Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001719

Physical Location & Seq

Genomic Coordinates Forward (+)

1087915 .. 1096696

Gene Structure 8782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTATGGCTCTCTACAATACATTTGGGCTCAAACCCATCAACGTTGCCTCAAATTAGCTTCTGCTCTGACCCAGTTAGGAATTTCTCACGGTGATGTGGTGAAAAAAACTTTGGCACCAAATGTCCCAACTATGCATGAACTCTATTTTGCAGCTCCAATGGCTAAGGCAGTTCTTTATACACATAATGCACGCCTTGATTCAGCTATGATATATGTTCTTCTTAGTCATTTTGAAGCTAAAATCATCTTTGTCGATCACCAATTACTTGGAATTGTTGATGGAGCACTTGAATTACTTGCCAAAAAAGCTGATTCAAAACTACCGGTTGTAGTGATGATCAACCCTATCAGTGTGGATTACACCTCTGGCACAACATCAAGGCCGAAGGGGGTTGTTTATAGTCACCGGGATGTATATCTCAATTCACTAGCTACAGTTTTGCTTCATGGAATAGGATCAATGCCTGTTTATCTATGGACTGTGCCTATGTTTCATTGCAATGGACGGTGCCTCATTTGGGGTTTGGCTGCTCAGGGTGGTACTAACATTTGCCTAAGAAAAGTCACTCCAAAAGGCATATATGACAACATTGCTCTACACAATGTAACACACATGGGAGGGGCACCAACTGTGCTGAACATGATTGTTAATTCACCAGAAAGTGACCGAAGACCACTTCCTCACAAGGTGGAAGTAATGACAGGTGGCTCCCCACCCCCGCCACAGATCCTGTTCAATATGGAAGAGATGGGTTTTAGGGGACCTACATGCTCATGGAAACCTGAGTGGGACTCTCTTCCTTCAGATGAGAGATCGAAGCTTAAAGCTCGGCAAGGTGTGCAGCATGTTGCTTTGGAAGAGTTTGACATAAAAGATCCCGTCACCATGGAAAGTGTACCGCCAGATGGTAAGACAATGGCTTTTAAAGGTGGATGGTTTAGAAGTGGGGATTTAGCTAAGAAACATCCTGATAAATATATCAAAGTTAAGGACCGGTTGAAGGATGTGATTATATCTGGGGGAGAGAACATAAGCACAGTTGATGTTGAAACAGTTTTGTTTAGCCATCCAGCAGTTCTTGAGGCTGCAATTGTTGCAAGGCCTGATAATCATTGGGGACAAACTCCTTATGCATTTGTGAAATTGAAGGATGGCTTTGATGTGAATGCGCAAGAACTAATTGAGTTCTGCCGCGATCATATGCCTCATTACATGGCACCCCGGACAGTCATTTTCGATGATATGCCAAAGACTTCAACAAGAAAGATACAAAAATTAGTTCTCAGAGAAAAAGCTAAGGTCTTGCGCATATATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

440

Amino Acids

49.08

Weight (kDa)

8.9

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	7 - 252	1.7e-42	AMP-binding enzyme
AMP-binding_C	PF13193	350 - 423	3.4e-19	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17650
fragaria_vesca	FvH4_1g10560
malus_domestica	MD15G1233600.v1.1
prunus_persica	Prupe.7G179300_v2.0.a1
pyrus_communis	pycom15g20820
rosa_chinensis	RchiOBHm_Chr2g0097611 RchiOBHm_Chr2g0146681 RchiOBHm_Chr3g0449261 RchiOBHm_Chr3g0449271 RchiOBHm_Chr6g0268031
rosa_laevigata	RLG00000013936 RLG00000016728 RLG00000016729 RLG00000020214 RLG00000025843
rosa_multiflora	Rmu_sc0001839.1_g000028 Rmu_sc0001986.1_g000041 Rmu_sc0003567.1_g000017 Rmu_sc0004220.1_g000001 Rmu_sc0004874.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099970 Rroxscaffold_2G00144660 Rroxscaffold_7G00200080
rosa_rugosa	Rorug02G0067800 Rorug02G0067900 Rorug02G0396000 Rorug02G0619100 Rorug02G0619300 Rorug06G0039100
rosa_samantha	Rh2AG114200 Rh2AG452500 Rh2BG116900 Rh2CG118900 Rh2CG439400 Rh2DG117900 Rh2DG474200 Rh3AG017300 Rh3BG017400 Rh3CG016400 Rh3DG017700 Rh6AG158400 Rh6BG162400 Rh6CG156000
rosa_wichuraiana	Rw0G015740 Rw2G008930 Rw2G036950 Rw3G001320 Rw6G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1173, 1310
AccB1I	GGYRCC	4 cut(s)	115, 510, 625, 1219
AccII	CGCG	1 cut(s)	1197
AciI	CCGC	3 cut(s)	722, 902, 1195
AclI	AACGTT	1 cut(s)	43
AclWI	GGATC	3 cut(s)	466, 724, 872
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	789
AdeI	CACNNNGTG	1 cut(s)	691
AfaI	GTAC	2 cut(s)	544, 900
AfiI	CCNNNNNNNGG	3 cut(s)	520, 908, 1003
AgeI	ACCGGT	2 cut(s)	325, 996
AgsI	TTSAA	8 cut(s)	236, 293, 318, 739, 1003, 1052, 1150, 1260
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
Alw21I	GWGCWC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	466, 724, 872
AlwNI	CAGNNNCTG	1 cut(s)	733
AoxI	GGCC	2 cut(s)	383, 1103
ApeKI	GCWGC	4 cut(s)	152, 530, 844, 1088
ApoI	RAATTY	1 cut(s)	81
AsiGI	ACCGGT	2 cut(s)	325, 996
AspLEI	GCGC	2 cut(s)	1174, 1311
AspS9I	GGNCC	2 cut(s)	764, 994
AsuC2I	CCSGG	2 cut(s)	410, 1225
AsuHPI	GGTGA	6 cut(s)	104, 112, 251, 398, 648, 877
AvaII	GGWCC	2 cut(s)	764, 994
BaeGI	GKGCMC	1 cut(s)	628
BanI	GGYRCC	4 cut(s)	115, 510, 625, 1219
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	679
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	4 cut(s)	164, 517, 856, 1075
BccI	CCATC	7 cut(s)	45, 275, 745, 902, 930, 1077, 1148
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	2 cut(s)	410, 1225
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	435
BisI	GCNGC	5 cut(s)	153, 531, 845, 1089, 1195
BlsI	GCNGC	5 cut(s)	154, 532, 846, 1090, 1196
Bme1390I	CCNGG	2 cut(s)	410, 1225
Bme18I	GGWCC	2 cut(s)	764, 994
BmgT120I	GGNCC	2 cut(s)	764, 994
BmiI	GGNNCC	6 cut(s)	117, 512, 627, 712, 765, 1221
BmrFI	CCNGG	2 cut(s)	410, 1225
BmrI	ACTGGG	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	679
BplI	GAGNNNNNCTC	2 cut(s)	779, 811
Bpu10I	CCTNAGC	3 cut(s)	165, 534, 1299
BpuEI	CTTGAG	1 cut(s)	1103
BpuMI	CCSGG	2 cut(s)	410, 1225
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	888, 1223
BsaWI	WCCGGW	2 cut(s)	325, 996
Bsc4I	CCNNNNNNNGG	3 cut(s)	520, 908, 1003
Bse118I	RCCGGY	2 cut(s)	325, 996
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	3 cut(s)	496, 508, 591
Bse8I	GATNNNNATC	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	888, 1223
BseGI	GGATG	6 cut(s)	418, 941, 967, 1012, 1069, 1159
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	3 cut(s)	520, 908, 1003
BseMI	GCAATG	3 cut(s)	496, 508, 591
BseMII	CTCAG	3 cut(s)	548, 777, 1300
BseNI	ACTGG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	4 cut(s)	164, 517, 856, 1075
BsgI	GTGCAG	1 cut(s)	863
Bsh1236I	CGCG	1 cut(s)	1197
BshFI	GGCC	2 cut(s)	385, 1105
BshNI	GGYRCC	4 cut(s)	115, 510, 625, 1219
BshTI	ACCGGT	2 cut(s)	325, 996
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	4 cut(s)	326, 409, 997, 1225
BslFI	GGGAC	4 cut(s)	110, 777, 806, 1134
BslI	CCNNNNNNNGG	3 cut(s)	520, 908, 1003
BsmFI	GGGAC	4 cut(s)	110, 777, 806, 1134
BsmI	GAATGC	1 cut(s)	1174
BsnI	GGCC	2 cut(s)	385, 1105
Bsp1286I	GDGCHC	3 cut(s)	31, 289, 628
Bsp143I	GATC	7 cut(s)	256, 339, 458, 729, 815, 877, 1198
Bsp19I	CCATGG	1 cut(s)	888
BspACI	CCGC	3 cut(s)	722, 902, 1195
BspANI	GGCC	2 cut(s)	385, 1105
BspCNI	CTCAG	3 cut(s)	547, 778, 1299
BspFNI	CGCG	1 cut(s)	1197
BspLI	GGNNCC	6 cut(s)	117, 512, 627, 712, 765, 1221
BspPI	GGATC	3 cut(s)	466, 724, 872
BspT107I	GGYRCC	4 cut(s)	115, 510, 625, 1219
BsrDI	GCAATG	3 cut(s)	496, 508, 591
BsrFI	RCCGGY	2 cut(s)	325, 996
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	2 cut(s)	325, 996
BssECI	CCNNGG	2 cut(s)	888, 1223
BssMI	GATC	7 cut(s)	256, 339, 458, 729, 815, 877, 1198
BssT1I	CCWWGG	1 cut(s)	888
Bst4CI	ACNGT	8 cut(s)	92, 439, 484, 510, 634, 1042, 1057, 1231
Bst6I	CTCTTC	3 cut(s)	741, 804, 855
BstAPI	GCANNNNNTGC	2 cut(s)	841, 1097
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	8 cut(s)	165, 224, 534, 557, 786, 960, 1286, 1299
BstDSI	CCRYGG	1 cut(s)	888
BstF5I	GGATG	6 cut(s)	418, 941, 967, 1012, 1069, 1159
BstFNI	CGCG	1 cut(s)	1197
BstHHI	GCGC	2 cut(s)	1174, 1311
BstKTI	GATC	7 cut(s)	259, 342, 461, 732, 818, 880, 1201
BstMBI	GATC	7 cut(s)	256, 339, 458, 729, 815, 877, 1198
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 308, 841, 1097
BstNSI	RCATGY	2 cut(s)	774, 851
BstSCI	CCNGG	2 cut(s)	408, 1223
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	628
BstUI	CGCG	1 cut(s)	1197
BstV1I	GCAGC	4 cut(s)	164, 517, 856, 1075
BstV2I	GAAGAC	1 cut(s)	679
BstX2I	RGATCY	2 cut(s)	729, 877
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	2 cut(s)	729, 877
BsuRI	GGCC	2 cut(s)	385, 1105
BtgI	CCRYGG	1 cut(s)	888
BtsCI	GGATG	6 cut(s)	418, 941, 967, 1012, 1069, 1159
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	2 cut(s)	1174, 1311
Cfr10I	RCCGGY	2 cut(s)	325, 996
Cfr13I	GGNCC	2 cut(s)	764, 994
Csp6I	GTAC	2 cut(s)	543, 899
CspAI	ACCGGT	2 cut(s)	325, 996
CviAII	CATG	9 cut(s)	137, 449, 616, 643, 771, 777, 848, 889, 1216
CviQI	GTAC	2 cut(s)	543, 899
DdeI	CTNAG	8 cut(s)	165, 224, 534, 557, 786, 960, 1286, 1299
DpnI	GATC	7 cut(s)	258, 341, 460, 731, 817, 879, 1200
DpnII	GATC	7 cut(s)	256, 339, 458, 729, 815, 877, 1198
DraI	TTTAAA	1 cut(s)	928
DraIII	CACNNNGTG	1 cut(s)	691
Eam1104I	CTCTTC	3 cut(s)	741, 804, 855
EarI	CTCTTC	3 cut(s)	741, 804, 855
Eco130I	CCWWGG	1 cut(s)	888
Eco147I	AGGCCT	1 cut(s)	1105
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	764, 994
Eco57I	CTGAAG	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	888
EcoT22I	ATGCAT	2 cut(s)	138, 1138
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	888
FaeI	CATG	9 cut(s)	140, 452, 619, 646, 774, 780, 851, 892, 1219
FalI	AAGNNNNNCTT	2 cut(s)	1142, 1174
FaqI	GGGAC	4 cut(s)	110, 777, 806, 1134
FatI	CATG	9 cut(s)	136, 448, 615, 642, 770, 776, 847, 888, 1215
FauI	CCCGC	1 cut(s)	729
FauNDI	CATATG	1 cut(s)	1203
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	5 cut(s)	153, 531, 845, 1089, 1195
FokI	GGATG	6 cut(s)	425, 948, 954, 1019, 1056, 1166
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	5 cut(s)	153, 531, 845, 1089, 1195
FspBI	CTAG	1 cut(s)	431
FspI	TGCGCA	2 cut(s)	1173, 1310
GlaI	GCGC	2 cut(s)	1173, 1310
GluI	GCNGC	5 cut(s)	153, 531, 845, 1089, 1195
HaeIII	GGCC	2 cut(s)	385, 1105
HapII	CCGG	4 cut(s)	326, 409, 997, 1225
HhaI	GCGC	2 cut(s)	1174, 1311
Hin1II	CATG	9 cut(s)	140, 452, 619, 646, 774, 780, 851, 892, 1219
Hin6I	GCGC	2 cut(s)	1172, 1309
HinP1I	GCGC	2 cut(s)	1172, 1309
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	3 cut(s)	200, 314, 794
HpaII	CCGG	4 cut(s)	326, 409, 997, 1225
HphI	GGTGA	6 cut(s)	104, 112, 251, 398, 648, 877
Hpy166II	GTNNAC	1 cut(s)	899
Hpy188I	TCNGA	3 cut(s)	69, 808, 1289
Hpy188III	TCNNGA	2 cut(s)	971, 1082
Hpy8I	GTNNAC	1 cut(s)	899
HpyAV	CCTTC	4 cut(s)	382, 813, 997, 1144
HpyCH4III	ACNGT	8 cut(s)	92, 439, 484, 510, 634, 1042, 1057, 1231
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	8 cut(s)	136, 152, 191, 501, 844, 1091, 1100, 1136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 308, 841, 1097
HpyF3I	CTNAG	8 cut(s)	165, 224, 534, 557, 786, 960, 1286, 1299
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	9 cut(s)	140, 452, 619, 646, 774, 780, 851, 892, 1219
HspAI	GCGC	2 cut(s)	1172, 1309
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	7 cut(s)	256, 339, 458, 729, 815, 877, 1198
LmnI	GCTCC	3 cut(s)	160, 284, 716
Lsp1109I	GCAGC	4 cut(s)	164, 517, 856, 1075
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	5 cut(s)	404, 565, 607, 665, 883
MalI	GATC	7 cut(s)	258, 341, 460, 731, 817, 879, 1200
MboI	GATC	7 cut(s)	256, 339, 458, 729, 815, 877, 1198
MboII	GAAGA	5 cut(s)	212, 684, 758, 791, 872
MfeI	CAATTG	1 cut(s)	1092
MflI	RGATCY	2 cut(s)	729, 877
MhlI	GDGCHC	3 cut(s)	31, 289, 628
MlyI	GAGTC	1 cut(s)	788
MnlI	CCTC	7 cut(s)	59, 376, 524, 614, 693, 1078, 1218
Mph1103I	ATGCAT	2 cut(s)	138, 1138
MseI	TTAA	4 cut(s)	651, 825, 927, 990
MslI	CAYNNNNRTG	4 cut(s)	93, 411, 501, 775
MspI	CCGG	4 cut(s)	326, 409, 997, 1225
MspR9I	CCNGG	2 cut(s)	410, 1225
MunI	CAATTG	1 cut(s)	1092
Mva1269I	GAATGC	1 cut(s)	1174
MvnI	CGCG	1 cut(s)	1197
MwoI	GCNNNNNNNGC	4 cut(s)	161, 308, 841, 1097
NciI	CCSGG	2 cut(s)	410, 1225
NcoI	CCATGG	1 cut(s)	888
NdeI	CATATG	1 cut(s)	1203
NdeII	GATC	7 cut(s)	256, 339, 458, 729, 815, 877, 1198
NlaIII	CATG	9 cut(s)	140, 452, 619, 646, 774, 780, 851, 892, 1219
NlaIV	GGNNCC	6 cut(s)	117, 512, 627, 712, 765, 1221
NmeAIII	GCCGAG	1 cut(s)	811
NmuCI	GTSAC	4 cut(s)	404, 565, 665, 883
NsbI	TGCGCA	2 cut(s)	1173, 1310
NsiI	ATGCAT	2 cut(s)	138, 1138
NspI	RCATGY	2 cut(s)	774, 851
PceI	AGGCCT	1 cut(s)	1105
PctI	GAATGC	1 cut(s)	1174
PfeI	GAWTC	2 cut(s)	200, 314
PinAI	ACCGGT	2 cut(s)	325, 996
PkrI	GCNGC	5 cut(s)	154, 532, 846, 1090, 1196
PleI	GAGTC	1 cut(s)	788
PpsI	GAGTC	1 cut(s)	788
PpuMI	RGGWCCY	1 cut(s)	764
Psp1406I	AACGTT	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	764
PspN4I	GGNNCC	6 cut(s)	117, 512, 627, 712, 765, 1221
PspPI	GGNCC	2 cut(s)	764, 994
PspPPI	RGGWCCY	1 cut(s)	764
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	2 cut(s)	729, 877
RsaI	GTAC	2 cut(s)	544, 900
RsaNI	GTAC	2 cut(s)	543, 899
RseI	CAYNNNNRTG	4 cut(s)	93, 411, 501, 775
SaqAI	TTAA	4 cut(s)	651, 825, 927, 990
SatI	GCNGC	5 cut(s)	153, 531, 845, 1089, 1195
Sau3AI	GATC	7 cut(s)	256, 339, 458, 729, 815, 877, 1198
Sau96I	GGNCC	2 cut(s)	764, 994
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	2 cut(s)	410, 1225
SduI	GDGCHC	3 cut(s)	31, 289, 628
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	764, 994
SmiMI	CAYNNNNRTG	4 cut(s)	93, 411, 501, 775
SmlI	CTYRAG	1 cut(s)	1082
SmoI	CTYRAG	1 cut(s)	1082
SseBI	AGGCCT	1 cut(s)	1105
SsiI	CCGC	3 cut(s)	722, 902, 1195
SspMI	CTAG	1 cut(s)	431
StuI	AGGCCT	1 cut(s)	1105
StyD4I	CCNGG	2 cut(s)	408, 1223
StyI	CCWWGG	1 cut(s)	888
TaaI	ACNGT	8 cut(s)	92, 439, 484, 510, 634, 1042, 1057, 1231
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	3 cut(s)	255, 818, 1239
TaqII	GACCGA	1 cut(s)	684
TauI	GCSGC	1 cut(s)	1197
TfiI	GAWTC	2 cut(s)	200, 314
Tru1I	TTAA	4 cut(s)	651, 825, 927, 990
Tru9I	TTAA	4 cut(s)	651, 825, 927, 990
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	4 cut(s)	404, 565, 665, 883
TseI	GCWGC	4 cut(s)	152, 530, 844, 1088
Tsp45I	GTSAC	4 cut(s)	404, 565, 665, 883
TspDTI	ATGAA	3 cut(s)	153, 437, 485
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	764, 994
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	2 cut(s)	774, 851
XspI	CTAG	1 cut(s)	431
Zsp2I	ATGCAT	2 cut(s)	138, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.