Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002547.1

Orthogroup ID

OG0005515

Physical Location & Seq

Genomic Coordinates Reverse (-)

18739 .. 23037

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002547.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atggctgatgaggccggttcacatggcaagagagtgtgtatggtgcctgaacttgcgaggattcacatggctttaactttcctgcagtcgagcaatgcagtgcaacatatcgtcatcaggagtgtgctaaacatgggtgtgaaccagcttattttcccagtttacaggagcatcaccgcgctgcttctgctttttccctttgcatactttttggagagggtcacctgcaatcaaggattctacctcttgggtttggagaacacatcagccacatttgtttctgcagtagagaatgcagtccctgcaggaacatttctcatggctgccgtattaagcattgaacaagttcatttgaatagaaaagatggcaaagccaaagtgcttggtgttctggcttctgttgcaggagcctcagtcataaccttttacaaggggccaactatatatgttcctccaaggacttcaccttcaggccaatcccatatgctcctctcgttatttggagatgccagggagaagaactggacctttggtggcatttgtgctataggtcattgcgtatgttggtttagctggattgtcctacaaggacctgttttgaagaagtacccagctcgcctctcagtcacctcatttactctcttctttggcattctgcaactttcagcaattgcagcgtatgtagagagagactcccaagagtggcagatccattccggcagtgcaatcttgggcattctctacgtgggagtggtggcttcagcaatgtcttatgcaatacagctatgggcgattgacaagggaggaccggtgtttgtttcagtgtatatgcctctacagacgttactcgtagatataatggactcggtcattatgggtgcacaattctacttgggaggaattgaacaaatgcacttgaatagaaaatatggtaaagccaaagtgcttggaactcttgcttctgttgctggagcctcagtcataaccttttacaaggggccaactatttatgttcctccaagtacttcacctttaagccaatcccatatgctcaactcattatttggagatgtcaaggaggagaattggacctttggttacatctgtagagagattcccaagcctggcagttccattacggcagtgaagtctttcccattctctacatgggagtggggggcttcagcaatggcgaatgtaatacagatatgggtgattgacaagggaggaccagtgtatgtttcactgtatctgcctttacagacggcagtagtagctgtaatggactcgctcgtttttggtgaagaattctacttgggaagggctggacctggtggtctggggaaaaaggcaggagagcaaaatcaaggtggaaacttcctcaatgccagggaacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

466

Amino Acids

50.59

Weight (kDa)

8.74

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12390 FvH4_1g12390
rosa_chinensis	RchiOBHm_Chr2g0100221 RchiOBHm_Chr2g0100231 RchiOBHm_Chr2g0100241
rosa_laevigata	RLG00000016947 RLG00000016948 RLG00000016949
rosa_multiflora	Rmu_sc0002547.1_g000006 Rmu_sc0002547.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142450 Rroxscaffold_2G00142460 Rroxscaffold_2G00142470
rosa_rugosa	Rorug02G0086600 Rorug02G0086700
rosa_samantha	Rh2AG135600 Rh2AG135700 Rh2BG139000 Rh2BG139100 Rh2BG139200 Rh2CG140800 Rh2CG140900 Rh2CG141000 Rh2DG141000 Rh2DG141100 Rh2DG141200
rosa_wichuraiana	Rw2G010590 Rw2G010600 Rw2G010610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
AasI	GACNNNNNNGTC	1 cut(s)	1335
Acc36I	ACCTGC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	43
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	703
AcsI	RAATTY	1 cut(s)	1307
AcuI	CTGAAG	3 cut(s)	453, 744, 1167
AfaI	GTAC	2 cut(s)	608, 1024
AfiI	CCNNNNNNNGG	2 cut(s)	702, 1124
AgeI	ACCGGT	1 cut(s)	808
AgsI	TTSAA	5 cut(s)	341, 355, 601, 905, 919
AjnI	CCWGG	4 cut(s)	509, 1123, 1330, 1388
AluBI	AGCT	5 cut(s)	148, 573, 614, 784, 1277
AluI	AGCT	5 cut(s)	148, 573, 614, 784, 1277
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	1 cut(s)	684
Alw44I	GTGCAC	1 cut(s)	879
AlwI	GGATC	1 cut(s)	703
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	4 cut(s)	12, 434, 472, 998
ApaLI	GTGCAC	1 cut(s)	879
ApeKI	GCWGC	3 cut(s)	181, 323, 674
ApoI	RAATTY	1 cut(s)	1307
AsiGI	ACCGGT	1 cut(s)	808
Asp700I	GAANNNNTTC	2 cut(s)	345, 1151
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	8 cut(s)	434, 525, 590, 806, 998, 1089, 1229, 1328
AsuHPI	GGTGA	7 cut(s)	166, 214, 456, 619, 1020, 1225, 1313
AvaII	GGWCC	6 cut(s)	525, 590, 806, 1089, 1229, 1328
BaeGI	GKGCMC	1 cut(s)	883
BanI	GGYRCC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	883
BbvI	GCAGC	3 cut(s)	168, 310, 686
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	3 cut(s)	311, 1155, 1281
BciT130I	CCWGG	4 cut(s)	511, 1125, 1332, 1390
BcoDI	GTCTC	1 cut(s)	684
BfmI	CTRYAG	6 cut(s)	83, 282, 303, 546, 836, 1105
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	3 cut(s)	182, 324, 675
BlsI	GCNGC	3 cut(s)	183, 325, 676
BmcAI	AGTACT	1 cut(s)	1024
Bme1390I	CCNGG	4 cut(s)	511, 1125, 1332, 1390
Bme18I	GGWCC	6 cut(s)	525, 590, 806, 1089, 1229, 1328
BmgT120I	GGNCC	8 cut(s)	434, 525, 590, 806, 998, 1089, 1229, 1328
BmiI	GGNNCC	5 cut(s)	45, 409, 435, 973, 999
BmrFI	CCNGG	4 cut(s)	511, 1125, 1332, 1390
BmrI	ACTGGG	1 cut(s)	152
BmsI	GCATC	2 cut(s)	180, 496
BmuI	ACTGGG	1 cut(s)	152
BplI	GAGNNNNNCTC	2 cut(s)	677, 709
BpmI	CTGGAG	1 cut(s)	990
BsaAI	YACGTR	1 cut(s)	745
BsaJI	CCNNGG	3 cut(s)	455, 510, 1389
BsaWI	WCCGGW	1 cut(s)	808
BsaXI	ACNNNNNCTCC	8 cut(s)	399, 429, 795, 825, 963, 993, 1218, 1248
Bsc4I	CCNNNNNNNGG	2 cut(s)	702, 1124
Bse118I	RCCGGY	2 cut(s)	14, 808
Bse1I	ACTGG	3 cut(s)	158, 527, 1232
Bse3DI	GCAATG	4 cut(s)	100, 553, 771, 1194
BseBI	CCWGG	4 cut(s)	511, 1125, 1332, 1390
BseDI	CCNNGG	3 cut(s)	455, 510, 1389
BseLI	CCNNNNNNNGG	2 cut(s)	702, 1124
BseMI	GCAATG	4 cut(s)	100, 553, 771, 1194
BseMII	CTCAG	3 cut(s)	426, 636, 990
BseNI	ACTGG	3 cut(s)	158, 527, 1232
BseRI	GAGGAG	2 cut(s)	479, 1094
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	3 cut(s)	168, 310, 686
BseYI	CCCAGC	1 cut(s)	610
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	14, 436, 474, 1000
BshNI	GGYRCC	1 cut(s)	43
BshTI	ACCGGT	1 cut(s)	808
BsiHKAI	GWGCWC	1 cut(s)	883
BsiSI	CCGG	3 cut(s)	15, 717, 809
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	702, 1124
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	3 cut(s)	298, 651, 735
BsnI	GGCC	4 cut(s)	14, 436, 474, 1000
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	1 cut(s)	708
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	4 cut(s)	14, 436, 474, 1000
BspCNI	CTCAG	3 cut(s)	425, 635, 989
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	5 cut(s)	45, 409, 435, 973, 999
BspMAI	CTGCAG	3 cut(s)	87, 286, 307
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	703
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	4 cut(s)	100, 553, 771, 1194
BsrFI	RCCGGY	2 cut(s)	14, 808
BsrI	ACTGG	3 cut(s)	158, 527, 1232
BssAI	RCCGGY	2 cut(s)	14, 808
BssECI	CCNNGG	3 cut(s)	455, 510, 1389
BssMI	GATC	1 cut(s)	708
BssT1I	CCWWGG	1 cut(s)	455
Bst2UI	CCWGG	4 cut(s)	511, 1125, 1332, 1390
Bst4CI	ACNGT	1 cut(s)	1248
Bst6I	CTCTTC	1 cut(s)	647
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	745
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	3 cut(s)	412, 622, 976
BstEII	GGTNACC	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	711
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	1 cut(s)	708
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 187, 302, 401, 674, 965, 1274
BstNI	CCWGG	4 cut(s)	511, 1125, 1332, 1390
BstPI	GGTNACC	1 cut(s)	220
BstSCI	CCNGG	4 cut(s)	509, 1123, 1330, 1388
BstSFI	CTRYAG	6 cut(s)	83, 282, 303, 546, 836, 1105
BstSLI	GKGCMC	1 cut(s)	883
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	168, 310, 686
BstX2I	RGATCY	1 cut(s)	708
BstYI	RGATCY	1 cut(s)	708
BsuRI	GGCC	4 cut(s)	14, 436, 474, 1000
BtsI	GCAGTG	3 cut(s)	105, 727, 1149
BtsIMutI	CAGTG	6 cut(s)	105, 727, 828, 1149, 1239, 1244
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	616
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	2 cut(s)	14, 808
Cfr13I	GGNCC	8 cut(s)	434, 525, 590, 806, 998, 1089, 1229, 1328
CsiI	ACCWGGT	1 cut(s)	1330
Csp6I	GTAC	2 cut(s)	607, 1023
CspAI	ACCGGT	1 cut(s)	808
CviAII	CATG	5 cut(s)	23, 67, 133, 319, 1167
CviQI	GTAC	2 cut(s)	607, 1023
DdeI	CTNAG	3 cut(s)	412, 622, 976
DpnI	GATC	1 cut(s)	710
DpnII	GATC	1 cut(s)	708
DrdI	GACNNNNNNGTC	1 cut(s)	1335
DseDI	GACNNNNNNGTC	1 cut(s)	1335
Eam1104I	CTCTTC	1 cut(s)	647
EarI	CTCTTC	1 cut(s)	647
Eco130I	CCWWGG	1 cut(s)	455
Eco47I	GGWCC	6 cut(s)	525, 590, 806, 1089, 1229, 1328
Eco57I	CTGAAG	3 cut(s)	453, 744, 1167
Eco91I	GGTNACC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	590
EcoO65I	GGTNACC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	1307
EcoRII	CCWGG	4 cut(s)	509, 1123, 1330, 1388
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	5 cut(s)	26, 70, 136, 322, 1170
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	5 cut(s)	22, 66, 132, 318, 1166
FauNDI	CATATG	2 cut(s)	483, 1047
Fnu4HI	GCNGC	3 cut(s)	182, 324, 675
Fsp4HI	GCNGC	3 cut(s)	182, 324, 675
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	3 cut(s)	182, 324, 675
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	990
HaeIII	GGCC	4 cut(s)	14, 436, 474, 1000
HapII	CCGG	3 cut(s)	15, 717, 809
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	5 cut(s)	26, 70, 136, 322, 1170
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	6 cut(s)	61, 237, 692, 863, 1114, 1286
HpaII	CCGG	3 cut(s)	15, 717, 809
HphI	GGTGA	7 cut(s)	166, 214, 456, 619, 1020, 1225, 1313
Hpy166II	GTNNAC	4 cut(s)	20, 142, 163, 881
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	4 cut(s)	20, 142, 163, 881
HpyAV	CCTTC	2 cut(s)	477, 1314
HpyCH4III	ACNGT	1 cut(s)	1248
HpyCH4IV	ACGT	2 cut(s)	744, 842
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 187, 302, 401, 674, 965, 1274
HpyF3I	CTNAG	3 cut(s)	412, 622, 976
HpySE526I	ACGT	2 cut(s)	744, 842
Hsp92II	CATG	5 cut(s)	26, 70, 136, 322, 1170
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	708
LmnI	GCTCC	4 cut(s)	168, 407, 492, 971
Lsp1109I	GCAGC	3 cut(s)	168, 310, 686
LweI	GCATC	2 cut(s)	180, 496
MabI	ACCWGGT	1 cut(s)	1330
MaeII	ACGT	2 cut(s)	744, 842
MaeIII	GTNAC	4 cut(s)	220, 625, 843, 1097
MalI	GATC	1 cut(s)	710
MboI	GATC	1 cut(s)	708
MboII	GAAGA	4 cut(s)	529, 613, 634, 1316
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	1 cut(s)	708
MhlI	GDGCHC	1 cut(s)	883
MluCI	AATT	5 cut(s)	669, 884, 900, 1084, 1307
MlyI	GAGTC	3 cut(s)	686, 857, 1280
MroXI	GAANNNNTTC	2 cut(s)	345, 1151
MseI	TTAA	4 cut(s)	74, 332, 1034, 1399
MslI	CAYNNNNRTG	2 cut(s)	137, 1171
MspI	CCGG	3 cut(s)	15, 717, 809
MspR9I	CCNGG	4 cut(s)	511, 1125, 1332, 1390
MunI	CAATTG	1 cut(s)	669
Mva1269I	GAATGC	3 cut(s)	298, 651, 735
MvaI	CCWGG	4 cut(s)	511, 1125, 1332, 1390
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	7 cut(s)	11, 187, 302, 401, 674, 965, 1274
NdeI	CATATG	2 cut(s)	483, 1047
NdeII	GATC	1 cut(s)	708
NlaIII	CATG	5 cut(s)	26, 70, 136, 322, 1170
NlaIV	GGNNCC	5 cut(s)	45, 409, 435, 973, 999
NmuCI	GTSAC	2 cut(s)	220, 625
PaqCI	CACCTGC	1 cut(s)	233
PctI	GAATGC	3 cut(s)	298, 651, 735
PdmI	GAANNNNTTC	2 cut(s)	345, 1151
PfeI	GAWTC	3 cut(s)	61, 237, 1114
PflFI	GACNNNGTC	1 cut(s)	866
PinAI	ACCGGT	1 cut(s)	808
PkrI	GCNGC	3 cut(s)	183, 325, 676
PleI	GAGTC	3 cut(s)	686, 857, 1280
PpsI	GAGTC	3 cut(s)	686, 857, 1280
Ppu21I	YACGTR	1 cut(s)	745
PpuMI	RGGWCCY	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	590
Psp6I	CCWGG	4 cut(s)	509, 1123, 1330, 1388
PspEI	GGTNACC	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	4 cut(s)	509, 1123, 1330, 1388
PspN4I	GGNNCC	5 cut(s)	45, 409, 435, 973, 999
PspPI	GGNCC	8 cut(s)	434, 525, 590, 806, 998, 1089, 1229, 1328
PspPPI	RGGWCCY	1 cut(s)	590
PstI	CTGCAG	3 cut(s)	87, 286, 307
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	708
PsyI	GACNNNGTC	1 cut(s)	866
RsaI	GTAC	2 cut(s)	608, 1024
RsaNI	GTAC	2 cut(s)	607, 1023
RseI	CAYNNNNRTG	2 cut(s)	137, 1171
SaqAI	TTAA	4 cut(s)	74, 332, 1034, 1399
SatI	GCNGC	3 cut(s)	182, 324, 675
Sau3AI	GATC	1 cut(s)	708
Sau96I	GGNCC	8 cut(s)	434, 525, 590, 806, 998, 1089, 1229, 1328
SbfI	CCTGCAGG	1 cut(s)	307
ScaI	AGTACT	1 cut(s)	1024
SchI	GAGTC	3 cut(s)	686, 857, 1280
ScrFI	CCNGG	4 cut(s)	511, 1125, 1332, 1390
SdaI	CCTGCAGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	883
SexAI	ACCWGGT	1 cut(s)	1330
SfaNI	GCATC	2 cut(s)	180, 496
SfcI	CTRYAG	6 cut(s)	83, 282, 303, 546, 836, 1105
SinI	GGWCC	6 cut(s)	525, 590, 806, 1089, 1229, 1328
SmiMI	CAYNNNNRTG	2 cut(s)	137, 1171
Sse8387I	CCTGCAGG	1 cut(s)	307
Sse9I	AATT	5 cut(s)	669, 884, 900, 1084, 1307
SsiI	CCGC	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	509, 1123, 1330, 1388
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	1248
TaiI	ACGT	2 cut(s)	747, 845
TaqI	TCGA	1 cut(s)	89
TaqII	GACCGA	1 cut(s)	856
TasI	AATT	5 cut(s)	669, 884, 900, 1084, 1307
TatI	WGTACW	1 cut(s)	1022
TfiI	GAWTC	3 cut(s)	61, 237, 1114
Tru1I	TTAA	4 cut(s)	74, 332, 1034, 1399
Tru9I	TTAA	4 cut(s)	74, 332, 1034, 1399
TscAI	CASTG	6 cut(s)	105, 727, 828, 1149, 1239, 1251
TseFI	GTSAC	2 cut(s)	220, 625
TseI	GCWGC	3 cut(s)	181, 323, 674
Tsp45I	GTSAC	2 cut(s)	220, 625
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	6 cut(s)	105, 727, 828, 1149, 1239, 1251
Tth111I	GACNNNGTC	1 cut(s)	866
VneI	GTGCAC	1 cut(s)	879
VpaK11BI	GGWCC	6 cut(s)	525, 590, 806, 1089, 1229, 1328
XapI	RAATTY	1 cut(s)	1307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1164
XmnI	GAANNNNTTC	2 cut(s)	345, 1151
ZrmI	AGTACT	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.