Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001719

Physical Location & Seq

Genomic Coordinates Reverse (-)

48638189 .. 48639118

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCCTGTTTATCTATGGACTGTGCCTATGTTTCATTGCAATGGACGGCGCCTCATTTGGGGTTTGGCTACTCAGGGTGGTACTGACATTTGCCTAAGAAAAGTCACTCCAAAAGGCATATATGACAACATTGCTCTACACAATGTAACACACATGGGAGGGGCACCAACTGTGCTGAACATGATTGTTAATTCGCCAGAGAGTGACCGAAGACCACTTCCTCACAAGGTGGAAGTAATGACAGGTGGCTCCCCACCCCTTCCACAGATCCTGTTCAATATGGAAGAGATGGGTTTTAGGGTGATTCACTTGTATGGTCTCACAGAGACTTATGGTCCAGGGACCTATTGCTCATGGAAACCTGAGTGGGACTCTCTTCCTTCAGATGAGAGATCGAAGCTTAAAGCTCGGCAAGGTGTGCAGCATGTTGCTTTGGAAGAGTTTGACATAAAAGATCCCGTCACCATGGAAAGTGTACCGCCTGATGGACCGGTTGAAGATGTGATTATATCTGGGGGAGAGAACATAAGCACAGTTGAGGTTGAAACAGTTTTGTTTAGCTATCCAGCAGTTCTTGAGGCTGCAATTGTTGCAAGGCCTGATAATCATTGGGGACAAATTCCTTGTGCATTTGTGAAATTGAAGGATGGCTTTGATGTGAATGAGCAAGAACTAATTGAGTTCTGCCGCGATCATATGCCTCATTACATTGCACCCCGGACAGTCATTTTCGATGATATGCCAAAGACTTCAACAGGAAAGATACAAAAATTCGTTCTCAGAGAAAAAGCTAAGGTCTTGCGCAGCCTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

272

Amino Acids

30.4

Weight (kDa)

5.73

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	3 - 164	3.6e-23	AMP-binding enzyme
AMP-binding_C	PF13193	180 - 254	9.3e-20	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17650
fragaria_vesca	FvH4_1g10560
malus_domestica	MD15G1233600.v1.1
prunus_persica	Prupe.7G179300_v2.0.a1
pyrus_communis	pycom15g20820
rosa_chinensis	RchiOBHm_Chr2g0097611 RchiOBHm_Chr2g0146681 RchiOBHm_Chr3g0449261 RchiOBHm_Chr3g0449271 RchiOBHm_Chr6g0268031
rosa_laevigata	RLG00000013936 RLG00000016728 RLG00000016729 RLG00000020214 RLG00000025843
rosa_multiflora	Rmu_sc0001839.1_g000028 Rmu_sc0001986.1_g000041 Rmu_sc0003567.1_g000017 Rmu_sc0004220.1_g000001 Rmu_sc0004874.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099970 Rroxscaffold_2G00144660 Rroxscaffold_7G00200080
rosa_rugosa	Rorug02G0067800 Rorug02G0067900 Rorug02G0396000 Rorug02G0619100 Rorug02G0619300 Rorug06G0039100
rosa_samantha	Rh2AG114200 Rh2AG452500 Rh2BG116900 Rh2CG118900 Rh2CG439400 Rh2DG117900 Rh2DG474200 Rh3AG017300 Rh3BG017400 Rh3CG016400 Rh3DG017700 Rh6AG158400 Rh6BG162400 Rh6CG156000
rosa_wichuraiana	Rw0G015740 Rw2G008930 Rw2G036950 Rw3G001320 Rw6G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	803
AccB1I	GGYRCC	2 cut(s)	48, 163
AccII	CGCG	1 cut(s)	690
AciI	CCGC	2 cut(s)	479, 688
AclWI	GGATC	2 cut(s)	262, 449
AcsI	RAATTY	2 cut(s)	618, 770
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	49
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	2 cut(s)	82, 477
AfiI	CCNNNNNNNGG	2 cut(s)	58, 485
AgeI	ACCGGT	1 cut(s)	490
AgsI	TTSAA	5 cut(s)	277, 497, 545, 643, 753
AhdI	GACNNNNNGTC	1 cut(s)	333
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	4 cut(s)	400, 407, 561, 791
AluI	AGCT	4 cut(s)	400, 407, 561, 791
Alw26I	GTCTC	2 cut(s)	320, 323
AlwI	GGATC	2 cut(s)	262, 449
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	421, 581, 804
ApoI	RAATTY	2 cut(s)	618, 770
AsiGI	ACCGGT	1 cut(s)	490
AspLEI	GCGC	2 cut(s)	51, 804
AspS9I	GGNCC	3 cut(s)	335, 342, 488
AsuC2I	CCSGG	1 cut(s)	718
AsuHPI	GGTGA	2 cut(s)	313, 454
AvaII	GGWCC	3 cut(s)	335, 342, 488
BaeGI	GKGCMC	1 cut(s)	166
BanI	GGYRCC	2 cut(s)	48, 163
BbsI	GAAGAC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	433, 568
BccI	CCATC	3 cut(s)	283, 479, 641
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	2 cut(s)	320, 323
BfoI	RGCGCY	1 cut(s)	52
BisI	GCNGC	4 cut(s)	422, 582, 688, 805
BlsI	GCNGC	4 cut(s)	423, 583, 689, 806
Bme1390I	CCNGG	2 cut(s)	339, 718
Bme18I	GGWCC	3 cut(s)	335, 342, 488
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmgT120I	GGNCC	3 cut(s)	335, 342, 488
BmiI	GGNNCC	4 cut(s)	50, 165, 250, 343
BmrFI	CCNGG	2 cut(s)	339, 718
BpiI	GAAGAC	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu10I	CCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	718
BsaHI	GRCGYC	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	3 cut(s)	338, 465, 716
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 485
Bse118I	RCCGGY	1 cut(s)	490
Bse3DI	GCAATG	4 cut(s)	34, 46, 129, 708
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	338, 465, 716
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	58, 485
BseMI	GCAATG	4 cut(s)	34, 46, 129, 708
BseMII	CTCAG	3 cut(s)	86, 354, 793
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	433, 568
BsgI	GTGCAG	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	1 cut(s)	598
BshNI	GGYRCC	2 cut(s)	48, 163
BshTI	ACCGGT	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	491, 718
BslFI	GGGAC	3 cut(s)	355, 383, 627
BslI	CCNNNNNNNGG	2 cut(s)	58, 485
BsmAI	GTCTC	2 cut(s)	320, 323
BsmFI	GGGAC	3 cut(s)	355, 383, 627
BsnI	GGCC	1 cut(s)	598
Bso31I	GGTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	4 cut(s)	267, 392, 454, 691
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	2 cut(s)	479, 688
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	3 cut(s)	85, 355, 792
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	4 cut(s)	50, 165, 250, 343
BspPI	GGATC	2 cut(s)	262, 449
BspT107I	GGYRCC	2 cut(s)	48, 163
BspTNI	GGTCTC	1 cut(s)	323
BsrDI	GCAATG	4 cut(s)	34, 46, 129, 708
BsrFI	RCCGGY	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	3 cut(s)	338, 465, 716
BssMI	GATC	4 cut(s)	267, 392, 454, 691
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	5 cut(s)	22, 172, 535, 550, 724
Bst6I	CTCTTC	3 cut(s)	279, 381, 432
BstACI	GRCGYC	1 cut(s)	49
BstAPI	GCANNNNNTGC	2 cut(s)	418, 590
BstDEI	CTNAG	5 cut(s)	72, 95, 363, 779, 792
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	1 cut(s)	690
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 804
BstKTI	GATC	4 cut(s)	270, 395, 457, 694
BstMAI	GTCTC	2 cut(s)	320, 323
BstMBI	GATC	4 cut(s)	267, 392, 454, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 590
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	2 cut(s)	337, 716
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	433, 568
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	267, 454
BstYI	RGATCY	2 cut(s)	267, 454
BsuRI	GGCC	1 cut(s)	598
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	652
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	2 cut(s)	51, 804
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	3 cut(s)	335, 342, 488
Csp6I	GTAC	2 cut(s)	81, 476
CspAI	ACCGGT	1 cut(s)	490
CviAII	CATG	5 cut(s)	154, 181, 354, 425, 466
CviQI	GTAC	2 cut(s)	81, 476
DdeI	CTNAG	5 cut(s)	72, 95, 363, 779, 792
DinI	GGCGCC	1 cut(s)	50
DpnI	GATC	4 cut(s)	269, 394, 456, 693
DpnII	GATC	4 cut(s)	267, 392, 454, 691
DraIII	CACNNNGTG	1 cut(s)	229
DriI	GACNNNNNGTC	1 cut(s)	333
Eam1104I	CTCTTC	3 cut(s)	279, 381, 432
Eam1105I	GACNNNNNGTC	1 cut(s)	333
EarI	CTCTTC	3 cut(s)	279, 381, 432
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	598
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	3 cut(s)	335, 342, 488
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	465
EgeI	GGCGCC	1 cut(s)	50
EheI	GGCGCC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	5 cut(s)	157, 184, 357, 428, 469
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	3 cut(s)	355, 383, 627
FatI	CATG	5 cut(s)	153, 180, 353, 424, 465
FauNDI	CATATG	1 cut(s)	696
Fnu4HI	GCNGC	4 cut(s)	422, 582, 688, 805
FokI	GGATG	1 cut(s)	659
Fsp4HI	GCNGC	4 cut(s)	422, 582, 688, 805
FspI	TGCGCA	1 cut(s)	803
GlaI	GCGC	2 cut(s)	50, 803
GluI	GCNGC	4 cut(s)	422, 582, 688, 805
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	2 cut(s)	491, 718
HhaI	GCGC	2 cut(s)	51, 804
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	5 cut(s)	157, 184, 357, 428, 469
Hin6I	GCGC	2 cut(s)	49, 802
HinP1I	GCGC	2 cut(s)	49, 802
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	2 cut(s)	304, 371
HpaII	CCGG	2 cut(s)	491, 718
HphI	GGTGA	2 cut(s)	313, 454
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	385, 782
Hpy188III	TCNNGA	2 cut(s)	575, 813
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	269, 390, 637
HpyCH4III	ACNGT	5 cut(s)	22, 172, 535, 550, 724
HpyCH4V	TGCA	6 cut(s)	39, 421, 584, 593, 629, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 590
HpyF3I	CTNAG	5 cut(s)	72, 95, 363, 779, 792
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	5 cut(s)	157, 184, 357, 428, 469
HspAI	GCGC	2 cut(s)	49, 802
KasI	GGCGCC	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	267, 392, 454, 691
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	2 cut(s)	433, 568
MaeIII	GTNAC	4 cut(s)	103, 145, 203, 460
MalI	GATC	4 cut(s)	269, 394, 456, 693
MboI	GATC	4 cut(s)	267, 392, 454, 691
MboII	GAAGA	5 cut(s)	222, 296, 368, 449, 509
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	267, 454
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	6 cut(s)	190, 585, 618, 638, 675, 770
Mly113I	GGCGCC	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	6 cut(s)	62, 152, 231, 532, 571, 711
MseI	TTAA	2 cut(s)	189, 402
MslI	CAYNNNNRTG	2 cut(s)	39, 312
MspI	CCGG	2 cut(s)	491, 718
MspR9I	CCNGG	2 cut(s)	339, 718
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	418, 590
NarI	GGCGCC	1 cut(s)	49
NciI	CCSGG	1 cut(s)	718
NcoI	CCATGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	696
NdeII	GATC	4 cut(s)	267, 392, 454, 691
NlaIII	CATG	5 cut(s)	157, 184, 357, 428, 469
NlaIV	GGNNCC	4 cut(s)	50, 165, 250, 343
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	3 cut(s)	103, 203, 460
NsbI	TGCGCA	1 cut(s)	803
NspI	RCATGY	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	598
PfeI	GAWTC	1 cut(s)	304
PinAI	ACCGGT	1 cut(s)	490
PkrI	GCNGC	4 cut(s)	423, 583, 689, 806
PleI	GAGTC	1 cut(s)	365
PluTI	GGCGCC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	365
PpuMI	RGGWCCY	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	4 cut(s)	50, 165, 250, 343
PspPI	GGNCC	3 cut(s)	335, 342, 488
PspPPI	RGGWCCY	1 cut(s)	342
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	267, 454
RsaI	GTAC	2 cut(s)	82, 477
RsaNI	GTAC	2 cut(s)	81, 476
RseI	CAYNNNNRTG	2 cut(s)	39, 312
SaqAI	TTAA	2 cut(s)	189, 402
SatI	GCNGC	4 cut(s)	422, 582, 688, 805
Sau3AI	GATC	4 cut(s)	267, 392, 454, 691
Sau96I	GGNCC	3 cut(s)	335, 342, 488
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	339, 718
SduI	GDGCHC	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	50
SinI	GGWCC	3 cut(s)	335, 342, 488
SmiMI	CAYNNNNRTG	2 cut(s)	39, 312
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	6 cut(s)	190, 585, 618, 638, 675, 770
SseBI	AGGCCT	1 cut(s)	598
SsiI	CCGC	2 cut(s)	479, 688
SspDI	GGCGCC	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	598
StyD4I	CCNGG	2 cut(s)	337, 716
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	5 cut(s)	22, 172, 535, 550, 724
TaqI	TCGA	2 cut(s)	395, 732
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	6 cut(s)	190, 585, 618, 638, 675, 770
TauI	GCSGC	1 cut(s)	690
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	189, 402
Tru9I	TTAA	2 cut(s)	189, 402
TseFI	GTSAC	3 cut(s)	103, 203, 460
TseI	GCWGC	3 cut(s)	421, 581, 804
Tsp45I	GTSAC	3 cut(s)	103, 203, 460
TspDTI	ATGAA	1 cut(s)	23
VpaK11BI	GGWCC	3 cut(s)	335, 342, 488
XapI	RAATTY	2 cut(s)	618, 770
XceI	RCATGY	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.