Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001719

Physical Location & Seq

Genomic Coordinates Forward (+)

9473358 .. 9473953

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016729

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGATGGTGCCTCATTTGGGGTTTGGCAGCGCAGGGTGGTACTCACATTTGCCTCAGGAAAGTCGCTGCAATTAAAAGGCATATTCGACAATATTGCTCTGCATAATGTGACACACATGGGAGGGGCACCAACTGTGCTGAACATGATTGTTAATTCACCGGTGAATGACCAAATGCCACTTCCTCACAAGGTGGAAGTAATGACGGGCGGCTCACTTCCCCCACCGCAGATCCTTTTTGAGATGGAAGAGATGGGTTTTGGGGTGACCGCTTGTATGGTCAAACAGAAACTTATGCTGCAGGGTCGACATATTGCGTATAGAAACCTGAGTGGGACTCTCTTCCTTCGGATGAGAGATCGAAGCTTAAAGCTCGGCAAGGCATGCAGCATGTTGCTTTGGAAGAGGGGAAACACTGTGATAAGTGGTTACCTTAAAGACTTGAAGCAACAGAGGAAGCTTTTAAGGGTGGATGGTTTAGAAGTGGCCGGGGATTTAGCTGCGAAACATCCTGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

174

Amino Acids

19.16

Weight (kDa)

9.89

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17650
fragaria_vesca	FvH4_1g10560
malus_domestica	MD15G1233600.v1.1
prunus_persica	Prupe.7G179300_v2.0.a1
pyrus_communis	pycom15g20820
rosa_chinensis	RchiOBHm_Chr2g0097611 RchiOBHm_Chr2g0146681 RchiOBHm_Chr3g0449261 RchiOBHm_Chr3g0449271 RchiOBHm_Chr6g0268031
rosa_laevigata	RLG00000013936 RLG00000016728 RLG00000016729 RLG00000020214 RLG00000025843
rosa_multiflora	Rmu_sc0001839.1_g000028 Rmu_sc0001986.1_g000041 Rmu_sc0003567.1_g000017 Rmu_sc0004220.1_g000001 Rmu_sc0004874.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099970 Rroxscaffold_2G00144660 Rroxscaffold_7G00200080
rosa_rugosa	Rorug02G0067800 Rorug02G0067900 Rorug02G0396000 Rorug02G0619100 Rorug02G0619300 Rorug06G0039100
rosa_samantha	Rh2AG114200 Rh2AG452500 Rh2BG116900 Rh2CG118900 Rh2CG439400 Rh2DG117900 Rh2DG474200 Rh3AG017300 Rh3BG017400 Rh3CG016400 Rh3DG017700 Rh6AG158400 Rh6BG162400 Rh6CG156000
rosa_wichuraiana	Rw0G015740 Rw2G008930 Rw2G036950 Rw3G001320 Rw6G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	8, 127
AccI	GTMKAC	1 cut(s)	307
AciI	CCGC	3 cut(s)	210, 227, 270
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	486
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgeI	ACCGGT	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	445
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	4 cut(s)	366, 373, 460, 500
AluI	AGCT	4 cut(s)	366, 373, 460, 500
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	5 cut(s)	28, 67, 298, 387, 500
AsiGI	ACCGGT	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	3 cut(s)	150, 175, 277
AxyI	CCTNAGG	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	2 cut(s)	8, 127
BbvI	GCAGC	5 cut(s)	40, 54, 285, 399, 487
BccI	CCATC	3 cut(s)	238, 247, 467
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BcnI	CCSGG	1 cut(s)	490
BfmI	CTRYAG	1 cut(s)	299
BisI	GCNGC	6 cut(s)	29, 68, 211, 299, 388, 501
BlsI	GCNGC	6 cut(s)	30, 69, 212, 300, 389, 502
Bme1390I	CCNGG	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	10, 129
BmrFI	CCNGG	1 cut(s)	490
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpuMI	CCSGG	1 cut(s)	490
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse118I	RCCGGY	1 cut(s)	160
Bse21I	CCTNAGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	4 cut(s)	10, 357, 478, 508
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	69, 320
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	5 cut(s)	40, 54, 285, 399, 487
BshFI	GGCC	1 cut(s)	488
BshNI	GGYRCC	2 cut(s)	8, 127
BshTI	ACCGGT	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	161, 489
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	2 cut(s)	231, 358
BspACI	CCGC	3 cut(s)	210, 227, 270
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	2 cut(s)	68, 321
BspLI	GGNNCC	2 cut(s)	10, 129
BspMAI	CTGCAG	1 cut(s)	303
BspPI	GGATC	1 cut(s)	226
BspT107I	GGYRCC	2 cut(s)	8, 127
BsrFI	RCCGGY	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	231, 358
Bst4CI	ACNGT	2 cut(s)	136, 418
Bst6I	CTCTTC	3 cut(s)	243, 347, 398
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	55, 329
BstEII	GGTNACC	2 cut(s)	265, 428
BstF5I	GGATG	4 cut(s)	10, 357, 478, 508
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	2 cut(s)	234, 361
BstMBI	GATC	2 cut(s)	231, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNSI	RCATGY	2 cut(s)	387, 394
BstPI	GGTNACC	2 cut(s)	265, 428
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	5 cut(s)	40, 54, 285, 399, 487
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	4 cut(s)	10, 357, 478, 508
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	385
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	41
CspAI	ACCGGT	1 cut(s)	160
CviAII	CATG	4 cut(s)	118, 145, 384, 391
CviJI	RGCY	6 cut(s)	213, 366, 373, 460, 488, 500
CviKI_1	RGCY	6 cut(s)	213, 366, 373, 460, 488, 500
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	55, 329
DpnI	GATC	2 cut(s)	233, 360
DpnII	GATC	2 cut(s)	231, 358
DraIII	CACNNNGTG	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	3 cut(s)	243, 347, 398
EarI	CTCTTC	3 cut(s)	243, 347, 398
Eco81I	CCTNAGG	1 cut(s)	55
Eco91I	GGTNACC	2 cut(s)	265, 428
EcoO65I	GGTNACC	2 cut(s)	265, 428
FaeI	CATG	4 cut(s)	121, 148, 387, 394
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	4 cut(s)	117, 144, 383, 390
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	6 cut(s)	29, 68, 211, 299, 388, 501
FokI	GGATG	4 cut(s)	17, 364, 485, 495
Fsp4HI	GCNGC	6 cut(s)	29, 68, 211, 299, 388, 501
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	6 cut(s)	29, 68, 211, 299, 388, 501
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	2 cut(s)	161, 489
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	121, 148, 387, 394
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	308
HindII	GTYRAC	1 cut(s)	308
HindIII	AAGCTT	2 cut(s)	364, 458
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	2 cut(s)	161, 489
HphI	GGTGA	3 cut(s)	150, 175, 277
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	2 cut(s)	57, 512
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	2 cut(s)	136, 418
HpyCH4V	TGCA	4 cut(s)	70, 103, 301, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	2 cut(s)	55, 329
Hsp92II	CATG	4 cut(s)	121, 148, 387, 394
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	231, 358
LpnPI	CCDG	6 cut(s)	19, 42, 174, 287, 341, 502
Lsp1109I	GCAGC	5 cut(s)	40, 54, 285, 399, 487
MaeIII	GTNAC	3 cut(s)	109, 265, 428
MalI	GATC	2 cut(s)	233, 360
MboI	GATC	2 cut(s)	231, 358
MboII	GAAGA	3 cut(s)	260, 334, 415
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	3 cut(s)	71, 154, 517
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	6 cut(s)	22, 64, 116, 195, 399, 447
MseI	TTAA	6 cut(s)	74, 153, 368, 435, 464, 520
MspI	CCGG	2 cut(s)	161, 489
MspR9I	CCNGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	384
NciI	CCSGG	1 cut(s)	490
NdeII	GATC	2 cut(s)	231, 358
NlaIII	CATG	4 cut(s)	121, 148, 387, 394
NlaIV	GGNNCC	2 cut(s)	10, 129
NmeAIII	GCCGAG	1 cut(s)	354
NmuCI	GTSAC	2 cut(s)	109, 265
NspI	RCATGY	2 cut(s)	387, 394
PaeI	GCATGC	1 cut(s)	387
PinAI	ACCGGT	1 cut(s)	160
PkrI	GCNGC	6 cut(s)	30, 69, 212, 300, 389, 502
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PspEI	GGTNACC	2 cut(s)	265, 428
PspN4I	GGNNCC	2 cut(s)	10, 129
PstI	CTGCAG	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SalI	GTCGAC	1 cut(s)	306
SaqAI	TTAA	6 cut(s)	74, 153, 368, 435, 464, 520
SatI	GCNGC	6 cut(s)	29, 68, 211, 299, 388, 501
Sau3AI	GATC	2 cut(s)	231, 358
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	7 cut(s)	195, 330, 368, 375, 435, 462, 502
SfcI	CTRYAG	1 cut(s)	299
SgrAI	CRCCGGYG	1 cut(s)	160
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	3 cut(s)	71, 154, 517
SsiI	CCGC	3 cut(s)	210, 227, 270
SspI	AATATT	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	136, 418
TaqI	TCGA	3 cut(s)	87, 307, 361
TasI	AATT	3 cut(s)	71, 154, 517
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	6 cut(s)	74, 153, 368, 435, 464, 520
Tru9I	TTAA	6 cut(s)	74, 153, 368, 435, 464, 520
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	2 cut(s)	109, 265
TseI	GCWGC	5 cut(s)	28, 67, 298, 387, 500
Tsp45I	GTSAC	2 cut(s)	109, 265
TspRI	CASTG	1 cut(s)	421
XceI	RCATGY	2 cut(s)	387, 394
XmiI	GTMKAC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.