Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004220.1

Orthogroup ID

OG0001719

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1114

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004220.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 928 bp

atgatttctctcagtctctgtaaatcccggtcatctctcctctgtctgtcctggctatgcaccaattgctcaagaactcatggactcgcctcgtttgcactcagtcctcgctctaacttcatcactctcactcattgttaccgtggatactgctcttactcttctgggattaatagtaacaactctgagcttgaagagttatggagttcagaggagggtttagttcggtgctccggaaatcacgcccctttatctccaataggattcttggagcgagctgcaaaggcctacagggacagaacctctgtaatctatggctctctgaaatacacttgggctcaaacccatcaacgctgccttaaattagcttccgctctcactcggttgggaatttctcgcggtgatgtggtgagtgctccaatggctggggcaattctttgtacactaaatgctcggcttgattcagctatgatatctgttcttctttgtcattctgaagctaaaatcgtctttgtcgatcaccaattacttggaattgttgatggagcacttgaattaattgccgaaaaagctgtttcaaaaccgcctattgtagttttaattgctgattctgatgggtcatcatctccaaacagctctacttcagaaactgaaccaccttatgagtatgaaagtcttttagaaagtggaaatagtggatttgagattaggagaccaaaaagtgaatgggatcctatcagtgtaaattacacctctggcacaacatcaaggccgaaaggggttgtctataatcaccgcggcgcttatctcaattcactggccacagttttgctttgcggaataggctcaatgccggttaatctatggactgcgcctgtgtttcattgccatggatggtctctcatttggggtttgcctgctcagggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

309

Amino Acids

33.48

Weight (kDa)

7.54

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17650
fragaria_vesca	FvH4_1g10560
malus_domestica	MD15G1233600.v1.1
prunus_persica	Prupe.7G179300_v2.0.a1
pyrus_communis	pycom15g20820
rosa_chinensis	RchiOBHm_Chr2g0097611 RchiOBHm_Chr2g0146681 RchiOBHm_Chr3g0449261 RchiOBHm_Chr3g0449271 RchiOBHm_Chr6g0268031
rosa_laevigata	RLG00000013936 RLG00000016728 RLG00000016729 RLG00000020214 RLG00000025843
rosa_multiflora	Rmu_sc0001839.1_g000028 Rmu_sc0001986.1_g000041 Rmu_sc0003567.1_g000017 Rmu_sc0004220.1_g000001 Rmu_sc0004874.1_g000003
rosa_roxburghii	Rroxscaffold_2G00099970 Rroxscaffold_2G00144660 Rroxscaffold_7G00200080
rosa_rugosa	Rorug02G0067800 Rorug02G0067900 Rorug02G0396000 Rorug02G0619100 Rorug02G0619300 Rorug06G0039100
rosa_samantha	Rh2AG114200 Rh2AG452500 Rh2BG116900 Rh2CG118900 Rh2CG439400 Rh2DG117900 Rh2DG474200 Rh3AG017300 Rh3BG017400 Rh3CG016400 Rh3DG017700 Rh6AG158400 Rh6BG162400 Rh6CG156000
rosa_wichuraiana	Rw0G015740 Rw2G008930 Rw2G036950 Rw3G001320 Rw6G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	374
AccII	CGCG	2 cut(s)	399, 798
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	6 cut(s)	372, 399, 584, 796, 798, 837
AclWI	GGATC	2 cut(s)	725, 738
AcoI	YGGCCR	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	2 cut(s)	516, 627
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	2 cut(s)	425, 923
AgsI	TTSAA	3 cut(s)	194, 554, 579
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	7 cut(s)	190, 278, 368, 467, 500, 572, 636
AluI	AGCT	7 cut(s)	190, 278, 368, 467, 500, 572, 636
Alw21I	GWGCWC	3 cut(s)	233, 418, 550
Alw26I	GTCTC	3 cut(s)	20, 706, 903
AlwI	GGATC	2 cut(s)	725, 738
AlwNI	CAGNNNCTG	2 cut(s)	18, 650
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	3 cut(s)	285, 770, 819
ApeKI	GCWGC	2 cut(s)	278, 354
ApoI	RAATTY	1 cut(s)	390
AseI	ATTAAT	2 cut(s)	171, 557
AspLEI	GCGC	2 cut(s)	803, 874
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	4 cut(s)	413, 421, 512, 785
BalI	TGGCCA	1 cut(s)	821
BamHI	GGATCC	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	3 cut(s)	233, 418, 550
BbvI	GCAGC	2 cut(s)	265, 341
BccI	CCATC	4 cut(s)	354, 536, 608, 888
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	20, 706, 903
BfmI	CTRYAG	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	804
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	279, 355, 799
BlsI	GCNGC	3 cut(s)	280, 356, 800
Bme1390I	CCNGG	2 cut(s)	28, 52
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	2 cut(s)	28, 52
Bpu10I	CCTNAGC	1 cut(s)	921
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	28
BsaI	GGTCTC	2 cut(s)	706, 903
BsaJI	CCNNGG	3 cut(s)	142, 796, 889
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 923
Bse118I	RCCGGY	1 cut(s)	853
Bse1I	ACTGG	1 cut(s)	822
Bse3DI	GCAATG	1 cut(s)	883
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	3 cut(s)	142, 796, 889
BseGI	GGATG	1 cut(s)	899
BseLI	CCNNNNNNNGG	2 cut(s)	425, 923
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	3 cut(s)	25, 115, 177
BseNI	ACTGG	1 cut(s)	822
BseRI	GAGGAG	2 cut(s)	29, 227
BseXI	GCAGC	2 cut(s)	265, 341
BseYI	CCCAGC	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	399, 798
BshFI	GGCC	3 cut(s)	287, 772, 821
BsiHKAI	GWGCWC	3 cut(s)	233, 418, 550
BsiSI	CCGG	3 cut(s)	28, 234, 854
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	425, 923
BsmAI	GTCTC	3 cut(s)	20, 706, 903
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	287, 772, 821
Bso31I	GGTCTC	2 cut(s)	706, 903
Bsp1286I	GDGCHC	4 cut(s)	233, 340, 418, 550
Bsp13I	TCCGGA	1 cut(s)	233
Bsp1407I	TGTACA	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	517, 730
Bsp19I	CCATGG	1 cut(s)	889
BspACI	CCGC	6 cut(s)	372, 399, 584, 796, 798, 837
BspANI	GGCC	3 cut(s)	287, 772, 821
BspCNI	CTCAG	3 cut(s)	24, 114, 178
BspEI	TCCGGA	1 cut(s)	233
BspFNI	CGCG	2 cut(s)	399, 798
BspLI	GGNNCC	1 cut(s)	732
BspPI	GGATC	2 cut(s)	725, 738
BspTNI	GGTCTC	2 cut(s)	706, 903
BsrBI	CCGCTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	853
BsrGI	TGTACA	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	822
BssAI	RCCGGY	1 cut(s)	853
BssECI	CCNNGG	3 cut(s)	142, 796, 889
BssMI	GATC	2 cut(s)	517, 730
BssT1I	CCWWGG	1 cut(s)	889
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	143, 826
Bst6I	CTCTTC	2 cut(s)	166, 189
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstAUI	TGTACA	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	276, 918
BstDEI	CTNAG	4 cut(s)	11, 101, 186, 921
BstDSI	CCRYGG	3 cut(s)	142, 796, 889
BstF5I	GGATG	1 cut(s)	899
BstFNI	CGCG	2 cut(s)	399, 798
BstH2I	RGCGCY	1 cut(s)	804
BstHHI	GCGC	2 cut(s)	803, 874
BstKTI	GATC	2 cut(s)	520, 733
BstMAI	GTCTC	3 cut(s)	20, 706, 903
BstMBI	GATC	2 cut(s)	517, 730
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 95, 284, 422, 569, 843
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	26, 50
BstSFI	CTRYAG	1 cut(s)	289
BstUI	CGCG	2 cut(s)	399, 798
BstV1I	GCAGC	2 cut(s)	265, 341
BstX2I	RGATCY	1 cut(s)	730
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	730
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	3 cut(s)	287, 772, 821
BtgI	CCRYGG	3 cut(s)	142, 796, 889
BtsCI	GGATG	1 cut(s)	899
BtsIMutI	CAGTG	2 cut(s)	745, 815
Cac8I	GCNNGC	2 cut(s)	276, 918
CaiI	CAGNNNCTG	2 cut(s)	18, 650
CfoI	GCGC	2 cut(s)	803, 874
Cfr10I	RCCGGY	1 cut(s)	853
Cfr42I	CCGCGG	1 cut(s)	799
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	2 cut(s)	80, 890
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	4 cut(s)	11, 101, 186, 921
DpnI	GATC	2 cut(s)	519, 732
DpnII	GATC	2 cut(s)	517, 730
EaeI	YGGCCR	1 cut(s)	819
Eam1104I	CTCTTC	2 cut(s)	166, 189
EarI	CTCTTC	2 cut(s)	166, 189
Eco130I	CCWWGG	1 cut(s)	889
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	2 cut(s)	706, 903
Eco32I	GATATC	1 cut(s)	474
Eco57I	CTGAAG	2 cut(s)	516, 627
EcoRII	CCWGG	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	889
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	889
FaeI	CATG	2 cut(s)	83, 893
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	79, 889
Fnu4HI	GCNGC	3 cut(s)	279, 355, 799
FokI	GGATG	1 cut(s)	906
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	3 cut(s)	279, 355, 799
GlaI	GCGC	2 cut(s)	802, 873
GluI	GCNGC	3 cut(s)	279, 355, 799
GsaI	CCCAGC	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	804
HaeIII	GGCC	3 cut(s)	287, 772, 821
HapII	CCGG	3 cut(s)	28, 234, 854
HhaI	GCGC	2 cut(s)	803, 874
Hin1II	CATG	2 cut(s)	83, 893
Hin6I	GCGC	2 cut(s)	801, 872
HinP1I	GCGC	2 cut(s)	801, 872
HinfI	GANTC	4 cut(s)	84, 264, 461, 608
HpaII	CCGG	3 cut(s)	28, 234, 854
HphI	GGTGA	4 cut(s)	413, 421, 512, 785
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	6 cut(s)	187, 211, 324, 496, 613, 646
Hpy188III	TCNNGA	2 cut(s)	72, 234
Hpy8I	GTNNAC	1 cut(s)	443
HpyCH4III	ACNGT	2 cut(s)	143, 826
HpyCH4V	TGCA	3 cut(s)	60, 98, 281
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 95, 284, 422, 569, 843
HpyF3I	CTNAG	4 cut(s)	11, 101, 186, 921
Hsp92II	CATG	2 cut(s)	83, 893
HspAI	GCGC	2 cut(s)	801, 872
Kpn2I	TCCGGA	1 cut(s)	233
KspI	CCGCGG	1 cut(s)	799
Kzo9I	GATC	2 cut(s)	517, 730
LmnI	GCTCC	4 cut(s)	236, 271, 421, 545
Lsp1109I	GCAGC	2 cut(s)	265, 341
MaeIII	GTNAC	2 cut(s)	137, 176
MalI	GATC	2 cut(s)	519, 732
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	2 cut(s)	517, 730
MboII	GAAGA	3 cut(s)	153, 206, 473
MfeI	CAATTG	1 cut(s)	64
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	4 cut(s)	233, 340, 418, 550
MlsI	TGGCCA	1 cut(s)	821
MluNI	TGGCCA	1 cut(s)	821
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	50, 100, 117, 205, 208, 313, 763
Mox20I	TGGCCA	1 cut(s)	821
MroI	TCCGGA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	821
MseI	TTAA	5 cut(s)	171, 360, 557, 599, 858
MslI	CAYNNNNRTG	1 cut(s)	888
Msp20I	TGGCCA	1 cut(s)	821
MspA1I	CMGCKG	1 cut(s)	798
MspI	CCGG	3 cut(s)	28, 234, 854
MspR9I	CCNGG	2 cut(s)	28, 52
MunI	CAATTG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	2 cut(s)	399, 798
MwoI	GCNNNNNNNGC	6 cut(s)	66, 95, 284, 422, 569, 843
NciI	CCSGG	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	889
NdeII	GATC	2 cut(s)	517, 730
NlaIII	CATG	2 cut(s)	83, 893
NlaIV	GGNNCC	1 cut(s)	732
NmeAIII	GCCGAG	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	264, 461, 608
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	280, 356, 800
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PshBI	ATTAAT	2 cut(s)	171, 557
Psp6I	CCWGG	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	732
PstNI	CAGNNNCTG	2 cut(s)	18, 650
PsuI	RGATCY	1 cut(s)	730
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	888
SacII	CCGCGG	1 cut(s)	799
SaqAI	TTAA	5 cut(s)	171, 360, 557, 599, 858
SatI	GCNGC	3 cut(s)	279, 355, 799
Sau3AI	GATC	2 cut(s)	517, 730
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	28, 52
SduI	GDGCHC	4 cut(s)	233, 340, 418, 550
SfcI	CTRYAG	1 cut(s)	289
Sfr303I	CCGCGG	1 cut(s)	799
SgrBI	CCGCGG	1 cut(s)	799
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	6 cut(s)	372, 399, 584, 796, 798, 837
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	26, 50
StyI	CCWWGG	1 cut(s)	889
TaaI	ACNGT	2 cut(s)	143, 826
TaqI	TCGA	1 cut(s)	516
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	1 cut(s)	801
TfiI	GAWTC	3 cut(s)	264, 461, 608
Tru1I	TTAA	5 cut(s)	171, 360, 557, 599, 858
Tru9I	TTAA	5 cut(s)	171, 360, 557, 599, 858
TscAI	CASTG	2 cut(s)	745, 822
TseI	GCWGC	2 cut(s)	278, 354
TspDTI	ATGAA	3 cut(s)	109, 684, 872
TspRI	CASTG	2 cut(s)	745, 822
Van91I	CCANNNNNTGG	1 cut(s)	425
VspI	ATTAAT	2 cut(s)	171, 557
XapI	RAATTY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.