Rorug02G0086700

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005515
Physical Location & Seq
Reverse (-)
6894933 .. 6897092
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0086700.1

Sequence Viewer

Length: 351 bp
ATGGAAGGAGACACATTTTCTGGGCTAGTTGGCAATGGCACCCAAATTGATGGCAAAGTGTTGCAGACATTTCAGAAGAGCTTTGTTCAAGTCCAGGATATCCTGGACCAGAACAGGTTGCTCATAAATGAGATAAACCAAAACCATGAGTCTAAGATCCCTGACAACCTGAGCAGAAATGTGGGTCTGATCAGAGAGCTCAACGACAATATCAGGAGGGTGGTAGACCTCTATGCTGATCTCTCAAGCTCCTTCACCAAATCCATGGAGACTTCATCTGAGGGAGACTCCAGCGGTGGTGCTTTGAAGTCAGATGGTAAAGCTGGGCACAAGAGGAATAGGCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

116

Amino Acids

12.75

Weight (kDa)

5.62

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 15 - 96 2e-41 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 225
AciI CCGC 1 cut(s) 294
AclWI GGATC 1 cut(s) 151
AgsI TTSAA 2 cut(s) 89, 307
AjnI CCWGG 2 cut(s) 93, 102
AluBI AGCT 4 cut(s) 81, 199, 249, 323
AluI AGCT 4 cut(s) 81, 199, 249, 323
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 3 cut(s) 3, 263, 279
AlwI GGATC 1 cut(s) 151
AoxI GGCC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 201
BccI CCATC 2 cut(s) 44, 308
BciT130I CCWGG 2 cut(s) 95, 104
BclI TGATCA 1 cut(s) 189
BcoDI GTCTC 3 cut(s) 3, 263, 279
BfaI CTAG 1 cut(s) 26
Bme1390I CCNGG 2 cut(s) 95, 104
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 2 cut(s) 95, 104
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 95, 104
BseDI CCNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 161, 270
BseSI GKGCMC 1 cut(s) 330
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 1 cut(s) 343
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 201
BsmAI GTCTC 3 cut(s) 3, 263, 279
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 201, 330
Bsp143I GATC 3 cut(s) 156, 189, 238
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 2 cut(s) 162, 271
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 156, 189, 238
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 95, 104
Bst6I CTCTTC 1 cut(s) 71
BstDEI CTNAG 3 cut(s) 153, 170, 279
BstDSI CCRYGG 1 cut(s) 264
BstKTI GATC 3 cut(s) 159, 192, 241
BstMAI GTCTC 3 cut(s) 3, 263, 279
BstMBI GATC 3 cut(s) 156, 189, 238
BstNI CCWGG 2 cut(s) 95, 104
BstSCI CCNGG 2 cut(s) 93, 102
BstSLI GKGCMC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 156
BstXI CCANNNNNNTGG 2 cut(s) 50, 265
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 1 cut(s) 343
BtgI CCRYGG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 2 cut(s) 146, 265
CviJI RGCY 6 cut(s) 25, 81, 199, 249, 323, 343
CviKI_1 RGCY 6 cut(s) 25, 81, 199, 249, 323, 343
DdeI CTNAG 3 cut(s) 153, 170, 279
DpnI GATC 3 cut(s) 158, 191, 240
DpnII GATC 3 cut(s) 156, 189, 238
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 264
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 201
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 93, 102
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 2 cut(s) 149, 268
FaiI YATR 5 cut(s) 125, 147, 234, 266, 349
FatI CATG 2 cut(s) 145, 264
FbaI TGATCA 1 cut(s) 189
FblI GTMKAC 1 cut(s) 225
FriOI GRGCYC 1 cut(s) 201
FspBI CTAG 1 cut(s) 26
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 1 cut(s) 343
Hin1II CATG 2 cut(s) 149, 268
HinfI GANTC 2 cut(s) 149, 287
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 5 cut(s) 75, 189, 194, 280, 313
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 64
HpyF3I CTNAG 3 cut(s) 153, 170, 279
Hsp92II CATG 2 cut(s) 149, 268
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 3 cut(s) 156, 189, 238
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 254
MaeI CTAG 1 cut(s) 26
MalI GATC 3 cut(s) 158, 191, 240
MboI GATC 3 cut(s) 156, 189, 238
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 2 cut(s) 201, 330
MluCI AATT 1 cut(s) 45
MlyI GAGTC 2 cut(s) 158, 281
MnlI CCTC 4 cut(s) 210, 239, 274, 327
MspA1I CMGCKG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 95, 104
MvaI CCWGG 2 cut(s) 95, 104
NcoI CCATGG 1 cut(s) 264
NdeII GATC 3 cut(s) 156, 189, 238
NlaIII CATG 2 cut(s) 149, 268
NlaIV GGNNCC 1 cut(s) 40
PceI AGGCCT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 71
PfoI TCCNGGA 2 cut(s) 93, 102
PleI GAGTC 2 cut(s) 157, 281
PpsI GAGTC 2 cut(s) 157, 281
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 93, 102
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 2 cut(s) 93, 102
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 156
SacI GAGCTC 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 71
Sau3AI GATC 3 cut(s) 156, 189, 238
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 2 cut(s) 158, 281
ScrFI CCNGG 2 cut(s) 95, 104
SduI GDGCHC 2 cut(s) 201, 330
SetI ASST 7 cut(s) 83, 119, 171, 201, 231, 251, 325
SinI GGWCC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 1 cut(s) 45
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 1 cut(s) 294
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 201
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 2 cut(s) 93, 102
StyI CCWWGG 1 cut(s) 264
TasI AATT 1 cut(s) 45
TspDTI ATGAA 2 cut(s) 264, 336
VpaK11BI GGWCC 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.