Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005515

Physical Location & Seq

Genomic Coordinates Reverse (-)

11886128 .. 11888065

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG139000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTGATTTATCATCAAGTGTAGCTAATAAGAGAAGATTGTGTATGGTGCCTGAAAATGCAAGGATTCATATGGCTTCAACTGTCCTTCAGTTCATCTATGCGGGGAAAGATAGACCACCACTGAATATGTCCCTTGTCATGAAGTTTTTTCTCCTAGGACTTCTTGGGGTGACATGCAATCAAGGCTTGTATCTCTTTGGTTTAAAGAACACCTCCCCCACATTTGTTTCGACAATAGAGAATGCAGTCCCTGCAATAACATTTCTCATGGCTGCCTTATTCAGAATTGAACAAATGCACTTGAATAGAAAATATGGTAAAGCCAAAGTGCTTGGAACTCTTGCTTCTGTTGCTGGAGCCTCAGTCATAACCTTTTACAAGGGGCCAACTATTTATGTTCCTCCAAGTACTTCACCTTTAAGCCAATCCCATATGCTCTACTCATTATTTGGAGATGTCAAGGAGGAGAATTGGACCTTTGGTTACATCTGCGTAATAAGTCATTGCCTATGTTGGTCTACCTGGATTGTGCTACAAGCACCTGTTCTGAAGAACTACCCAGCTCGCCTCTCAGTCACCTCATTTACTCTCTTCTTTGGCATTTTGCAACTTTTAGCAATCGCGGTGTGTGTAGAGAGAGATTCCCAAGCCTGGCAGTTCCATTACGGCAGTCAAGTCTTTGCCATTCTCTACCTGGGAGTGGGGGCTTCAGCAATGGCGAATGTAATACAGATATGGGTGATTGACAAGGGAGGACCAGTGTATGTTTCACTGTATCTGCCTTTACAGACGGCAGTTGTAGCTGTAATGGACTCGCTCGTTTTTGGTGAAGAATTCTACTTGGGAAGCATTATTGGAGCAATGTTGACCATAGCAGGGCTGTACCTGGTGGTCTGGGGAAAAAGGCAAGAGAGCAAAATCAAGGTGGAAACTTCCTCAGTGCCAGGGAACATTAACAGTCTGATAAACTATTGTTCTGGGGGAGAAGAACCCTCTCTTGTTCAAGCATTGCTCCCTACCTCTGCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

344

Amino Acids

37.69

Weight (kDa)

8.74

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 125	2.2e-09	EamA-like transporter family
EamA	PF00892	161 - 299	9.7e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12390 FvH4_1g12390
rosa_chinensis	RchiOBHm_Chr2g0100221 RchiOBHm_Chr2g0100231 RchiOBHm_Chr2g0100241
rosa_laevigata	RLG00000016947 RLG00000016948 RLG00000016949
rosa_multiflora	Rmu_sc0002547.1_g000006 Rmu_sc0002547.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142450 Rroxscaffold_2G00142460 Rroxscaffold_2G00142470
rosa_rugosa	Rorug02G0086600 Rorug02G0086700
rosa_samantha	Rh2AG135600 Rh2AG135700 Rh2BG139000 Rh2BG139100 Rh2BG139200 Rh2CG140800 Rh2CG140900 Rh2CG141000 Rh2DG141000 Rh2DG141100 Rh2DG141200
rosa_wichuraiana	Rw2G010590 Rw2G010600 Rw2G010610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	521
AccII	CGCG	1 cut(s)	626
AciI	CCGC	2 cut(s)	104, 626
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	3 cut(s)	74, 572, 696
AfaI	GTAC	2 cut(s)	412, 887
AfiI	CCNNNNNNNGG	3 cut(s)	654, 703, 879
AgsI	TTSAA	4 cut(s)	81, 293, 307, 1007
AjnI	CCWGG	5 cut(s)	524, 653, 696, 888, 946
AluBI	AGCT	3 cut(s)	26, 566, 806
AluI	AGCT	3 cut(s)	26, 566, 806
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	836
AspA2I	CCTAGG	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	386, 477, 758
AsuHPI	GGTGA	5 cut(s)	184, 408, 571, 754, 842
AvaII	GGWCC	2 cut(s)	477, 758
AvrII	CCTAGG	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	262
BceAI	ACGGC	2 cut(s)	685, 810
BciT130I	CCWGG	5 cut(s)	526, 655, 698, 890, 948
BfaI	CTAG	2 cut(s)	158, 1033
BisI	GCNGC	1 cut(s)	276
BlnI	CCTAGG	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	277
BmcAI	AGTACT	1 cut(s)	412
Bme1390I	CCNGG	5 cut(s)	526, 655, 698, 890, 948
Bme18I	GGWCC	2 cut(s)	477, 758
BmgT120I	GGNCC	3 cut(s)	386, 477, 758
BmiI	GGNNCC	3 cut(s)	51, 361, 387
BmrFI	CCNGG	5 cut(s)	526, 655, 698, 890, 948
BpmI	CTGGAG	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	157, 697, 947
BsaXI	ACNNNNNCTCC	4 cut(s)	351, 381, 747, 777
Bsc4I	CCNNNNNNNGG	3 cut(s)	654, 703, 879
Bse1I	ACTGG	1 cut(s)	761
Bse3DI	GCAATG	4 cut(s)	505, 723, 870, 1010
BseBI	CCWGG	5 cut(s)	526, 655, 698, 890, 948
BseDI	CCNNGG	3 cut(s)	157, 697, 947
BseLI	CCNNNNNNNGG	3 cut(s)	654, 703, 879
BseMI	GCAATG	4 cut(s)	505, 723, 870, 1010
BseMII	CTCAG	3 cut(s)	378, 588, 954
BseNI	ACTGG	1 cut(s)	761
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	562
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	388
BshNI	GGYRCC	1 cut(s)	49
BslFI	GGGAC	2 cut(s)	118, 236
BslI	CCNNNNNNNGG	3 cut(s)	654, 703, 879
BsmFI	GGGAC	2 cut(s)	118, 236
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	388
BspACI	CCGC	2 cut(s)	104, 626
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	3 cut(s)	377, 587, 953
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	51, 361, 387
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	4 cut(s)	505, 723, 870, 1010
BsrI	ACTGG	1 cut(s)	761
BssECI	CCNNGG	3 cut(s)	157, 697, 947
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	5 cut(s)	526, 655, 698, 890, 948
Bst4CI	ACNGT	3 cut(s)	85, 777, 962
Bst6I	CTCTTC	1 cut(s)	599
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	3 cut(s)	364, 574, 940
BstFNI	CGCG	1 cut(s)	626
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 254, 353, 803
BstNI	CCWGG	5 cut(s)	526, 655, 698, 890, 948
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	5 cut(s)	524, 653, 696, 888, 946
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	388
BtsIMutI	CAGTG	4 cut(s)	122, 768, 773, 948
Cac8I	GCNNGC	1 cut(s)	568
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	3 cut(s)	386, 477, 758
CsiI	ACCWGGT	1 cut(s)	888
Csp6I	GTAC	2 cut(s)	411, 886
CviAII	CATG	3 cut(s)	142, 177, 271
CviQI	GTAC	2 cut(s)	411, 886
DdeI	CTNAG	3 cut(s)	364, 574, 940
DraI	TTTAAA	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	477, 758
Eco57I	CTGAAG	3 cut(s)	74, 572, 696
EcoRI	GAATTC	1 cut(s)	836
EcoRII	CCWGG	5 cut(s)	524, 653, 696, 888, 946
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	3 cut(s)	145, 180, 274
FaqI	GGGAC	2 cut(s)	118, 236
FatI	CATG	3 cut(s)	141, 176, 270
FauI	CCCGC	1 cut(s)	97
FauNDI	CATATG	2 cut(s)	72, 435
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	158, 1033
GluI	GCNGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	566
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	388
Hin1II	CATG	3 cut(s)	145, 180, 274
HincII	GTYRAC	1 cut(s)	870
HindII	GTYRAC	1 cut(s)	870
HinfI	GANTC	3 cut(s)	67, 644, 815
HphI	GGTGA	5 cut(s)	184, 408, 571, 754, 842
Hpy166II	GTNNAC	2 cut(s)	522, 870
Hpy188I	TCNGA	3 cut(s)	287, 552, 966
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	2 cut(s)	522, 870
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	3 cut(s)	85, 777, 962
HpyCH4V	TGCA	6 cut(s)	62, 180, 248, 257, 301, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 254, 353, 803
HpyF3I	CTNAG	3 cut(s)	364, 574, 940
Hsp92II	CATG	3 cut(s)	145, 180, 274
LmnI	GCTCC	3 cut(s)	359, 860, 1020
Lsp1109I	GCAGC	1 cut(s)	262
MabI	ACCWGGT	1 cut(s)	888
MaeI	CTAG	2 cut(s)	158, 1033
MaeIII	GTNAC	3 cut(s)	172, 485, 577
MboII	GAAGA	5 cut(s)	48, 565, 586, 845, 1001
MluCI	AATT	3 cut(s)	288, 472, 836
MlyI	GAGTC	1 cut(s)	809
MseI	TTAA	3 cut(s)	206, 422, 957
MspR9I	CCNGG	5 cut(s)	526, 655, 698, 890, 948
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	5 cut(s)	526, 655, 698, 890, 948
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	4 cut(s)	186, 254, 353, 803
NdeI	CATATG	2 cut(s)	72, 435
NlaIII	CATG	3 cut(s)	145, 180, 274
NlaIV	GGNNCC	3 cut(s)	51, 361, 387
NmuCI	GTSAC	2 cut(s)	172, 577
NspI	RCATGY	1 cut(s)	180
PagI	TCATGA	1 cut(s)	141
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	67, 644
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	809
Psp6I	CCWGG	5 cut(s)	524, 653, 696, 888, 946
PspFI	CCCAGC	1 cut(s)	562
PspGI	CCWGG	5 cut(s)	524, 653, 696, 888, 946
PspN4I	GGNNCC	3 cut(s)	51, 361, 387
PspPI	GGNCC	3 cut(s)	386, 477, 758
PstNI	CAGNNNCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	412, 887
RsaNI	GTAC	2 cut(s)	411, 886
SaqAI	TTAA	3 cut(s)	206, 422, 957
SatI	GCNGC	1 cut(s)	276
Sau96I	GGNCC	3 cut(s)	386, 477, 758
ScaI	AGTACT	1 cut(s)	412
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	5 cut(s)	526, 655, 698, 890, 948
SexAI	ACCWGGT	1 cut(s)	888
SinI	GGWCC	2 cut(s)	477, 758
Sse9I	AATT	3 cut(s)	288, 472, 836
SsiI	CCGC	2 cut(s)	104, 626
SspMI	CTAG	2 cut(s)	158, 1033
StyD4I	CCNGG	5 cut(s)	524, 653, 696, 888, 946
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	3 cut(s)	85, 777, 962
TaqI	TCGA	1 cut(s)	233
TasI	AATT	3 cut(s)	288, 472, 836
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	2 cut(s)	67, 644
Tru1I	TTAA	3 cut(s)	206, 422, 957
Tru9I	TTAA	3 cut(s)	206, 422, 957
TscAI	CASTG	4 cut(s)	129, 768, 780, 948
TseFI	GTSAC	2 cut(s)	172, 577
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	2 cut(s)	172, 577
TspDTI	ATGAA	3 cut(s)	59, 85, 158
TspRI	CASTG	4 cut(s)	129, 768, 780, 948
VpaK11BI	GGWCC	2 cut(s)	477, 758
XapI	RAATTY	1 cut(s)	836
XceI	RCATGY	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XmaJI	CCTAGG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	521
XspI	CTAG	2 cut(s)	158, 1033
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.