Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001719

Physical Location & Seq

Genomic Coordinates Forward (+)

9449843 .. 9451501

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCACCAGTTGCTCAAGAACTCATGGACTCGCCTCGTTTGCACTCTCAGTCCTCGCTCTCACTTCATCACTCTCGCTCATTGTTACCGGGGATACTGCTCTAACTCTTCTGGGATTAATAGTAACAACTCTGAGCTTGAAGAGTTATGGAGTTCAAAGGAGGGTTTAGTTCGGTGCTCGGCAAATCACGACCCTTTATCTCCAATAGGATTCTTGGAGCGAGCTGCAAAGGCCTACAGGGACAGGACCTCTGTAATCTATGGCTCTCTGAAATACACTTGGGTTCAAACCCATCAACGCTGCCTTAAATTAGCTTCTGCTCTGAACCAGTTGGGAATTTCTCGCGGTGATGTGGTTGCAACTTTGGCGCCAAATGTCCCAGCTATTAATGAGCTTCATTTTGCAGCTCCAATGGCTGGGGCAGTTCTTTCTAAAATCGTATTTGTCGATCACCAGTTACTTGGAATTGTTGATGGGGCACTTGAATTACTTGCTGAAAAAGCTGTTTCAAAACCGCCCATTGTAGTTTTAATTGCTGATTCTGATGGGTTATCATCTCCAAACGGCTCTACTTCAGAAACTAAACCACCTTATGCTTTTGCTTTGCGCAATAGGCTCAATGCCGGTTTATCTATGTACCTGCGCCTATGTTTCATTGCAATGGATGGTGCCTCATTTGGGGTTTGGCTGCTCAGGGTGGCCACTTCCTCACAAGGTGGAAGTAATGACAGGTGGCTCCCCACGACCGCCACAGATCCTGTTCAATATGGAAGAGACGGGTTTTGGCCGGTGATTCACTTTTATGGTCTCACAGTGACTTATGGTCCACGTACCTATTGCTCATGGAAACCTGAGTGGCACTCTCTTCCTTCAGATGAGAGATCGAAGCTTAAAGCTCGGCAAGGCGTGCAACATGTTGCTTTGGAAGGGGTTGACATAAAAGATCCTGTCACTATGGAAAGCGTACCGCCTGATGGTAAGACAATGGGTGAAATTATGTTCAGGGGAAACACTCTGATAAGTGGTTATCTTAAAGACTTGAAAGCAACAGAGGAAGCTTTCAAGGGTGGATGGTTTAGAAGTGGGGATTTAGCTGTGAAACATCCTGATAACTACATCGAAGTCAAGGACCGGTTGAAGGATGTGATTATATCTGGGGGGAGAGCACATAAGCACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

394

Amino Acids

43.27

Weight (kDa)

8.83

Isoelectric Point (pI)

29.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	72 - 144	6.5e-15	AMP-binding enzyme
AMP-binding	PF00501	263 - 344	5.1e-06	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17650
fragaria_vesca	FvH4_1g10560
malus_domestica	MD15G1233600.v1.1
prunus_persica	Prupe.7G179300_v2.0.a1
pyrus_communis	pycom15g20820
rosa_chinensis	RchiOBHm_Chr2g0097611 RchiOBHm_Chr2g0146681 RchiOBHm_Chr3g0449261 RchiOBHm_Chr3g0449271 RchiOBHm_Chr6g0268031
rosa_laevigata	RLG00000013936 RLG00000016728 RLG00000016729 RLG00000020214 RLG00000025843
rosa_multiflora	Rmu_sc0001839.1_g000028 Rmu_sc0001986.1_g000041 Rmu_sc0003567.1_g000017 Rmu_sc0004220.1_g000001 Rmu_sc0004874.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099970 Rroxscaffold_2G00144660 Rroxscaffold_7G00200080
rosa_rugosa	Rorug02G0067800 Rorug02G0067900 Rorug02G0396000 Rorug02G0619100 Rorug02G0619300 Rorug06G0039100
rosa_samantha	Rh2AG114200 Rh2AG452500 Rh2BG116900 Rh2CG118900 Rh2CG439400 Rh2DG117900 Rh2DG474200 Rh3AG017300 Rh3BG017400 Rh3CG016400 Rh3DG017700 Rh6AG158400 Rh6BG162400 Rh6CG156000
rosa_wichuraiana	Rw0G015740 Rw2G008930 Rw2G036950 Rw3G001320 Rw6G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	648
AccB1I	GGYRCC	2 cut(s)	367, 668
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccII	CGCG	1 cut(s)	345
AciI	CCGC	4 cut(s)	345, 515, 747, 968
AclWI	GGATC	2 cut(s)	749, 938
AcoI	YGGCCR	2 cut(s)	699, 785
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	2 cut(s)	558, 855
AcyI	GRCGYC	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	716
AfaI	GTAC	3 cut(s)	638, 832, 966
AfiI	CCNNNNNNNGG	4 cut(s)	416, 678, 974, 1138
AflIII	ACRYGT	1 cut(s)	913
AgeI	ACCGGT	1 cut(s)	1131
AgsI	TTSAA	9 cut(s)	140, 156, 287, 485, 510, 764, 1042, 1063, 1138
AhdI	GACNNNNNGTC	1 cut(s)	822
Alw21I	GWGCWC	2 cut(s)	179, 1168
Alw26I	GTCTC	2 cut(s)	768, 812
AlwI	GGATC	2 cut(s)	749, 938
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	3 cut(s)	231, 699, 785
ApeKI	GCWGC	4 cut(s)	224, 300, 404, 688
ApoI	RAATTY	1 cut(s)	336
AseI	ATTAAT	2 cut(s)	117, 387
AsiGI	ACCGGT	1 cut(s)	1131
AspLEI	GCGC	3 cut(s)	370, 609, 645
AspS9I	GGNCC	3 cut(s)	246, 824, 1129
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	4 cut(s)	359, 443, 802, 1001
AvaII	GGWCC	3 cut(s)	246, 824, 1129
BaeGI	GKGCMC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	701
BanI	GGYRCC	2 cut(s)	367, 668
Bbv12I	GWGCWC	2 cut(s)	179, 1168
BbvI	GCAGC	4 cut(s)	211, 287, 416, 675
BccI	CCATC	6 cut(s)	300, 467, 539, 659, 968, 1065
BceAI	ACGGC	1 cut(s)	580
BciVI	GTATCC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	768, 812
BfmI	CTRYAG	1 cut(s)	235
BfoI	RGCGCY	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	4 cut(s)	225, 301, 405, 689
BlsI	GCNGC	4 cut(s)	226, 302, 406, 690
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	3 cut(s)	246, 824, 1129
BmeRI	GACNNNNNGTC	1 cut(s)	822
BmgT120I	GGNCC	3 cut(s)	246, 824, 1129
BmiI	GGNNCC	3 cut(s)	369, 670, 737
BmrFI	CCNGG	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
Bpu10I	CCTNAGC	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	812
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	1131
Bsc4I	CCNNNNNNNGG	4 cut(s)	416, 678, 974, 1138
Bse118I	RCCGGY	3 cut(s)	623, 787, 1131
Bse1I	ACTGG	3 cut(s)	7, 328, 454
Bse3DI	GCAATG	2 cut(s)	654, 666
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	4 cut(s)	670, 1076, 1102, 1147
BseLI	CCNNNNNNNGG	4 cut(s)	416, 678, 974, 1138
BseMI	GCAATG	2 cut(s)	654, 666
BseMII	CTCAG	4 cut(s)	61, 123, 706, 843
BseNI	ACTGG	3 cut(s)	7, 328, 454
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	4 cut(s)	211, 287, 416, 675
BseYI	CCCAGC	2 cut(s)	379, 416
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	747
BshFI	GGCC	3 cut(s)	233, 701, 787
BshNI	GGYRCC	2 cut(s)	367, 668
BshTI	ACCGGT	1 cut(s)	1131
BsiEI	CGRYCG	1 cut(s)	747
BsiHKAI	GWGCWC	2 cut(s)	179, 1168
BsiSI	CCGG	4 cut(s)	88, 624, 788, 1132
BslFI	GGGAC	2 cut(s)	254, 362
BslI	CCNNNNNNNGG	4 cut(s)	416, 678, 974, 1138
BsmAI	GTCTC	2 cut(s)	768, 812
BsmBI	CGTCTC	1 cut(s)	768
BsmFI	GGGAC	2 cut(s)	254, 362
BsnI	GGCC	3 cut(s)	233, 701, 787
Bso31I	GGTCTC	1 cut(s)	812
Bsp1286I	GDGCHC	3 cut(s)	179, 481, 1168
Bsp143I	GATC	4 cut(s)	448, 754, 881, 943
BspACI	CCGC	4 cut(s)	345, 515, 747, 968
BspANI	GGCC	3 cut(s)	233, 701, 787
BspCNI	CTCAG	4 cut(s)	60, 124, 705, 844
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	369, 670, 737
BspMI	ACCTGC	1 cut(s)	648
BspPI	GGATC	2 cut(s)	749, 938
BspT107I	GGYRCC	2 cut(s)	367, 668
BspTNI	GGTCTC	1 cut(s)	812
BsrDI	GCAATG	2 cut(s)	654, 666
BsrFI	RCCGGY	3 cut(s)	623, 787, 1131
BsrI	ACTGG	3 cut(s)	7, 328, 454
BssAI	RCCGGY	3 cut(s)	623, 787, 1131
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	4 cut(s)	448, 754, 881, 943
BssNI	GRCGYC	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	814, 1178
Bst6I	CTCTTC	4 cut(s)	112, 135, 766, 870
BstACI	GRCGYC	1 cut(s)	368
BstAPI	GCANNNNNTGC	2 cut(s)	10, 907
BstBAI	YACGTR	1 cut(s)	830
BstC8I	GCNNGC	2 cut(s)	222, 908
BstDEI	CTNAG	4 cut(s)	47, 132, 692, 852
BstF5I	GGATG	4 cut(s)	670, 1076, 1102, 1147
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	3 cut(s)	370, 609, 645
BstKTI	GATC	4 cut(s)	451, 757, 884, 946
BstMAI	GTCTC	2 cut(s)	768, 812
BstMBI	GATC	4 cut(s)	448, 754, 881, 943
BstMCI	CGRYCG	1 cut(s)	747
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 39, 230, 365, 413, 500, 613, 907
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	481
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	4 cut(s)	211, 287, 416, 675
BstX2I	RGATCY	2 cut(s)	754, 943
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	2 cut(s)	754, 943
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	233, 701, 787
BtsCI	GGATG	4 cut(s)	670, 1076, 1102, 1147
BtsIMutI	CAGTG	1 cut(s)	819
BveI	ACCTGC	1 cut(s)	648
Cac8I	GCNNGC	2 cut(s)	222, 908
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	3 cut(s)	370, 609, 645
Cfr10I	RCCGGY	3 cut(s)	623, 787, 1131
Cfr13I	GGNCC	3 cut(s)	246, 824, 1129
Csp6I	GTAC	3 cut(s)	637, 831, 965
CspAI	ACCGGT	1 cut(s)	1131
CviAII	CATG	3 cut(s)	24, 843, 914
CviQI	GTAC	3 cut(s)	637, 831, 965
DdeI	CTNAG	4 cut(s)	47, 132, 692, 852
DinI	GGCGCC	1 cut(s)	369
DpnI	GATC	4 cut(s)	450, 756, 883, 945
DpnII	GATC	4 cut(s)	448, 754, 881, 943
DraIII	CACNNNGTG	1 cut(s)	716
DriI	GACNNNNNGTC	1 cut(s)	822
EaeI	YGGCCR	2 cut(s)	699, 785
Eam1104I	CTCTTC	4 cut(s)	112, 135, 766, 870
Eam1105I	GACNNNNNGTC	1 cut(s)	822
EarI	CTCTTC	4 cut(s)	112, 135, 766, 870
Eco147I	AGGCCT	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	812
Eco47I	GGWCC	3 cut(s)	246, 824, 1129
Eco57I	CTGAAG	2 cut(s)	558, 855
EcoO109I	RGGNCCY	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	369
EheI	GGCGCC	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	768
FaeI	CATG	3 cut(s)	27, 846, 917
FaqI	GGGAC	2 cut(s)	254, 362
FatI	CATG	3 cut(s)	23, 842, 913
Fnu4HI	GCNGC	4 cut(s)	225, 301, 405, 689
FokI	GGATG	4 cut(s)	677, 1083, 1089, 1154
Fsp4HI	GCNGC	4 cut(s)	225, 301, 405, 689
FspI	TGCGCA	1 cut(s)	608
GlaI	GCGC	3 cut(s)	369, 608, 644
GluI	GCNGC	4 cut(s)	225, 301, 405, 689
GsaI	CCCAGC	2 cut(s)	383, 420
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	233, 701, 787
HapII	CCGG	4 cut(s)	88, 624, 788, 1132
HhaI	GCGC	3 cut(s)	370, 609, 645
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	3 cut(s)	27, 846, 917
Hin6I	GCGC	3 cut(s)	368, 607, 643
HinP1I	GCGC	3 cut(s)	368, 607, 643
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HindIII	AAGCTT	2 cut(s)	887, 1056
HinfI	GANTC	4 cut(s)	28, 210, 539, 793
HpaII	CCGG	4 cut(s)	88, 624, 788, 1132
HphI	GGTGA	4 cut(s)	359, 443, 802, 1001
Hpy166II	GTNNAC	2 cut(s)	827, 934
Hpy188I	TCNGA	7 cut(s)	133, 270, 324, 544, 577, 874, 1017
Hpy188III	TCNNGA	3 cut(s)	16, 188, 1106
Hpy8I	GTNNAC	2 cut(s)	827, 934
HpyAV	CCTTC	3 cut(s)	879, 920, 1132
HpyCH4III	ACNGT	2 cut(s)	814, 1178
HpyCH4IV	ACGT	1 cut(s)	829
HpyCH4V	TGCA	7 cut(s)	4, 42, 227, 359, 404, 659, 910
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 39, 230, 365, 413, 500, 613, 907
HpyF3I	CTNAG	4 cut(s)	47, 132, 692, 852
HpySE526I	ACGT	1 cut(s)	829
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	27, 846, 917
HspAI	GCGC	3 cut(s)	368, 607, 643
KasI	GGCGCC	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	448, 754, 881, 943
LmnI	GCTCC	3 cut(s)	217, 412, 741
Lsp1109I	GCAGC	4 cut(s)	211, 287, 416, 675
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	5 cut(s)	83, 122, 456, 814, 949
MalI	GATC	4 cut(s)	450, 756, 883, 945
MboI	GATC	4 cut(s)	448, 754, 881, 943
MboII	GAAGA	4 cut(s)	99, 152, 783, 857
MflI	RGATCY	2 cut(s)	754, 943
MhlI	GDGCHC	3 cut(s)	179, 481, 1168
MlsI	TGGCCA	1 cut(s)	701
MluCI	AATT	6 cut(s)	308, 336, 465, 485, 531, 993
MluNI	TGGCCA	1 cut(s)	701
Mly113I	GGCGCC	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	7 cut(s)	44, 63, 154, 259, 682, 718, 1045
Mox20I	TGGCCA	1 cut(s)	701
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	6 cut(s)	117, 306, 387, 530, 891, 1032
MslI	CAYNNNNRTG	2 cut(s)	659, 801
Msp20I	TGGCCA	1 cut(s)	701
MspI	CCGG	4 cut(s)	88, 624, 788, 1132
MspR9I	CCNGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	8 cut(s)	10, 39, 230, 365, 413, 500, 613, 907
NarI	GGCGCC	1 cut(s)	368
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	4 cut(s)	448, 754, 881, 943
NlaIII	CATG	3 cut(s)	27, 846, 917
NlaIV	GGNNCC	3 cut(s)	369, 670, 737
NmeAIII	GCCGAG	2 cut(s)	158, 877
NmuCI	GTSAC	2 cut(s)	814, 949
NsbI	TGCGCA	1 cut(s)	608
NspI	RCATGY	1 cut(s)	917
PceI	AGGCCT	1 cut(s)	233
PciI	ACATGT	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	210, 539, 793
PflMI	CCANNNNNTGG	1 cut(s)	416
PinAI	ACCGGT	1 cut(s)	1131
PkrI	GCNGC	4 cut(s)	226, 302, 406, 690
PleI	GAGTC	1 cut(s)	22
PluTI	GGCGCC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	830
PpuMI	RGGWCCY	1 cut(s)	246
PscI	ACATGT	1 cut(s)	913
PshBI	ATTAAT	2 cut(s)	117, 387
Psp5II	RGGWCCY	1 cut(s)	246
PspFI	CCCAGC	2 cut(s)	379, 416
PspN4I	GGNNCC	3 cut(s)	369, 670, 737
PspPI	GGNCC	3 cut(s)	246, 824, 1129
PspPPI	RGGWCCY	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	2 cut(s)	754, 943
RsaI	GTAC	3 cut(s)	638, 832, 966
RsaNI	GTAC	3 cut(s)	637, 831, 965
RseI	CAYNNNNRTG	2 cut(s)	659, 801
SaqAI	TTAA	6 cut(s)	117, 306, 387, 530, 891, 1032
SatI	GCNGC	4 cut(s)	225, 301, 405, 689
Sau3AI	GATC	4 cut(s)	448, 754, 881, 943
Sau96I	GGNCC	3 cut(s)	246, 824, 1129
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	3 cut(s)	179, 481, 1168
SfcI	CTRYAG	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	369
SinI	GGWCC	3 cut(s)	246, 824, 1129
SmiMI	CAYNNNNRTG	2 cut(s)	659, 801
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	308, 336, 465, 485, 531, 993
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	4 cut(s)	345, 515, 747, 968
SspDI	GGCGCC	1 cut(s)	367
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	814, 1178
TaiI	ACGT	1 cut(s)	832
TaqI	TCGA	3 cut(s)	447, 884, 1119
TasI	AATT	6 cut(s)	308, 336, 465, 485, 531, 993
TfiI	GAWTC	3 cut(s)	210, 539, 793
Tru1I	TTAA	6 cut(s)	117, 306, 387, 530, 891, 1032
Tru9I	TTAA	6 cut(s)	117, 306, 387, 530, 891, 1032
TscAI	CASTG	1 cut(s)	819
TseFI	GTSAC	2 cut(s)	814, 949
TseI	GCWGC	4 cut(s)	224, 300, 404, 688
Tsp45I	GTSAC	2 cut(s)	814, 949
TspDTI	ATGAA	3 cut(s)	55, 386, 643
TspRI	CASTG	1 cut(s)	819
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	3 cut(s)	246, 824, 1129
VspI	ATTAAT	2 cut(s)	117, 387
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.