Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024500.1

Orthogroup ID

OG0002433

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1470

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024500.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggcgggcgtcaaggtcaccttggaggtcggaagcgacggtgtcgccgtcatcaccatgttcaatcctcccgtcaacgccttggccatatccattctcaatgggctgaaggagaagttcgatgaggccgcgaggagaaacgacgtcaaggctattgtcgttactggaaatggaggaaggttttctggaggttttgatatcaatgttttcgagaaggttcacgctaccggggatatttcgctcatgcctgatgtatctgttgacttgatggtcaacactgttgaagattcaaagaagcctgttgttgctgccgtggaaggacttgctctcggaggtggcttggagttggcattgggatgccatgctcgcattgctgctccaagaactcaactaggcctgccagagttgacacttggtgttattccgggatttggaggcacacagcgtcttccaaggcttgcggggcttccgaaggcagttgagatgatgctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003857 GO:0004165 GO:0004300 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008692 GO:0009056 GO:0009058 GO:0009062 GO:0009506 GO:0009507 GO:0009536 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010817 GO:0015631 GO:0016042 GO:0016053 GO:0016054 GO:0016491 GO:0016614 GO:0016616 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0016856 GO:0016860 GO:0016863 GO:0018812 GO:0019395 GO:0019752 GO:0022414 GO:0030054 GO:0030258 GO:0030312 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0055044 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072329 GO:0072330 GO:0090567 GO:0097159 GO:1901363 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01100 ko01110 ko01212 map00071 map00592 map01100 map01110 map01212

Pfam Domains

Protein Families

3HCDH 3HCDH_N ECH_1

Protein Analysis

164

Amino Acids

16.97

Weight (kDa)

5.67

Isoelectric Point (pI)

25.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29010
fragaria_vesca	FvH4_1g04350 FvH4_1g04370
malus_domestica	MD02G1043200.v1.1 MD02G1043300.v1.1 MD02G1043500.v1.1 MD15G1181900.v1.1
prunus_persica	Prupe.7G233500_v2.0.a1 Prupe.7G233500_v2.0.a1 Prupe.7G233500_v2.0.a1 Prupe.7G233500_v2.0.a1 Prupe.7G233500_v2.0.a1 Prupe.7G233700_v2.0.a1 Prupe.7G233700_v2.0.a1 Prupe.7G233700_v2.0.a1
pyrus_communis	pycom02g03600 pycom02g03620 pycom15g16410
rosa_chinensis	RchiOBHm_Chr2g0090001 RchiOBHm_Chr2g0090021
rosa_laevigata	RLG00000016068 RLG00000016069 RLG00000016072 RLG00000016076
rosa_multiflora	Rmu_sc0000226.1_g000018 Rmu_sc0024500.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151470
rosa_rugosa	Rorug02G0004600 Rorug02G0004600 Rorug02G0004700
rosa_samantha	Rh2AG049800 Rh2AG049900 Rh2BG048500 Rh2BG048700 Rh2CG050700 Rh2CG050900 Rh2DG050000 Rh2DG050100 Rh5DG028300
rosa_wichuraiana	Rw2G004050 Rw2G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AatII	GACGTC	1 cut(s)	147
AccII	CGCG	1 cut(s)	131
AciI	CCGC	3 cut(s)	5, 129, 461
AcoI	YGGCCR	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	2 cut(s)	9, 144
AdeI	CACNNNGTG	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	64, 284, 291
AoxI	GGCC	3 cut(s)	84, 126, 394
ApeKI	GCWGC	2 cut(s)	308, 374
Asp700I	GAANNNNTTC	1 cut(s)	181
AsuC2I	CCSGG	2 cut(s)	229, 426
AsuHPI	GGTGA	2 cut(s)	10, 46
BalI	TGGCCA	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	295, 361
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	2 cut(s)	32, 296
BcnI	CCSGG	2 cut(s)	229, 426
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	3 cut(s)	129, 309, 375
BlsI	GCNGC	3 cut(s)	130, 310, 376
Bme1390I	CCNGG	2 cut(s)	229, 426
BmrFI	CCNGG	2 cut(s)	229, 426
BmsI	GCATC	2 cut(s)	347, 477
BpiI	GAAGAC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	207
BpuMI	CCSGG	2 cut(s)	229, 426
BsaHI	GRCGYC	2 cut(s)	9, 144
BsaJI	CCNNGG	5 cut(s)	21, 81, 228, 312, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	369
BseDI	CCNNGG	5 cut(s)	21, 81, 228, 312, 452
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	295, 361
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	3 cut(s)	86, 128, 396
BsiSI	CCGG	2 cut(s)	228, 425
BslI	CCNNNNNNNGG	1 cut(s)	431
BsnI	GGCC	3 cut(s)	86, 128, 396
BspACI	CCGC	3 cut(s)	5, 129, 461
BspANI	GGCC	3 cut(s)	86, 128, 396
BspFNI	CGCG	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	5 cut(s)	21, 81, 228, 312, 452
BssNI	GRCGYC	2 cut(s)	9, 144
BssT1I	CCWWGG	3 cut(s)	21, 81, 452
Bst4CI	ACNGT	2 cut(s)	41, 280
BstACI	GRCGYC	2 cut(s)	9, 144
BstC8I	GCNNGC	4 cut(s)	7, 367, 398, 459
BstDSI	CCRYGG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	362
BstFNI	CGCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	3 cut(s)	366, 371, 463
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	227, 424
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	295, 361
BstV2I	GAAGAC	1 cut(s)	440
BsuRI	GGCC	3 cut(s)	86, 128, 396
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	4 cut(s)	7, 367, 398, 459
CseI	GACGC	1 cut(s)	434
CviAII	CATG	3 cut(s)	58, 244, 362
CviJI	RGCY	9 cut(s)	86, 106, 128, 152, 298, 339, 396, 457, 466
CviKI_1	RGCY	9 cut(s)	86, 106, 128, 152, 298, 339, 396, 457, 466
DraIII	CACNNNGTG	1 cut(s)	416
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	84
Eco130I	CCWWGG	3 cut(s)	21, 81, 452
Eco147I	AGGCCT	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	3 cut(s)	21, 81, 452
ErhI	CCWWGG	3 cut(s)	21, 81, 452
FaeI	CATG	3 cut(s)	61, 247, 365
FaiI	YATR	4 cut(s)	59, 89, 245, 363
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	3 cut(s)	57, 243, 361
FauI	CCCGC	1 cut(s)	454
Fnu4HI	GCNGC	3 cut(s)	129, 309, 375
FokI	GGATG	1 cut(s)	369
Fsp4HI	GCNGC	3 cut(s)	129, 309, 375
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	3 cut(s)	129, 309, 375
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	86, 128, 396
HapII	CCGG	2 cut(s)	228, 425
HgaI	GACGC	1 cut(s)	434
Hin1I	GRCGYC	2 cut(s)	9, 144
Hin1II	CATG	3 cut(s)	61, 247, 365
HincII	GTYRAC	4 cut(s)	76, 262, 274, 408
HindII	GTYRAC	4 cut(s)	76, 262, 274, 408
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	2 cut(s)	228, 425
HphI	GGTGA	2 cut(s)	10, 46
Hpy166II	GTNNAC	5 cut(s)	76, 220, 262, 274, 408
Hpy188I	TCNGA	3 cut(s)	32, 332, 471
Hpy188III	TCNNGA	2 cut(s)	186, 211
Hpy8I	GTNNAC	5 cut(s)	76, 220, 262, 274, 408
Hpy99I	CGWCG	2 cut(s)	41, 146
HpyAV	CCTTC	5 cut(s)	103, 171, 208, 311, 466
HpyCH4III	ACNGT	2 cut(s)	41, 280
HpyCH4IV	ACGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	366, 371, 463
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	2 cut(s)	9, 144
Hsp92II	CATG	3 cut(s)	61, 247, 365
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	8 cut(s)	150, 171, 241, 261, 312, 410, 414, 438
Lsp1109I	GCAGC	2 cut(s)	295, 361
LweI	GCATC	2 cut(s)	347, 477
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	16, 160
MboII	GAAGA	2 cut(s)	296, 440
MlsI	TGGCCA	1 cut(s)	86
MluNI	TGGCCA	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	8 cut(s)	19, 78, 118, 126, 167, 182, 326, 428
Mox20I	TGGCCA	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	86
MslI	CAYNNNNRTG	2 cut(s)	56, 355
Msp20I	TGGCCA	1 cut(s)	86
MspI	CCGG	2 cut(s)	228, 425
MspR9I	CCNGG	2 cut(s)	229, 426
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	366, 371, 463
NciI	CCSGG	2 cut(s)	229, 426
NlaIII	CATG	3 cut(s)	61, 247, 365
NmuCI	GTSAC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	287
PflFI	GACNNNGTC	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	3 cut(s)	130, 310, 376
PspEI	GGTNACC	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	41
RseI	CAYNNNNRTG	2 cut(s)	56, 355
SatI	GCNGC	3 cut(s)	129, 309, 375
ScrFI	CCNGG	2 cut(s)	229, 426
SetI	ASST	8 cut(s)	18, 23, 30, 147, 182, 193, 219, 337
SfaNI	GCATC	2 cut(s)	347, 477
SmiMI	CAYNNNNRTG	2 cut(s)	56, 355
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	3 cut(s)	5, 129, 461
SspMI	CTAG	1 cut(s)	392
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	227, 424
StyI	CCWWGG	3 cut(s)	21, 81, 452
TaaI	ACNGT	2 cut(s)	41, 280
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	120, 210
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	2 cut(s)	308, 374
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	1 cut(s)	392
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.