Rh2BG139200

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005515
Physical Location & Seq
Reverse (-)
11905814 .. 11907882
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG139200.1

Sequence Viewer

Length: 1152 bp
ATGGCTGATGAGGCTAATTCATCATCAAGTACTAGTAGAGCTCATGGCAAGAGACTATGGTGTATGATGCCTGAACGTGCCCGGATTCACATGGCATTGACTGCCCTGCAGTTCAGTTATGCAGGGCAACATGTCATCCTCAGAACTGTGCTTAACATGGGTGTAAGCAAGTTTGTGTTCCCAGTTTACAGGAACATCATCGCGCTGCTTCTGCTCGGTCCCTTTGCATACTTTCTAGAGAAGAAAGATAGACCACCACTAAATTTTGGCCTTGTCATGCAGTTTTTCCTCATGGGACTTCTTGGGATCACATGCAATCAAGGATTGTACCTCTTGGGTTTGGAAAACACTTCGCCAACATTTGCTTCCGCAATAGAGAATGCAGTCCCTGCAATTACATTTTTCATGGCTACACTATTCAGAATTGAACAAGTTCACTTGAATAGAAAAGATGGCAAAGCCAAGGTGCTTGGAACTCTGGCTTCTGTTGCTGGAGCCTCAGTCATAACCATTTACAAAGGGCCAACAATTTATGGACCCCCAAGTGATTCACAATATTTAAACCAATCTCATTCTCTGTTCTCATCATTTGGAGATGCCAAGGAGAAGAATTGGACCTTGGGATGCATATGTCTAATTGGTCATTGCCTGTGTTGGTCTAGCTGGATTGTGCTACAAGCACCGGTTTTGAAGAAATACCCAGCTCGCCTTTCAGTCACCTCATTTACTTGCTTCTTTGGCATTCTGCAATGTTCTGCAATCGCGGGGATTGTAGAGAGAGATTCCCAAGCCTGGCAGGTCCATTCTGGTGGTGAAGTTGTTGCTATTCTCTACGCGGGAGTGGTGGCTTCAGCAATGGCATTTGCATTACAGATATGGGTGATTGAACGAGGAGGCCCAGTGTTCGTTTCAGTGTACCTGCCTCTACAGACATTACTGGTAGCTCTAATGGCCTCAGTCATTTTAGGTGAACAATTCTACTTGGGAGGCATTATTGGAGCAGTATTGATCGTAGCCGGACTCTACCTGGTGGTCTGGGGGAAAAATGAAGAGAGCAAGTTTGGCAATGAAAATGGTGAAATTCACCGATCAATGCCTGCAGATGAACGATTCTCTCTCTTTCAGTCATTACTCGGTTCCTCTTCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

383

Amino Acids

41.84

Weight (kDa)

8.84

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 37 - 170 1.7e-13 EamA-like transporter family
EamA PF00892 207 - 345 3.9e-17 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 787, 927
AccII CGCG 3 cut(s) 203, 764, 836
AciI CCGC 3 cut(s) 369, 764, 836
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 2 cut(s) 262, 1080
AcuI CTGAAG 1 cut(s) 834
AfaI GTAC 3 cut(s) 31, 329, 917
AfiI CCNNNNNNNGG 1 cut(s) 792
AflIII ACRYGT 1 cut(s) 130
AgeI ACCGGT 1 cut(s) 682
AgsI TTSAA 4 cut(s) 428, 442, 691, 887
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 2 cut(s) 791, 1026
AjuI GAANNNNNNNTTGG 4 cut(s) 349, 381, 602, 634
AluBI AGCT 4 cut(s) 41, 663, 704, 944
AluI AGCT 4 cut(s) 41, 663, 704, 944
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 314
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 4 cut(s) 268, 521, 895, 951
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 2 cut(s) 262, 1080
AsiGI ACCGGT 1 cut(s) 682
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 6 cut(s) 709, 824, 892, 980, 1076, 1088
AsuII TTCGAA 1 cut(s) 1145
AvaII GGWCC 4 cut(s) 218, 536, 615, 799
BaeGI GKGCMC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 446
BciT130I CCWGG 2 cut(s) 793, 1028
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 46
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 3 cut(s) 33, 236, 660
BfmI CTRYAG 3 cut(s) 107, 926, 1098
BfuAI ACCTGC 2 cut(s) 787, 927
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 3 cut(s) 82, 793, 1028
Bme18I GGWCC 4 cut(s) 218, 536, 615, 799
BmgT120I GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
BmiI GGNNCC 4 cut(s) 220, 496, 538, 1138
BmrFI CCNGG 3 cut(s) 82, 793, 1028
BmrI ACTGGG 2 cut(s) 176, 893
BmsI GCATC 3 cut(s) 57, 586, 614
BmuI ACTGGG 2 cut(s) 176, 893
BpmI CTGGAG 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 1145
BpuMI CCSGG 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 462, 600, 618
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 885, 915
Bsc4I CCNNNNNNNGG 1 cut(s) 792
Bse118I RCCGGY 1 cut(s) 682
Bse1I ACTGG 3 cut(s) 182, 899, 942
Bse3DI GCAATG 4 cut(s) 643, 755, 861, 1072
BseBI CCWGG 2 cut(s) 793, 1028
BseDI CCNNGG 3 cut(s) 462, 600, 618
BseGI GGATG 2 cut(s) 135, 629
BseLI CCNNNNNNNGG 1 cut(s) 792
BseMI GCAATG 4 cut(s) 643, 755, 861, 1072
BseMII CTCAG 3 cut(s) 154, 513, 969
BseNI ACTGG 3 cut(s) 182, 899, 942
BseRI GAGGAG 1 cut(s) 906
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 700
Bsh1236I CGCG 3 cut(s) 203, 764, 836
BshFI GGCC 4 cut(s) 270, 523, 897, 953
BshTI ACCGGT 1 cut(s) 682
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 3 cut(s) 82, 683, 1017
BslFI GGGAC 3 cut(s) 204, 309, 371
BslI CCNNNNNNNGG 1 cut(s) 792
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 3 cut(s) 204, 309, 371
BsmI GAATGC 2 cut(s) 385, 741
BsnI GGCC 4 cut(s) 270, 523, 897, 953
Bsp119I TTCGAA 1 cut(s) 1145
Bsp1286I GDGCHC 2 cut(s) 43, 82
Bsp143I GATC 3 cut(s) 306, 1008, 1088
BspACI CCGC 3 cut(s) 369, 764, 836
BspANI GGCC 4 cut(s) 270, 523, 897, 953
BspCNI CTCAG 3 cut(s) 153, 512, 968
BspFNI CGCG 3 cut(s) 203, 764, 836
BspLI GGNNCC 4 cut(s) 220, 496, 538, 1138
BspMAI CTGCAG 2 cut(s) 111, 1102
BspMI ACCTGC 2 cut(s) 787, 927
BspPI GGATC 1 cut(s) 314
BspT104I TTCGAA 1 cut(s) 1145
BsrDI GCAATG 4 cut(s) 643, 755, 861, 1072
BsrFI RCCGGY 1 cut(s) 682
BsrI ACTGG 3 cut(s) 182, 899, 942
BssAI RCCGGY 1 cut(s) 682
BssECI CCNNGG 3 cut(s) 462, 600, 618
BssMI GATC 3 cut(s) 306, 1008, 1088
BssT1I CCWWGG 3 cut(s) 462, 600, 618
Bst2UI CCWGG 2 cut(s) 793, 1028
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 1044, 1147
BstAPI GCANNNNNTGC 2 cut(s) 101, 389
BstBI TTCGAA 1 cut(s) 1145
BstC8I GCNNGC 2 cut(s) 706, 1098
BstDEI CTNAG 3 cut(s) 140, 499, 955
BstF5I GGATG 2 cut(s) 135, 629
BstFNI CGCG 3 cut(s) 203, 764, 836
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 3 cut(s) 309, 1011, 1091
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 3 cut(s) 306, 1008, 1088
BstMWI GCNNNNNNNGC 8 cut(s) 11, 101, 211, 389, 488, 738, 950, 1062
BstNI CCWGG 2 cut(s) 793, 1028
BstNSI RCATGY 2 cut(s) 134, 315
BstSCI CCNGG 3 cut(s) 80, 791, 1026
BstSFI CTRYAG 3 cut(s) 107, 926, 1098
BstSLI GKGCMC 1 cut(s) 82
BstUI CGCG 3 cut(s) 203, 764, 836
BstV1I GCAGC 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 809
BsuRI GGCC 4 cut(s) 270, 523, 897, 953
BtgZI GCGATG 1 cut(s) 184
BtsCI GGATG 2 cut(s) 135, 629
BtsIMutI CAGTG 2 cut(s) 906, 918
BveI ACCTGC 2 cut(s) 787, 927
Cac8I GCNNGC 2 cut(s) 706, 1098
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 682
Cfr13I GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
CsiI ACCWGGT 1 cut(s) 1026
Csp6I GTAC 3 cut(s) 30, 328, 916
CspAI ACCGGT 1 cut(s) 682
CviAII CATG 8 cut(s) 44, 91, 131, 157, 277, 292, 312, 406
CviQI GTAC 3 cut(s) 30, 328, 916
DdeI CTNAG 3 cut(s) 140, 499, 955
DpnI GATC 3 cut(s) 308, 1010, 1090
DpnII GATC 3 cut(s) 306, 1008, 1088
DraI TTTAAA 1 cut(s) 561
Eam1104I CTCTTC 2 cut(s) 1044, 1147
EarI CTCTTC 2 cut(s) 1044, 1147
Ecl136II GAGCTC 1 cut(s) 41
Eco130I CCWWGG 3 cut(s) 462, 600, 618
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 4 cut(s) 218, 536, 615, 799
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 834
EcoICRI GAGCTC 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 791, 1026
EcoT14I CCWWGG 3 cut(s) 462, 600, 618
EcoT22I ATGCAT 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 3 cut(s) 462, 600, 618
FaeI CATG 8 cut(s) 47, 94, 134, 160, 280, 295, 315, 409
FaqI GGGAC 3 cut(s) 204, 309, 371
FatI CATG 8 cut(s) 43, 90, 130, 156, 276, 291, 311, 405
FauI CCCGC 2 cut(s) 757, 829
FauNDI CATATG 1 cut(s) 629
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 2 cut(s) 122, 636
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 3 cut(s) 33, 236, 660
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 206
GsaI CCCAGC 1 cut(s) 704
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 4 cut(s) 270, 523, 897, 953
HapII CCGG 3 cut(s) 82, 683, 1017
HhaI GCGC 1 cut(s) 205
Hin1II CATG 8 cut(s) 47, 94, 134, 160, 280, 295, 315, 409
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 5 cut(s) 85, 548, 782, 1020, 1110
HpaII CCGG 3 cut(s) 82, 683, 1017
HphI GGTGA 6 cut(s) 709, 824, 892, 980, 1076, 1088
Hpy166II GTNNAC 4 cut(s) 187, 436, 916, 971
Hpy188I TCNGA 2 cut(s) 143, 422
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 4 cut(s) 187, 436, 916, 971
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 101, 211, 389, 488, 738, 950, 1062
HpyF3I CTNAG 3 cut(s) 140, 499, 955
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 8 cut(s) 47, 94, 134, 160, 280, 295, 315, 409
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 3 cut(s) 306, 1008, 1088
LmnI GCTCC 2 cut(s) 494, 998
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 3 cut(s) 57, 586, 614
MabI ACCWGGT 1 cut(s) 1026
MaeI CTAG 3 cut(s) 33, 236, 660
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 715
MalI GATC 3 cut(s) 308, 1010, 1090
MboI GATC 3 cut(s) 306, 1008, 1088
MboII GAAGA 5 cut(s) 253, 619, 703, 1061, 1134
MhlI GDGCHC 2 cut(s) 43, 82
MluCI AATT 9 cut(s) 16, 262, 393, 423, 528, 610, 636, 974, 1080
MlyI GAGTC 1 cut(s) 1014
Mph1103I ATGCAT 1 cut(s) 629
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 2 cut(s) 153, 560
MslI CAYNNNNRTG 1 cut(s) 807
MspI CCGG 3 cut(s) 82, 683, 1017
MspR9I CCNGG 3 cut(s) 82, 793, 1028
Mva1269I GAATGC 2 cut(s) 385, 741
MvaI CCWGG 2 cut(s) 793, 1028
MvnI CGCG 3 cut(s) 203, 764, 836
MwoI GCNNNNNNNGC 8 cut(s) 11, 101, 211, 389, 488, 738, 950, 1062
NciI CCSGG 1 cut(s) 82
NdeI CATATG 1 cut(s) 629
NdeII GATC 3 cut(s) 306, 1008, 1088
NlaIII CATG 8 cut(s) 47, 94, 134, 160, 280, 295, 315, 409
NlaIV GGNNCC 4 cut(s) 220, 496, 538, 1138
NmuCI GTSAC 1 cut(s) 715
NsiI ATGCAT 1 cut(s) 629
NspI RCATGY 2 cut(s) 134, 315
NspV TTCGAA 1 cut(s) 1145
PciI ACATGT 1 cut(s) 130
PctI GAATGC 2 cut(s) 385, 741
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 4 cut(s) 85, 548, 782, 1110
PinAI ACCGGT 1 cut(s) 682
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 1 cut(s) 1014
PpsI GAGTC 1 cut(s) 1014
PscI ACATGT 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 791, 1026
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 2 cut(s) 791, 1026
PspN4I GGNNCC 4 cut(s) 220, 496, 538, 1138
PspPI GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
PstI CTGCAG 2 cut(s) 111, 1102
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 3 cut(s) 31, 329, 917
RsaNI GTAC 3 cut(s) 30, 328, 916
RseI CAYNNNNRTG 1 cut(s) 807
SacI GAGCTC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 153, 560
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 3 cut(s) 306, 1008, 1088
Sau96I GGNCC 6 cut(s) 218, 521, 536, 615, 799, 896
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 1 cut(s) 1014
ScrFI CCNGG 3 cut(s) 82, 793, 1028
SduI GDGCHC 2 cut(s) 43, 82
SexAI ACCWGGT 1 cut(s) 1026
SfaNI GCATC 3 cut(s) 57, 586, 614
SfcI CTRYAG 3 cut(s) 107, 926, 1098
SfuI TTCGAA 1 cut(s) 1145
SinI GGWCC 4 cut(s) 218, 536, 615, 799
SmiMI CAYNNNNRTG 1 cut(s) 807
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 9 cut(s) 16, 262, 393, 423, 528, 610, 636, 974, 1080
SsiI CCGC 3 cut(s) 369, 764, 836
SspI AATATT 1 cut(s) 557
SspMI CTAG 3 cut(s) 33, 236, 660
SstI GAGCTC 1 cut(s) 43
StyD4I CCNGG 3 cut(s) 80, 791, 1026
StyI CCWWGG 3 cut(s) 462, 600, 618
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 1145
TaqII GACCGA 1 cut(s) 206
TasI AATT 9 cut(s) 16, 262, 393, 423, 528, 610, 636, 974, 1080
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 4 cut(s) 85, 548, 782, 1110
Tru1I TTAA 2 cut(s) 153, 560
Tru9I TTAA 2 cut(s) 153, 560
TscAI CASTG 2 cut(s) 906, 918
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 5 cut(s) 9, 394, 1062, 1083, 1119
TspRI CASTG 2 cut(s) 906, 918
VpaK11BI GGWCC 4 cut(s) 218, 536, 615, 799
XapI RAATTY 2 cut(s) 262, 1080
XbaI TCTAGA 1 cut(s) 235
XceI RCATGY 2 cut(s) 134, 315
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 3 cut(s) 33, 236, 660
ZrmI AGTACT 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.