Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005515

Physical Location & Seq

Genomic Coordinates Reverse (-)

11484379 .. 11486275

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016947

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTGATTTATCATCAAGTGTAGCTGATAAGAGAAGATTTTGTATGGTGCCTGAAAATGCAAGGATTCACATGGCTTCAACTGTCCTGCAAACTATGCTTAATATGAGTGTAAGCATGCTTGTTTTCTCAGTTTACAGGAATGTCACCGCGCTGCTTCTGCTGATTCCATTTGCATACTTTTTGGAGAAGAAAGATAGACCACCACTGAATATTTCCCTTGTCATGCAGTTTTTTCTCCTAGGACTTCTTGGGGTTACATGCAATCAAGGCTTGTATCTCTTTGGTTTAAAGAACACCTCCCCCACATTTGTTTCGACAATAGAGAATGCAGTCCCTGCAATAACATTTCTCATAGCTGCCTTATTCAGAATTGAACAAATGCACTTGAATAGAAAATATGGTAAAGCCAAAGTGCTTGGAACTCTTGCTTCTGTTGCTGGAGCCTCAGTCATAACCTTTTACAAGGGGCCAACTATTTATGTTCCTCCAACACCTTTAAGCCAATCCCATATGCTCTACTCATTATTTGGAGATGTCAAGGAGGAGAATTGGACCTTTGGTTGCATCTGTGTAATAGGTCATTGCCTATGTTGGTCTACCTGGATTGTGCTACAAGCACCTGTTCTGAAGAAGTATCCAGCTCGCCTTTCAGTTGCCTCATTTACTCTCTTCTTTGGCATTTTGCAACTTTTTGCAATCGCGGTGTGTGTAGAGAGAGATTTCCAAGCCTGGCGGTTCCCTTACGGCAGTGAAGTCTTTGCCATTCTCTACATGGGAGTGGGGGCTTCAGCAATGGCGAATGTAATACAGATATGGGTGATTGACAAGGGAGGACCAGTGCATGTTTCATTGTATCTGCCTTTACAGACGGCAGTTGTCGCTGTAATGGACTCGCTCGTTTTTGGTGAAGAATTCTACTTGGGAAGCATTATTGGAGCAATGATGACCATAGCAGGGCTGTACCTGGTGGTCTGGGGAAAAAGGCAGGAGAGCAAAATCAAGGTGGAAACTTCCTCAATGCCAGGGAACATTGATAGTCTGATAAACTATTGTTCCGGGGGAGAAGAACCCTCTCTTGTTCAAGCATTGCTCCCTACCTCTGCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

371

Amino Acids

40.79

Weight (kDa)

8.54

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	27 - 153	1.2e-14	EamA-like transporter family
EamA	PF00892	187 - 325	1.6e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12390 FvH4_1g12390
rosa_chinensis	RchiOBHm_Chr2g0100221 RchiOBHm_Chr2g0100231 RchiOBHm_Chr2g0100241
rosa_laevigata	RLG00000016947 RLG00000016948 RLG00000016949
rosa_multiflora	Rmu_sc0002547.1_g000006 Rmu_sc0002547.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142450 Rroxscaffold_2G00142460 Rroxscaffold_2G00142470
rosa_rugosa	Rorug02G0086600 Rorug02G0086700
rosa_samantha	Rh2AG135600 Rh2AG135700 Rh2BG139000 Rh2BG139100 Rh2BG139200 Rh2CG140800 Rh2CG140900 Rh2CG141000 Rh2DG141000 Rh2DG141100 Rh2DG141200
rosa_wichuraiana	Rw2G010590 Rw2G010600 Rw2G010610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	599
AccII	CGCG	2 cut(s)	152, 704
AciI	CCGC	3 cut(s)	150, 704, 736
AcsI	RAATTY	1 cut(s)	914
AcuI	CTGAAG	2 cut(s)	650, 774
AfaI	GTAC	1 cut(s)	965
AfiI	CCNNNNNNNGG	1 cut(s)	957
AgsI	TTSAA	4 cut(s)	81, 377, 391, 1085
AjnI	CCWGG	4 cut(s)	602, 731, 966, 1024
AluBI	AGCT	3 cut(s)	26, 359, 644
AluI	AGCT	3 cut(s)	26, 359, 644
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	154, 359
ApoI	RAATTY	1 cut(s)	914
AspA2I	CCTAGG	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	3 cut(s)	470, 555, 836
AsuC2I	CCSGG	1 cut(s)	1060
AsuHPI	GGTGA	3 cut(s)	139, 832, 920
AvaII	GGWCC	2 cut(s)	555, 836
AvrII	CCTAGG	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	141, 346
BceAI	ACGGC	2 cut(s)	763, 888
BciT130I	CCWGG	4 cut(s)	604, 733, 968, 1026
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	1 cut(s)	1060
BfaI	CTAG	2 cut(s)	242, 1111
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	2 cut(s)	155, 360
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	2 cut(s)	156, 361
Bme1390I	CCNGG	5 cut(s)	604, 733, 968, 1026, 1060
Bme18I	GGWCC	2 cut(s)	555, 836
BmgT120I	GGNCC	3 cut(s)	470, 555, 836
BmiI	GGNNCC	4 cut(s)	51, 445, 471, 740
BmrFI	CCNGG	5 cut(s)	604, 733, 968, 1026, 1060
BmsI	GCATC	1 cut(s)	576
BpmI	CTGGAG	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	1060
BsaJI	CCNNGG	3 cut(s)	241, 1025, 1059
BsaXI	ACNNNNNCTCC	4 cut(s)	435, 465, 825, 855
Bsc4I	CCNNNNNNNGG	1 cut(s)	957
Bse1I	ACTGG	1 cut(s)	839
Bse3DI	GCAATG	4 cut(s)	583, 801, 948, 1088
BseBI	CCWGG	4 cut(s)	604, 733, 968, 1026
BseDI	CCNNGG	3 cut(s)	241, 1025, 1059
BseLI	CCNNNNNNNGG	1 cut(s)	957
BseMI	GCAATG	4 cut(s)	583, 801, 948, 1088
BseMII	CTCAG	2 cut(s)	144, 462
BseNI	ACTGG	1 cut(s)	839
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	141, 346
Bsh1236I	CGCG	2 cut(s)	152, 704
BshFI	GGCC	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	1059
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	957
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	472
BspACI	CCGC	3 cut(s)	150, 704, 736
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	2 cut(s)	143, 461
BspFNI	CGCG	2 cut(s)	152, 704
BspLI	GGNNCC	4 cut(s)	51, 445, 471, 740
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	4 cut(s)	583, 801, 948, 1088
BsrI	ACTGG	1 cut(s)	839
BssECI	CCNNGG	3 cut(s)	241, 1025, 1059
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	4 cut(s)	604, 733, 968, 1026
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	677
BstAPI	GCANNNNNTGC	2 cut(s)	97, 338
BstC8I	GCNNGC	2 cut(s)	119, 646
BstDEI	CTNAG	2 cut(s)	130, 448
BstFNI	CGCG	2 cut(s)	152, 704
BstHHI	GCGC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 160, 270, 338, 437, 881
BstNI	CCWGG	4 cut(s)	604, 733, 968, 1026
BstNSI	RCATGY	3 cut(s)	121, 264, 848
BstSCI	CCNGG	5 cut(s)	602, 731, 966, 1024, 1058
BstUI	CGCG	2 cut(s)	152, 704
BstV1I	GCAGC	2 cut(s)	141, 346
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	757
BtsIMutI	CAGTG	3 cut(s)	206, 757, 846
Cac8I	GCNNGC	2 cut(s)	119, 646
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	470, 555, 836
CsiI	ACCWGGT	1 cut(s)	966
Csp6I	GTAC	1 cut(s)	964
CviAII	CATG	6 cut(s)	73, 118, 226, 261, 775, 845
CviQI	GTAC	1 cut(s)	964
DdeI	CTNAG	2 cut(s)	130, 448
DraI	TTTAAA	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	555, 836
Eco57I	CTGAAG	2 cut(s)	650, 774
EcoRI	GAATTC	1 cut(s)	914
EcoRII	CCWGG	4 cut(s)	602, 731, 966, 1024
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	6 cut(s)	76, 121, 229, 264, 778, 848
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	6 cut(s)	72, 117, 225, 260, 774, 844
FauNDI	CATATG	1 cut(s)	513
FblI	GTMKAC	1 cut(s)	599
Fnu4HI	GCNGC	2 cut(s)	155, 360
Fsp4HI	GCNGC	2 cut(s)	155, 360
FspBI	CTAG	2 cut(s)	242, 1111
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	155, 360
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	1 cut(s)	1059
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	6 cut(s)	76, 121, 229, 264, 778, 848
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	3 cut(s)	67, 166, 893
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	3 cut(s)	139, 832, 920
Hpy166II	GTNNAC	2 cut(s)	136, 600
Hpy188I	TCNGA	3 cut(s)	371, 630, 1044
Hpy8I	GTNNAC	2 cut(s)	136, 600
HpyCH4III	ACNGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 160, 270, 338, 437, 881
HpyF3I	CTNAG	2 cut(s)	130, 448
Hsp92II	CATG	6 cut(s)	76, 121, 229, 264, 778, 848
HspAI	GCGC	1 cut(s)	152
LmnI	GCTCC	3 cut(s)	443, 938, 1098
Lsp1109I	GCAGC	2 cut(s)	141, 346
LweI	GCATC	1 cut(s)	576
MabI	ACCWGGT	1 cut(s)	966
MaeI	CTAG	2 cut(s)	242, 1111
MaeIII	GTNAC	2 cut(s)	145, 256
MboII	GAAGA	6 cut(s)	48, 202, 643, 664, 923, 1079
MluCI	AATT	3 cut(s)	372, 550, 914
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	1 cut(s)	515
MnlI	CCTC	9 cut(s)	310, 457, 498, 538, 670, 827, 1027, 1084, 1111
MseI	TTAA	3 cut(s)	102, 290, 500
MslI	CAYNNNNRTG	1 cut(s)	779
MspI	CCGG	1 cut(s)	1059
MspR9I	CCNGG	5 cut(s)	604, 733, 968, 1026, 1060
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	4 cut(s)	604, 733, 968, 1026
MvnI	CGCG	2 cut(s)	152, 704
MwoI	GCNNNNNNNGC	6 cut(s)	97, 160, 270, 338, 437, 881
NciI	CCSGG	1 cut(s)	1060
NdeI	CATATG	1 cut(s)	513
NlaIII	CATG	6 cut(s)	76, 121, 229, 264, 778, 848
NlaIV	GGNNCC	4 cut(s)	51, 445, 471, 740
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	3 cut(s)	121, 264, 848
PaeI	GCATGC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	67, 166
PkrI	GCNGC	2 cut(s)	156, 361
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
Psp6I	CCWGG	4 cut(s)	602, 731, 966, 1024
PspGI	CCWGG	4 cut(s)	602, 731, 966, 1024
PspN4I	GGNNCC	4 cut(s)	51, 445, 471, 740
PspPI	GGNCC	3 cut(s)	470, 555, 836
PstNI	CAGNNNCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	965
RsaNI	GTAC	1 cut(s)	964
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	3 cut(s)	102, 290, 500
SatI	GCNGC	2 cut(s)	155, 360
Sau96I	GGNCC	3 cut(s)	470, 555, 836
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	5 cut(s)	604, 733, 968, 1026, 1060
SexAI	ACCWGGT	1 cut(s)	966
SfaNI	GCATC	1 cut(s)	576
SinI	GGWCC	2 cut(s)	555, 836
SmiMI	CAYNNNNRTG	1 cut(s)	779
SphI	GCATGC	1 cut(s)	121
Sse9I	AATT	3 cut(s)	372, 550, 914
SsiI	CCGC	3 cut(s)	150, 704, 736
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	2 cut(s)	242, 1111
StyD4I	CCNGG	5 cut(s)	602, 731, 966, 1024, 1058
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	317
TasI	AATT	3 cut(s)	372, 550, 914
TfiI	GAWTC	2 cut(s)	67, 166
Tru1I	TTAA	3 cut(s)	102, 290, 500
Tru9I	TTAA	3 cut(s)	102, 290, 500
TscAI	CASTG	3 cut(s)	213, 757, 846
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	154, 359
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	840
TspRI	CASTG	3 cut(s)	213, 757, 846
VpaK11BI	GGWCC	2 cut(s)	555, 836
XapI	RAATTY	1 cut(s)	914
XceI	RCATGY	3 cut(s)	121, 264, 848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XmaJI	CCTAGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	599
XspI	CTAG	2 cut(s)	242, 1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.