Rh2BG116900

acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001719
Physical Location & Seq
Forward (+)
9887894 .. 9901033
13140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG116900.1

Sequence Viewer

Length: 255 bp
ATGGACTCGCCTCAGAGTGACCGAAGGCCACTTCCTCACAAGGTGGAAGTAATGACAGGTGGCTCCCCACCACCACCACAGATCCTGTTCAATATGGAAGAGATGGGTTTTGGGGTGATTCACTTGTATACAAAGACTTATGGTCCAGGTATTGCTCATGGAAACCTGAGTGGGACTCTCTTCCTTCAGATGAGAGATCGAAGCTTAAAGCTCGACAAGGCGTGCAACATGTTGCTTTGGAAGAGGTTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

84

Amino Acids

9.47

Weight (kDa)

9.36

Isoelectric Point (pI)

68.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AclWI GGATC 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 1 cut(s) 91
AhdI GACNNNNNGTC 1 cut(s) 141
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 204, 211
AluI AGCT 2 cut(s) 204, 211
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 143
BccI CCATC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 143
BmeRI GACNNNNNGTC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BseBI CCWGG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 26, 158
BshFI GGCC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 81, 196
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 2 cut(s) 25, 159
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 76
BssMI GATC 2 cut(s) 81, 196
BssNAI GTATAC 1 cut(s) 129
Bst1107I GTATAC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 147
Bst6I CTCTTC 3 cut(s) 93, 185, 236
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 12, 167
BstKTI GATC 2 cut(s) 84, 199
BstMBI GATC 2 cut(s) 81, 196
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 2 cut(s) 158, 229
CviJI RGCY 4 cut(s) 28, 63, 204, 211
CviKI_1 RGCY 4 cut(s) 28, 63, 204, 211
DdeI CTNAG 2 cut(s) 12, 167
DpnI GATC 2 cut(s) 83, 198
DpnII GATC 2 cut(s) 81, 196
DraIII CACNNNGTG 1 cut(s) 43
DriI GACNNNNNGTC 1 cut(s) 141
Eam1104I CTCTTC 3 cut(s) 93, 185, 236
Eam1105I GACNNNNNGTC 1 cut(s) 141
EarI CTCTTC 3 cut(s) 93, 185, 236
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 2 cut(s) 161, 232
FaiI YATR 6 cut(s) 95, 129, 141, 159, 230, 253
FaqI GGGAC 1 cut(s) 187
FatI CATG 2 cut(s) 157, 228
FblI GTMKAC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 2 cut(s) 161, 232
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 3 cut(s) 5, 118, 175
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 129, 249
Hpy188I TCNGA 2 cut(s) 15, 189
Hpy8I GTNNAC 2 cut(s) 129, 249
HpyAV CCTTC 2 cut(s) 18, 194
HpyCH4V TGCA 1 cut(s) 225
HpyF3I CTNAG 2 cut(s) 12, 167
Hsp92II CATG 2 cut(s) 161, 232
Kzo9I GATC 2 cut(s) 81, 196
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 42, 98, 132, 159, 179
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 83, 198
MboI GATC 2 cut(s) 81, 196
MboII GAAGA 3 cut(s) 110, 172, 253
MflI RGATCY 1 cut(s) 81
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 3 cut(s) 21, 45, 237
MseI TTAA 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
NdeII GATC 2 cut(s) 81, 196
NlaIII CATG 2 cut(s) 161, 232
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PfeI GAWTC 1 cut(s) 118
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PscI ACATGT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 81
SaqAI TTAA 1 cut(s) 206
Sau3AI GATC 2 cut(s) 81, 196
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 147
SetI ASST 7 cut(s) 45, 61, 151, 168, 206, 213, 248
SinI GGWCC 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 145
TaqI TCGA 2 cut(s) 199, 213
TaqII GACCGA 1 cut(s) 36
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 143
XceI RCATGY 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.