Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003567.1

Orthogroup ID

OG0001719

Physical Location & Seq

Genomic Coordinates Forward (+)

77746 .. 78746

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003567.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgaatgaaggagctgtatatctttggactctacccatgttccattgcaatggttggtgttacacttgggcacttgcagctctttgtgggacaaacatatgccttcgacaggttacagccaaggcagtctattcagcaatacacaagtatgctgtgactcacttttgtgctgcacccgtggtgctcaacaccattgtcaatgctccagaagacgataccatccttcctctcccacatgttgtacacgtaatgacagctggtgctgctcctccaccttctgttctctttgcaatgtcccaaagggggttcaaagccctaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005975 GO:0006081 GO:0006082 GO:0006083 GO:0006097 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019605 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046459 GO:0046487 GO:0047760 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

107

Amino Acids

11.61

Weight (kDa)

7.69

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17650
fragaria_vesca	FvH4_1g10560
malus_domestica	MD15G1233600.v1.1
prunus_persica	Prupe.7G179300_v2.0.a1
pyrus_communis	pycom15g20820
rosa_chinensis	RchiOBHm_Chr2g0097611 RchiOBHm_Chr2g0146681 RchiOBHm_Chr3g0449261 RchiOBHm_Chr3g0449271 RchiOBHm_Chr6g0268031
rosa_laevigata	RLG00000013936 RLG00000016728 RLG00000016729 RLG00000020214 RLG00000025843
rosa_multiflora	Rmu_sc0001839.1_g000028 Rmu_sc0001986.1_g000041 Rmu_sc0003567.1_g000017 Rmu_sc0004220.1_g000001 Rmu_sc0004874.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099970 Rroxscaffold_2G00144660 Rroxscaffold_7G00200080
rosa_rugosa	Rorug02G0067800 Rorug02G0067900 Rorug02G0396000 Rorug02G0619100 Rorug02G0619300 Rorug06G0039100
rosa_samantha	Rh2AG114200 Rh2AG452500 Rh2BG116900 Rh2CG118900 Rh2CG439400 Rh2DG117900 Rh2DG474200 Rh3AG017300 Rh3BG017400 Rh3CG016400 Rh3DG017700 Rh6AG158400 Rh6BG162400 Rh6CG156000
rosa_wichuraiana	Rw0G015740 Rw2G008930 Rw2G036950 Rw3G001320 Rw6G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	109, 303
AflIII	ACRYGT	2 cut(s)	235, 244
AgsI	TTSAA	1 cut(s)	310
AleI	CACNNNNGTG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	14, 80, 257
AluI	AGCT	3 cut(s)	14, 80, 257
Alw21I	GWGCWC	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	77, 170, 263
BaeGI	GKGCMC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	89, 157, 250
BccI	CCATC	1 cut(s)	227
BisI	GCNGC	3 cut(s)	78, 171, 264
BlsI	GCNGC	3 cut(s)	79, 172, 265
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	120, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 303
Bse3DI	GCAATG	3 cut(s)	43, 55, 297
BseDI	CCNNGG	2 cut(s)	120, 177
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	109, 303
BseMI	GCAATG	3 cut(s)	43, 55, 297
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	89, 157, 250
BsgI	GTGCAG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	186
BslFI	GGGAC	2 cut(s)	103, 280
BslI	CCNNNNNNNGG	2 cut(s)	109, 303
BsmFI	GGGAC	2 cut(s)	103, 280
Bsp1286I	GDGCHC	2 cut(s)	73, 186
Bsp1407I	TGTACA	1 cut(s)	241
BsrDI	GCAATG	3 cut(s)	43, 55, 297
BsrGI	TGTACA	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	120, 177
BssT1I	CCWWGG	1 cut(s)	120
BstAUI	TGTACA	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	247
BstDSI	CCRYGG	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 263
BstNSI	RCATGY	1 cut(s)	239
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	3 cut(s)	89, 157, 250
BstV2I	GAAGAC	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	2 cut(s)	37, 236
CviJI	RGCY	5 cut(s)	14, 80, 119, 257, 314
CviKI_1	RGCY	5 cut(s)	14, 80, 119, 257, 314
CviQI	GTAC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	40, 239
FaiI	YATR	6 cut(s)	19, 38, 98, 100, 150, 237
FaqI	GGGAC	2 cut(s)	103, 280
FatI	CATG	2 cut(s)	36, 235
FauNDI	CATATG	1 cut(s)	98
Fnu4HI	GCNGC	3 cut(s)	78, 171, 264
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	3 cut(s)	78, 171, 264
GluI	GCNGC	3 cut(s)	78, 171, 264
GsuI	CTGGAG	1 cut(s)	189
Hin1II	CATG	2 cut(s)	40, 239
HinfI	GANTC	2 cut(s)	28, 157
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	113, 233, 285
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	48, 77, 173, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 263
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	40, 239
LmnI	GCTCC	3 cut(s)	11, 208, 271
LpnPI	CCDG	3 cut(s)	95, 219, 243
Lsp1109I	GCAGC	3 cut(s)	89, 157, 250
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	59, 112, 154
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	73, 186
MlyI	GAGTC	2 cut(s)	22, 151
MnlI	CCTC	2 cut(s)	237, 279
MslI	CAYNNNNRTG	3 cut(s)	48, 147, 165
MspA1I	CMGCKG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	77, 263
NdeI	CATATG	1 cut(s)	98
NlaIII	CATG	2 cut(s)	40, 239
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	239
OliI	CACNNNNGTG	1 cut(s)	165
PciI	ACATGT	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	79, 172, 265
PleI	GAGTC	2 cut(s)	22, 151
PpsI	GAGTC	2 cut(s)	22, 151
Ppu21I	YACGTR	1 cut(s)	247
PscI	ACATGT	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	3 cut(s)	48, 147, 165
SatI	GCNGC	3 cut(s)	78, 171, 264
SchI	GAGTC	2 cut(s)	22, 151
SduI	GDGCHC	2 cut(s)	73, 186
SetI	ASST	6 cut(s)	16, 82, 114, 249, 259, 277
SmiMI	CAYNNNNRTG	3 cut(s)	48, 147, 165
StyI	CCWWGG	1 cut(s)	120
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	106
TatI	WGTACW	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	77, 170, 263
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	17, 21
XagI	CCTNNNNNAGG	1 cut(s)	107
XceI	RCATGY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.