Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005515

Physical Location & Seq

Genomic Coordinates Forward (+)

80524526 .. 80524969

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCGGGGAGTGGTGGCTTCAGCAATGTCTTATGCAATACAGCTATGGGCGATGGACAAGGGAGGACCCATGTTTGTTTCAGTGTATATGCCTCTACAGATGTTACTCGTAGCTGTAATGGACTCGGTCATTCTGGGTGAACAATTCTTCTTGGGAGGCATTATTGGAGCAGTGTTGATCATAGCAGGACTGTACCTGGTGGCGTGGGGAAAAAGCAAAGAGAGCAAATTTGGCAAAGAAATCAAGATATATGGAACCTTCACCAGTGCCATTGAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0000902 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0005938 GO:0006521 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009705 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009826 GO:0009832 GO:0009834 GO:0009893 GO:0009914 GO:0009966 GO:0009987 GO:0010033 GO:0010315 GO:0010565 GO:0010646 GO:0010817 GO:0010928 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0019222 GO:0022857 GO:0023051 GO:0023052 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0032350 GO:0032352 GO:0032502 GO:0032870 GO:0032989 GO:0033238 GO:0033240 GO:0040007 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045764 GO:0048518 GO:0048522 GO:0048583 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060560 GO:0060918 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0080090 GO:0090354 GO:0090355 GO:0090357 GO:0090358 GO:0098588 GO:0098805 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

93

Amino Acids

10.09

Weight (kDa)

8.01

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	3 - 68	4.4e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12390 FvH4_1g12390
rosa_chinensis	RchiOBHm_Chr2g0100221 RchiOBHm_Chr2g0100231 RchiOBHm_Chr2g0100241
rosa_laevigata	RLG00000016947 RLG00000016948 RLG00000016949
rosa_multiflora	Rmu_sc0002547.1_g000006 Rmu_sc0002547.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142450 Rroxscaffold_2G00142460 Rroxscaffold_2G00142470
rosa_rugosa	Rorug02G0086600 Rorug02G0086700
rosa_samantha	Rh2AG135600 Rh2AG135700 Rh2BG139000 Rh2BG139100 Rh2BG139200 Rh2CG140800 Rh2CG140900 Rh2CG141000 Rh2DG141000 Rh2DG141100 Rh2DG141200
rosa_wichuraiana	Rw2G010590 Rw2G010600 Rw2G010610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	227
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	43, 113
AluI	AGCT	2 cut(s)	43, 113
ApoI	RAATTY	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	149, 253
AvaII	GGWCC	1 cut(s)	65
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	197
BclI	TGATCA	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	67, 256
BmrFI	CCNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	4
BspLI	GGNNCC	2 cut(s)	67, 256
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	192
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 231
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	65
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	3 cut(s)	87, 177, 271
Cfr13I	GGNCC	1 cut(s)	65
CsiI	ACCWGGT	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	3 cut(s)	17, 43, 113
CviKI_1	RGCY	3 cut(s)	17, 43, 113
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	73
FaiI	YATR	8 cut(s)	33, 46, 71, 87, 89, 182, 250, 252
FatI	CATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	177
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	2 cut(s)	149, 253
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 231
Hsp92II	CATG	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	5 cut(s)	119, 171, 182, 209, 277
MabI	ACCWGGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	1 cut(s)	139
MluCI	AATT	2 cut(s)	143, 227
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	3 cut(s)	56, 102, 149
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	222, 231
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	67, 256
PflFI	GACNNNGTC	1 cut(s)	125
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	67, 256
PspPI	GGNCC	1 cut(s)	65
PspPPI	RGGWCCY	1 cut(s)	65
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	4 cut(s)	45, 115, 198, 260
SexAI	ACCWGGT	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	2 cut(s)	143, 227
SsiI	CCGC	1 cut(s)	4
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	192
TaqII	GACCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	143, 227
TscAI	CASTG	3 cut(s)	87, 177, 271
TspRI	CASTG	3 cut(s)	87, 177, 271
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.