proteinaceous RNase P 1, chloroplastic mitochondrial-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G29010 |
| fragaria_vesca | FvH4_1g04350 FvH4_1g04370 |
| malus_domestica | MD02G1043200.v1.1 MD02G1043300.v1.1 MD02G1043500.v1.1 MD15G1181900.v1.1 |
| prunus_persica | Prupe.7G233500_v2.0.a1 Prupe.7G233500_v2.0.a1 Prupe.7G233500_v2.0.a1 Prupe.7G233500_v2.0.a1 Prupe.7G233500_v2.0.a1 Prupe.7G233700_v2.0.a1 Prupe.7G233700_v2.0.a1 Prupe.7G233700_v2.0.a1 |
| pyrus_communis | pycom02g03600 pycom02g03620 pycom15g16410 |
| rosa_chinensis | RchiOBHm_Chr2g0090001 RchiOBHm_Chr2g0090021 |
| rosa_laevigata | RLG00000016068 RLG00000016069 RLG00000016072 RLG00000016076 |
| rosa_multiflora | Rmu_sc0000226.1_g000018 Rmu_sc0024500.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00151470 |
| rosa_rugosa | Rorug02G0004600 Rorug02G0004600 Rorug02G0004700 |
| rosa_samantha | Rh2AG049800 Rh2AG049900 Rh2BG048500 Rh2BG048700 Rh2CG050700 Rh2CG050900 Rh2DG050000 Rh2DG050100 Rh5DG028300 |
| rosa_wichuraiana | Rw2G004050 Rw2G004070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 269 |
| AatII | GACGTC | 2 cut(s) | 147, 2222 |
| Acc16I | TGCGCA | 1 cut(s) | 864 |
| AccB1I | GGYRCC | 2 cut(s) | 883, 2263 |
| AccBSI | CCGCTC | 1 cut(s) | 2270 |
| AccI | GTMKAC | 3 cut(s) | 2067, 2958, 4880 |
| AccII | CGCG | 4 cut(s) | 131, 610, 672, 2356 |
| AciI | CCGC | 7 cut(s) | 5, 129, 461, 605, 2139, 2268, 2356 |
| AclI | AACGTT | 1 cut(s) | 2556 |
| AclWI | GGATC | 6 cut(s) | 1323, 1568, 3078, 4056, 4069, 4109 |
| AcoI | YGGCCR | 4 cut(s) | 84, 2450, 4098, 4340 |
| AcsI | RAATTY | 9 cut(s) | 1025, 1646, 1866, 2564, 3457, 4177, 4193, 4274, 4902 |
| AcuI | CTGAAG | 9 cut(s) | 128, 534, 812, 1016, 1586, 2988, 4585, 4632, 4809 |
| AcvI | CACGTG | 1 cut(s) | 4757 |
| AcyI | GRCGYC | 3 cut(s) | 9, 144, 2219 |
| AdeI | CACNNNGTG | 1 cut(s) | 416 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 431, 636, 1420, 1585, 1603, 2391, 2392, 4897 |
| AflII | CTTAAG | 1 cut(s) | 3802 |
| AflIII | ACRYGT | 2 cut(s) | 850, 3753 |
| AjnI | CCWGG | 4 cut(s) | 1831, 2288, 3171, 4896 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3533, 3565, 3740, 3772 |
| Alw21I | GWGCWC | 4 cut(s) | 2137, 3002, 3107, 4599 |
| Alw26I | GTCTC | 4 cut(s) | 3615, 3886, 4527, 4970 |
| Alw44I | GTGCAC | 2 cut(s) | 2133, 4595 |
| AlwI | GGATC | 6 cut(s) | 1323, 1568, 3078, 4056, 4069, 4109 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2747 |
| Ama87I | CYCGRG | 1 cut(s) | 3156 |
| ApaLI | GTGCAC | 2 cut(s) | 2133, 4595 |
| ApoI | RAATTY | 9 cut(s) | 1025, 1646, 1866, 2564, 3457, 4177, 4193, 4274, 4902 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 1686, 1718, 3145, 3177, 3614, 3646, 3719, 3751 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 181, 1029, 4274, 4562 |
| AspLEI | GCGC | 4 cut(s) | 610, 865, 1514, 2356 |
| AspS9I | GGNCC | 8 cut(s) | 627, 1589, 2024, 2430, 3689, 3796, 4220, 4619 |
| AsuC2I | CCSGG | 3 cut(s) | 229, 426, 1991 |
| AsuII | TTCGAA | 1 cut(s) | 4331 |
| AvaI | CYCGRG | 1 cut(s) | 3156 |
| AvaII | GGWCC | 5 cut(s) | 627, 1589, 3689, 4220, 4619 |
| BaeGI | GKGCMC | 5 cut(s) | 888, 1333, 2137, 4599, 4680 |
| BalI | TGGCCA | 3 cut(s) | 86, 4100, 4342 |
| BamHI | GGATCC | 1 cut(s) | 4061 |
| BanI | GGYRCC | 2 cut(s) | 883, 2263 |
| BbrPI | CACGTG | 1 cut(s) | 4757 |
| BbsI | GAAGAC | 2 cut(s) | 440, 1394 |
| Bbv12I | GWGCWC | 4 cut(s) | 2137, 3002, 3107, 4599 |
| BbvCI | CCTCAGC | 1 cut(s) | 726 |
| BceAI | ACGGC | 4 cut(s) | 32, 296, 726, 2465 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2331, 2365 |
| BciT130I | CCWGG | 4 cut(s) | 1833, 2290, 3173, 4898 |
| BciVI | GTATCC | 1 cut(s) | 3160 |
| BclI | TGATCA | 1 cut(s) | 2902 |
| BcnI | CCSGG | 3 cut(s) | 229, 426, 1991 |
| BcoDI | GTCTC | 4 cut(s) | 3615, 3886, 4527, 4970 |
| BfmI | CTRYAG | 5 cut(s) | 972, 2489, 3111, 4155, 4980 |
| BfrI | CTTAAG | 1 cut(s) | 3802 |
| BfuI | GTATCC | 1 cut(s) | 3160 |
| BglII | AGATCT | 1 cut(s) | 1307 |
| BmcAI | AGTACT | 2 cut(s) | 2487, 3035 |
| Bme1390I | CCNGG | 7 cut(s) | 229, 426, 1833, 1991, 2290, 3173, 4898 |
| Bme18I | GGWCC | 5 cut(s) | 627, 1589, 3689, 4220, 4619 |
| BmeT110I | CYCGRG | 1 cut(s) | 3156 |
| BmgT120I | GGNCC | 8 cut(s) | 627, 1589, 2024, 2430, 3689, 3796, 4220, 4619 |
| BmiI | GGNNCC | 7 cut(s) | 629, 714, 885, 1590, 2265, 4063, 4936 |
| BmrFI | CCNGG | 7 cut(s) | 229, 426, 1833, 1991, 2290, 3173, 4898 |
| BmrI | ACTGGG | 3 cut(s) | 3204, 3557, 4464 |
| BmuI | ACTGGG | 3 cut(s) | 3204, 3557, 4464 |
| BpiI | GAAGAC | 2 cut(s) | 440, 1394 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1183, 1215 |
| BpmI | CTGGAG | 4 cut(s) | 207, 1892, 3812, 4395 |
| Bpu10I | CCTNAGC | 3 cut(s) | 726, 801, 2028 |
| Bpu14I | TTCGAA | 1 cut(s) | 4331 |
| BpuEI | CTTGAG | 6 cut(s) | 83, 543, 1247, 2033, 2391, 4892 |
| BpuMI | CCSGG | 3 cut(s) | 229, 426, 1991 |
| Bsa29I | ATCGAT | 2 cut(s) | 540, 3656 |
| BsaAI | YACGTR | 2 cut(s) | 2709, 4757 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2901, 3075, 4113 |
| BsaHI | GRCGYC | 3 cut(s) | 9, 144, 2219 |
| BsaI | GGTCTC | 2 cut(s) | 3886, 4527 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2447, 2477, 2837, 2867, 4236, 4266 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 431, 636, 1420, 1585, 1603, 2391, 2392, 4897 |
| Bse3DI | GCAATG | 8 cut(s) | 369, 597, 997, 1121, 1953, 2330, 3481, 3609 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2901, 3075, 4113 |
| BseBI | CCWGG | 4 cut(s) | 1833, 2290, 3173, 4898 |
| BseCI | ATCGAT | 2 cut(s) | 540, 3656 |
| BseJI | GATNNNNATC | 3 cut(s) | 2901, 3075, 4113 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 431, 636, 1420, 1585, 1603, 2391, 2392, 4897 |
| BseMI | GCAATG | 8 cut(s) | 369, 597, 997, 1121, 1953, 2330, 3481, 3609 |
| BseMII | CTCAG | 8 cut(s) | 654, 740, 977, 1325, 2120, 2297, 2496, 2754 |
| BseRI | GAGGAG | 5 cut(s) | 148, 1817, 2432, 2538, 4629 |
| BseSI | GKGCMC | 5 cut(s) | 888, 1333, 2137, 4599, 4680 |
| BseYI | CCCAGC | 2 cut(s) | 2391, 2432 |
| Bsh1236I | CGCG | 4 cut(s) | 131, 610, 672, 2356 |
| BshNI | GGYRCC | 2 cut(s) | 883, 2263 |
| BshVI | ATCGAT | 2 cut(s) | 540, 3656 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2137, 3002, 3107, 4599 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3156 |
| BsiSI | CCGG | 4 cut(s) | 228, 425, 1990, 2261 |
| BslFI | GGGAC | 6 cut(s) | 613, 2368, 2387, 3166, 3545, 3971 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 431, 636, 1420, 1585, 1603, 2391, 2392, 4897 |
| BsmAI | GTCTC | 4 cut(s) | 3615, 3886, 4527, 4970 |
| BsmFI | GGGAC | 6 cut(s) | 613, 2368, 2387, 3166, 3545, 3971 |
| BsmI | GAATGC | 1 cut(s) | 1490 |
| Bso31I | GGTCTC | 2 cut(s) | 3886, 4527 |
| BsoBI | CYCGRG | 1 cut(s) | 3156 |
| Bsp119I | TTCGAA | 1 cut(s) | 4331 |
| Bsp1286I | GDGCHC | 7 cut(s) | 888, 1333, 2137, 3002, 3107, 4599, 4680 |
| Bsp1407I | TGTACA | 1 cut(s) | 847 |
| Bsp19I | CCATGG | 1 cut(s) | 617 |
| BspACI | CCGC | 7 cut(s) | 5, 129, 461, 605, 2139, 2268, 2356 |
| BspCNI | CTCAG | 8 cut(s) | 655, 739, 978, 1324, 2121, 2298, 2495, 2753 |
| BspDI | ATCGAT | 2 cut(s) | 540, 3656 |
| BspFNI | CGCG | 4 cut(s) | 131, 610, 672, 2356 |
| BspLI | GGNNCC | 7 cut(s) | 629, 714, 885, 1590, 2265, 4063, 4936 |
| BspMAI | CTGCAG | 3 cut(s) | 2493, 3115, 4984 |
| BspPI | GGATC | 6 cut(s) | 1323, 1568, 3078, 4056, 4069, 4109 |
| BspQI | GCTCTTC | 2 cut(s) | 3112, 3774 |
| BspT104I | TTCGAA | 1 cut(s) | 4331 |
| BspT107I | GGYRCC | 2 cut(s) | 883, 2263 |
| BspTI | CTTAAG | 1 cut(s) | 3802 |
| BspTNI | GGTCTC | 2 cut(s) | 3886, 4527 |
| BsrBI | CCGCTC | 1 cut(s) | 2270 |
| BsrDI | GCAATG | 8 cut(s) | 369, 597, 997, 1121, 1953, 2330, 3481, 3609 |
| BsrGI | TGTACA | 1 cut(s) | 847 |
| BssNAI | GTATAC | 2 cut(s) | 2068, 4881 |
| BssNI | GRCGYC | 3 cut(s) | 9, 144, 2219 |
| BssT1I | CCWWGG | 8 cut(s) | 21, 81, 452, 617, 888, 914, 1507, 4287 |
| Bst1107I | GTATAC | 2 cut(s) | 2068, 4881 |
| Bst2UI | CCWGG | 4 cut(s) | 1833, 2290, 3173, 4898 |
| Bst6I | CTCTTC | 8 cut(s) | 750, 1368, 2239, 2879, 2910, 3112, 3774, 4328 |
| BstACI | GRCGYC | 3 cut(s) | 9, 144, 2219 |
| BstAFI | CTTAAG | 1 cut(s) | 3802 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4594 |
| BstAUI | TGTACA | 1 cut(s) | 847 |
| BstBAI | YACGTR | 2 cut(s) | 2709, 4757 |
| BstBI | TTCGAA | 1 cut(s) | 4331 |
| BstDSI | CCRYGG | 2 cut(s) | 312, 617 |
| BstEII | GGTNACC | 2 cut(s) | 16, 2292 |
| BstFNI | CGCG | 4 cut(s) | 131, 610, 672, 2356 |
| BstHHI | GCGC | 4 cut(s) | 610, 865, 1514, 2356 |
| BstMAI | GTCTC | 4 cut(s) | 3615, 3886, 4527, 4970 |
| BstNI | CCWGG | 4 cut(s) | 1833, 2290, 3173, 4898 |
| BstNSI | RCATGY | 4 cut(s) | 854, 1908, 2170, 3757 |
| BstPI | GGTNACC | 2 cut(s) | 16, 2292 |
| BstSCI | CCNGG | 7 cut(s) | 227, 424, 1831, 1989, 2288, 3171, 4896 |
| BstSFI | CTRYAG | 5 cut(s) | 972, 2489, 3111, 4155, 4980 |
| BstSLI | GKGCMC | 5 cut(s) | 888, 1333, 2137, 4599, 4680 |
| BstUI | CGCG | 4 cut(s) | 131, 610, 672, 2356 |
| BstV2I | GAAGAC | 2 cut(s) | 440, 1394 |
| BstX2I | RGATCY | 2 cut(s) | 1307, 4061 |
| BstYI | RGATCY | 2 cut(s) | 1307, 4061 |
| BstZ17I | GTATAC | 2 cut(s) | 2068, 4881 |
| Bsu15I | ATCGAT | 2 cut(s) | 540, 3656 |
| BsuI | GTATCC | 1 cut(s) | 3160 |
| BsuTUI | ATCGAT | 2 cut(s) | 540, 3656 |
| BtgI | CCRYGG | 2 cut(s) | 312, 617 |
| BtsI | GCAGTG | 2 cut(s) | 2569, 4239 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2747 |
| CfoI | GCGC | 4 cut(s) | 610, 865, 1514, 2356 |
| Cfr13I | GGNCC | 8 cut(s) | 627, 1589, 2024, 2430, 3689, 3796, 4220, 4619 |
| ClaI | ATCGAT | 2 cut(s) | 540, 3656 |
| CseI | GACGC | 3 cut(s) | 434, 2289, 3921 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4066, 4101 |
| DraI | TTTAAA | 1 cut(s) | 2860 |
| DraIII | CACNNNGTG | 1 cut(s) | 416 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 269 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 269 |
| EaeI | YGGCCR | 4 cut(s) | 84, 2450, 4098, 4340 |
| Eam1104I | CTCTTC | 8 cut(s) | 750, 1368, 2239, 2879, 2910, 3112, 3774, 4328 |
| EarI | CTCTTC | 8 cut(s) | 750, 1368, 2239, 2879, 2910, 3112, 3774, 4328 |
| Eco130I | CCWWGG | 8 cut(s) | 21, 81, 452, 617, 888, 914, 1507, 4287 |
| Eco147I | AGGCCT | 1 cut(s) | 396 |
| Eco31I | GGTCTC | 2 cut(s) | 3886, 4527 |
| Eco32I | GATATC | 1 cut(s) | 199 |
| Eco47I | GGWCC | 5 cut(s) | 627, 1589, 3689, 4220, 4619 |
| Eco57I | CTGAAG | 9 cut(s) | 128, 534, 812, 1016, 1586, 2988, 4585, 4632, 4809 |
| Eco72I | CACGTG | 1 cut(s) | 4757 |
| Eco88I | CYCGRG | 1 cut(s) | 3156 |
| Eco91I | GGTNACC | 2 cut(s) | 16, 2292 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3796 |
| EcoO65I | GGTNACC | 2 cut(s) | 16, 2292 |
| EcoRI | GAATTC | 1 cut(s) | 2564 |
| EcoRII | CCWGG | 4 cut(s) | 1831, 2288, 3171, 4896 |
| EcoRV | GATATC | 1 cut(s) | 199 |
| EcoT14I | CCWWGG | 8 cut(s) | 21, 81, 452, 617, 888, 914, 1507, 4287 |
| EcoT22I | ATGCAT | 1 cut(s) | 4739 |
| ErhI | CCWWGG | 8 cut(s) | 21, 81, 452, 617, 888, 914, 1507, 4287 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 37, 1392, 1424, 3335, 3367 |
| FaqI | GGGAC | 6 cut(s) | 613, 2368, 2387, 3166, 3545, 3971 |
| FauI | CCCGC | 3 cut(s) | 454, 2146, 2275 |
| FauNDI | CATATG | 1 cut(s) | 4632 |
| FbaI | TGATCA | 1 cut(s) | 2902 |
| FblI | GTMKAC | 3 cut(s) | 2067, 2958, 4880 |
| FspI | TGCGCA | 1 cut(s) | 864 |
| GlaI | GCGC | 4 cut(s) | 609, 864, 1513, 2355 |
| GsaI | CCCAGC | 2 cut(s) | 2395, 2436 |
| GsuI | CTGGAG | 4 cut(s) | 207, 1892, 3812, 4395 |
| HapII | CCGG | 4 cut(s) | 228, 425, 1990, 2261 |
| HgaI | GACGC | 3 cut(s) | 434, 2289, 3921 |
| HhaI | GCGC | 4 cut(s) | 610, 865, 1514, 2356 |
| Hin1I | GRCGYC | 3 cut(s) | 9, 144, 2219 |
| Hin6I | GCGC | 4 cut(s) | 608, 863, 1512, 2354 |
| HinP1I | GCGC | 4 cut(s) | 608, 863, 1512, 2354 |
| HincII | GTYRAC | 6 cut(s) | 76, 262, 274, 408, 2361, 3216 |
| HindII | GTYRAC | 6 cut(s) | 76, 262, 274, 408, 2361, 3216 |
| HindIII | AAGCTT | 4 cut(s) | 527, 647, 4183, 4322 |
| HpaI | GTTAAC | 2 cut(s) | 76, 2361 |
| HpaII | CCGG | 4 cut(s) | 228, 425, 1990, 2261 |
| Hpy99I | CGWCG | 6 cut(s) | 41, 146, 2221, 2224, 2283, 3937 |
| HpyCH4IV | ACGT | 5 cut(s) | 144, 2219, 2556, 2708, 4756 |
| HpySE526I | ACGT | 5 cut(s) | 144, 2219, 2556, 2708, 4756 |
| Hsp92I | GRCGYC | 3 cut(s) | 9, 144, 2219 |
| HspAI | GCGC | 4 cut(s) | 608, 863, 1512, 2354 |
| Ksp22I | TGATCA | 1 cut(s) | 2902 |
| KspAI | GTTAAC | 2 cut(s) | 76, 2361 |
| LguI | GCTCTTC | 2 cut(s) | 3112, 3774 |
| LmnI | GCTCC | 7 cut(s) | 382, 659, 718, 2275, 3760, 3818, 4244 |
| MaeII | ACGT | 5 cut(s) | 144, 2219, 2556, 2708, 4756 |
| MbiI | CCGCTC | 1 cut(s) | 2270 |
| MfeI | CAATTG | 4 cut(s) | 750, 2343, 2376, 4104 |
| MflI | RGATCY | 2 cut(s) | 1307, 4061 |
| MhlI | GDGCHC | 7 cut(s) | 888, 1333, 2137, 3002, 3107, 4599, 4680 |
| MlsI | TGGCCA | 3 cut(s) | 86, 4100, 4342 |
| MluNI | TGGCCA | 3 cut(s) | 86, 4100, 4342 |
| MlyI | GAGTC | 5 cut(s) | 1814, 2327, 2390, 3148, 4856 |
| Mox20I | TGGCCA | 3 cut(s) | 86, 4100, 4342 |
| Mph1103I | ATGCAT | 1 cut(s) | 4739 |
| MroXI | GAANNNNTTC | 4 cut(s) | 181, 1029, 4274, 4562 |
| MscI | TGGCCA | 3 cut(s) | 86, 4100, 4342 |
| MslI | CAYNNNNRTG | 4 cut(s) | 56, 355, 4691, 4710 |
| Msp20I | TGGCCA | 3 cut(s) | 86, 4100, 4342 |
| MspA1I | CMGCKG | 2 cut(s) | 605, 3116 |
| MspCI | CTTAAG | 1 cut(s) | 3802 |
| MspI | CCGG | 4 cut(s) | 228, 425, 1990, 2261 |
| MspR9I | CCNGG | 7 cut(s) | 229, 426, 1833, 1991, 2290, 3173, 4898 |
| MunI | CAATTG | 4 cut(s) | 750, 2343, 2376, 4104 |
| Mva1269I | GAATGC | 1 cut(s) | 1490 |
| MvaI | CCWGG | 4 cut(s) | 1833, 2290, 3173, 4898 |
| MvnI | CGCG | 4 cut(s) | 131, 610, 672, 2356 |
| NciI | CCSGG | 3 cut(s) | 229, 426, 1991 |
| NcoI | CCATGG | 1 cut(s) | 617 |
| NdeI | CATATG | 1 cut(s) | 4632 |
| NlaIV | GGNNCC | 7 cut(s) | 629, 714, 885, 1590, 2265, 4063, 4936 |
| NmuCI | GTSAC | 5 cut(s) | 16, 2160, 3830, 4513, 4848 |
| NsbI | TGCGCA | 1 cut(s) | 864 |
| NsiI | ATGCAT | 1 cut(s) | 4739 |
| NspI | RCATGY | 4 cut(s) | 854, 1908, 2170, 3757 |
| NspV | TTCGAA | 1 cut(s) | 4331 |
| PaeR7I | CTCGAG | 1 cut(s) | 3156 |
| PceI | AGGCCT | 1 cut(s) | 396 |
| PciI | ACATGT | 2 cut(s) | 850, 3753 |
| PciSI | GCTCTTC | 2 cut(s) | 3112, 3774 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PctI | GAATGC | 1 cut(s) | 1490 |
| PdmI | GAANNNNTTC | 4 cut(s) | 181, 1029, 4274, 4562 |
| PfeI | GAWTC | 9 cut(s) | 287, 3176, 3230, 3481, 4142, 4664, 4772, 4912, 4948 |
| PflFI | GACNNNGTC | 2 cut(s) | 41, 2221 |
| PfoI | TCCNGGA | 1 cut(s) | 424 |
| PleI | GAGTC | 5 cut(s) | 1813, 2326, 2389, 3148, 4855 |
| PmaCI | CACGTG | 1 cut(s) | 4757 |
| PmlI | CACGTG | 1 cut(s) | 4757 |
| PpsI | GAGTC | 5 cut(s) | 1813, 2326, 2389, 3148, 4855 |
| Ppu21I | YACGTR | 2 cut(s) | 2709, 4757 |
| PscI | ACATGT | 2 cut(s) | 850, 3753 |
| Psp1406I | AACGTT | 1 cut(s) | 2556 |
| Psp6I | CCWGG | 4 cut(s) | 1831, 2288, 3171, 4896 |
| PspCI | CACGTG | 1 cut(s) | 4757 |
| PspEI | GGTNACC | 2 cut(s) | 16, 2292 |
| PspFI | CCCAGC | 2 cut(s) | 2391, 2432 |
| PspGI | CCWGG | 4 cut(s) | 1831, 2288, 3171, 4896 |
| PspN4I | GGNNCC | 7 cut(s) | 629, 714, 885, 1590, 2265, 4063, 4936 |
| PspPI | GGNCC | 8 cut(s) | 627, 1589, 2024, 2430, 3689, 3796, 4220, 4619 |
| PspXI | VCTCGAGB | 1 cut(s) | 3156 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 987, 1019 |
| PstI | CTGCAG | 3 cut(s) | 2493, 3115, 4984 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2747 |
| PsuI | RGATCY | 2 cut(s) | 1307, 4061 |
| PsyI | GACNNNGTC | 2 cut(s) | 41, 2221 |
| PvuII | CAGCTG | 1 cut(s) | 3116 |
| RseI | CAYNNNNRTG | 4 cut(s) | 56, 355, 4691, 4710 |
| SapI | GCTCTTC | 2 cut(s) | 3112, 3774 |
| Sau96I | GGNCC | 8 cut(s) | 627, 1589, 2024, 2430, 3689, 3796, 4220, 4619 |
| ScaI | AGTACT | 2 cut(s) | 2487, 3035 |
| SchI | GAGTC | 5 cut(s) | 1814, 2327, 2390, 3148, 4856 |
| ScrFI | CCNGG | 7 cut(s) | 229, 426, 1833, 1991, 2290, 3173, 4898 |
| SduI | GDGCHC | 7 cut(s) | 888, 1333, 2137, 3002, 3107, 4599, 4680 |
| SfcI | CTRYAG | 5 cut(s) | 972, 2489, 3111, 4155, 4980 |
| Sfr274I | CTCGAG | 1 cut(s) | 3156 |
| SfuI | TTCGAA | 1 cut(s) | 4331 |
| SinI | GGWCC | 5 cut(s) | 627, 1589, 3689, 4220, 4619 |
| SlaI | CTCGAG | 1 cut(s) | 3156 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 56, 355, 4691, 4710 |
| SmlI | CTYRAG | 8 cut(s) | 98, 558, 1226, 2048, 2406, 3156, 3802, 4907 |
| SmoI | CTYRAG | 8 cut(s) | 98, 558, 1226, 2048, 2406, 3156, 3802, 4907 |
| SseBI | AGGCCT | 1 cut(s) | 396 |
| SsiI | CCGC | 7 cut(s) | 5, 129, 461, 605, 2139, 2268, 2356 |
| SspI | AATATT | 1 cut(s) | 3724 |
| StuI | AGGCCT | 1 cut(s) | 396 |
| StyD4I | CCNGG | 7 cut(s) | 227, 424, 1831, 1989, 2288, 3171, 4896 |
| StyI | CCWWGG | 8 cut(s) | 21, 81, 452, 617, 888, 914, 1507, 4287 |
| TaiI | ACGT | 5 cut(s) | 147, 2222, 2559, 2711, 4759 |
| TatI | WGTACW | 4 cut(s) | 847, 2485, 2822, 3033 |
| TauI | GCSGC | 2 cut(s) | 131, 608 |
| TfiI | GAWTC | 9 cut(s) | 287, 3176, 3230, 3481, 4142, 4664, 4772, 4912, 4948 |
| TseFI | GTSAC | 5 cut(s) | 16, 2160, 3830, 4513, 4848 |
| Tsp45I | GTSAC | 5 cut(s) | 16, 2160, 3830, 4513, 4848 |
| TspGWI | ACGGA | 1 cut(s) | 1393 |
| Tth111I | GACNNNGTC | 2 cut(s) | 41, 2221 |
| Vha464I | CTTAAG | 1 cut(s) | 3802 |
| VneI | GTGCAC | 2 cut(s) | 2133, 4595 |
| VpaK11BI | GGWCC | 5 cut(s) | 627, 1589, 3689, 4220, 4619 |
| XapI | RAATTY | 9 cut(s) | 1025, 1646, 1866, 2564, 3457, 4177, 4193, 4274, 4902 |
| XbaI | TCTAGA | 1 cut(s) | 1808 |
| XceI | RCATGY | 4 cut(s) | 854, 1908, 2170, 3757 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2296 |
| XhoI | CTCGAG | 1 cut(s) | 3156 |
| XmiI | GTMKAC | 3 cut(s) | 2067, 2958, 4880 |
| XmnI | GAANNNNTTC | 4 cut(s) | 181, 1029, 4274, 4562 |
| ZraI | GACGTC | 2 cut(s) | 145, 2220 |
| ZrmI | AGTACT | 2 cut(s) | 2487, 3035 |
| Zsp2I | ATGCAT | 1 cut(s) | 4739 |