut(s) 362
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 645
Eco72I CACGTG 1 cut(s) 593
EcoRII CCWGG 2 cut(s) 58, 732
EcoT22I ATGCAT 1 cut(s) 575
FaeI CATG 2 cut(s) 10, 545
FatI CATG 2 cut(s) 6, 541
Fnu4HI GCNGC 3 cut(s) 32, 88, 91
FokI GGATG 2 cut(s) 314, 422
Fsp4HI GCNGC 3 cut(s) 32, 88, 91
FspBI CTAG 1 cut(s) 657
GluI GCNGC 3 cut(s) 32, 88, 91
GsuI CTGGAG 2 cut(s) 182, 417
HaeIII GGCC 1 cut(s) 364
Hin1II CATG 2 cut(s) 10, 545
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 4 cut(s) 500, 608, 683, 784
HphI GGTGA 1 cut(s) 430
Hpy188I TCNGA 6 cut(s) 49, 107, 176, 499, 505, 538
Hpy188III TCNNGA 1 cut(s) 781
HpyAV CCTTC 3 cut(s) 360, 503, 598
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 9 cut(s) 6, 93, 184, 259, 467, 573, 614, 632, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 265, 464, 662
HpyF3I CTNAG 3 cut(s) 46, 69, 173
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 2 cut(s) 10, 545
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 2 cut(s) 18, 77
LweI GCATC 2 cut(s) 445, 619
MabI ACCWGGT 1 cut(s) 58
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 1 cut(s) 684
MboII GAAGA 5 cut(s) 62, 367, 368, 638, 835
MhlI GDGCHC 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 364
MluCI AATT 6 cut(s) 19, 82, 247, 699, 738, 807
MluNI TGGCCA 1 cut(s) 364
MlyI GAGTC 1 cut(s) 692
MnlI CCTC 8 cut(s) 21, 179, 182, 204, 228, 392, 499, 648
Mox20I TGGCCA 1 cut(s) 364
Mph1103I ATGCAT 1 cut(s) 575
MscI TGGCCA 1 cut(s) 364
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 2 cut(s) 527, 546
Msp20I TGGCCA 1 cut(s) 364
MspA1I CMGCKG 2 cut(s) 73, 90
MspR9I CCNGG 2 cut(s) 60, 734
MvaI CCWGG 2 cut(s) 60, 734
MwoI GCNNNNNNNGC 4 cut(s) 143, 265, 464, 662
NlaIII CATG 2 cut(s) 10, 545
NlaIV GGNNCC 1 cut(s) 772
NmuCI GTSAC 1 cut(s) 684
NsiI ATGCAT 1 cut(s) 575
NspI RCATGY 1 cut(s) 10
NspV TTCGAA 1 cut(s) 353
PaeI GCATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 500, 608, 784
PkrI GCNGC 3 cut(s) 33, 89, 92
PleI GAGTC 1 cut(s) 691
PmaCI CACGTG 1 cut(s) 593
PmlI CACGTG 1 cut(s) 593
PpsI GAGTC 1 cut(s) 691
Ppu21I YACGTR 1 cut(s) 593
Psp6I CCWGG 2 cut(s) 58, 732
PspCI CACGTG 1 cut(s) 593
PspGI CCWGG 2 cut(s) 58, 732
PspN4I GGNNCC 1 cut(s) 772
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 820
PstNI CAGNNNCTG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 2 cut(s) 64, 838
RsaNI GTAC 2 cut(s) 63, 837
RseI CAYNNNNRTG 2 cut(s) 527, 546
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 3 cut(s) 32, 88, 91
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 2 cut(s) 60, 734
SduI GDGCHC 1 cut(s) 516
SexAI ACCWGGT 1 cut(s) 58
SfaNI GCATC 2 cut(s) 445, 619
SfcI CTRYAG 1 cut(s) 816
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 527, 546
SphI GCATGC 1 cut(s) 10
Sse9I AATT 6 cut(s) 19, 82, 247, 699, 738, 807
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 58, 732
TaaI ACNGT 1 cut(s) 693
TaiI ACGT 1 cut(s) 595
TaqI TCGA 3 cut(s) 270, 353, 782
TaqII GACCGA 1 cut(s) 258
TasI AATT 6 cut(s) 19, 82, 247, 699, 738, 807
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 3 cut(s) 500, 608, 784
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 4 cut(s) 300, 400, 521, 534
TseFI GTSAC 1 cut(s) 684
TseI GCWGC 2 cut(s) 31, 90
Tsp45I GTSAC 1 cut(s) 684
TspDTI ATGAA 3 cut(s) 368, 426, 564
TspRI CASTG 4 cut(s) 300, 400, 521, 534
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 1 cut(s) 738
XceI RCATGY 1 cut(s) 10
XspI CTAG 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.