Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002547.1

Orthogroup ID

OG0005515

Physical Location & Seq

Genomic Coordinates Reverse (-)

47842 .. 49739

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002547.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggctgatgaggctggttcattatcaagtactagtagagctcatggcaagagactatggtgtatgatgcctgaacgtgcccggattcacatggcattgactgccctgcagttcagttatgcagggcaacatgtcatcctcagaactgtgcttaacatgggtgtaagcaagcttgtgttcccagtttacaggaacatcatcgcgctgctcctgctcggtccctttgcatactttctagagaagaaagatagaccaccgctaaattttggccttgtcatgcagtttttcctcatgggacttcttgggatcacatgcaatcaaggattgtacctcttgggtttggaaaacacttcgccaacatttgcttctgcaatagagaatgcagtccctgcaattacatttttcatggctacactattcaggcaaatattgttcatgagtcttgtagcaattcgtgctagctcatttgtatatgcttctgcaggaagcgttttaattgaacaagttcacttgaatagaaaagatggcaaagccaaggtgcttggaactctggcttctgttgctggagcctcagtcataaccatttacaaagggccaacaatttatggacccccaagtgattcacaatatttaaaccaatctcattctctgttctcatcatttggagatgccaaggagaagaattggaccttgggttgcatatgtctaattggtcattgcctgtgttggtctagctggattgtgctacaagcaccggttttgaagaaatacccagctcgcctttcagtcacctcatttacttgcttctttggcattctgcaatgttctgcaatcgcggggattgtagagagagattcccaagcctggcaggtccattctggtggtgaagttgttgctattctctacgcgggagtggtggcttcagcaatggcatttgcattacagatatgggtgattgaacgaggaggcccagtgttcgtttcagtgtacctgcctctacagacattactggtagctctaatggcctccgtcattttaggtgaacaattctacttgggaggcattattggagcagtactgatcgtagccggactctacctggtggtctgggggaaaaatgaagagagcaaatttggcaatgaaaatggtgaaattcaccgatcaatgcctgcagatgaacaattctctcactttcagtcattactcggttcctcttcgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

407

Amino Acids

44.29

Weight (kDa)

8.83

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12390 FvH4_1g12390
rosa_chinensis	RchiOBHm_Chr2g0100221 RchiOBHm_Chr2g0100231 RchiOBHm_Chr2g0100241
rosa_laevigata	RLG00000016947 RLG00000016948 RLG00000016949
rosa_multiflora	Rmu_sc0002547.1_g000006 Rmu_sc0002547.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142450 Rroxscaffold_2G00142460 Rroxscaffold_2G00142470
rosa_rugosa	Rorug02G0086600 Rorug02G0086700
rosa_samantha	Rh2AG135600 Rh2AG135700 Rh2BG139000 Rh2BG139100 Rh2BG139200 Rh2CG140800 Rh2CG140900 Rh2CG141000 Rh2DG141000 Rh2DG141100 Rh2DG141200
rosa_wichuraiana	Rw2G010590 Rw2G010600 Rw2G010610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	859, 999
AccII	CGCG	3 cut(s)	203, 836, 908
AciI	CCGC	3 cut(s)	257, 836, 908
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	3 cut(s)	262, 1130, 1152
AcuI	CTGAAG	1 cut(s)	906
AfaI	GTAC	4 cut(s)	31, 329, 989, 1077
AfiI	CCNNNNNNNGG	1 cut(s)	864
AflIII	ACRYGT	1 cut(s)	130
AgeI	ACCGGT	1 cut(s)	754
AgsI	TTSAA	4 cut(s)	500, 514, 763, 959
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	863, 1098
AjuI	GAANNNNNNNTTGG	4 cut(s)	349, 381, 674, 706
AluBI	AGCT	6 cut(s)	41, 172, 462, 735, 776, 1016
AluI	AGCT	6 cut(s)	41, 172, 462, 735, 776, 1016
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	4 cut(s)	268, 593, 967, 1023
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	3 cut(s)	262, 1130, 1152
AsiGI	ACCGGT	1 cut(s)	754
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	6 cut(s)	218, 593, 608, 687, 871, 968
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	6 cut(s)	781, 896, 964, 1052, 1148, 1160
AsuII	TTCGAA	1 cut(s)	1217
AsuNHI	GCTAGC	1 cut(s)	458
AvaII	GGWCC	4 cut(s)	218, 608, 687, 871
BaeGI	GKGCMC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	1 cut(s)	518
BciT130I	CCWGG	2 cut(s)	865, 1100
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	46
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	4 cut(s)	33, 236, 459, 732
BfmI	CTRYAG	4 cut(s)	107, 480, 998, 1170
BfuAI	ACCTGC	2 cut(s)	859, 999
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
BmcAI	AGTACT	2 cut(s)	31, 1077
Bme1390I	CCNGG	3 cut(s)	82, 865, 1100
Bme18I	GGWCC	4 cut(s)	218, 608, 687, 871
BmgT120I	GGNCC	6 cut(s)	218, 593, 608, 687, 871, 968
BmiI	GGNNCC	4 cut(s)	220, 568, 610, 1210
BmrFI	CCNGG	3 cut(s)	82, 865, 1100
BmrI	ACTGGG	2 cut(s)	176, 965
BmsI	GCATC	2 cut(s)	57, 658
BmtI	GCTAGC	1 cut(s)	462
BmuI	ACTGGG	2 cut(s)	176, 965
BpmI	CTGGAG	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	1217
BpuMI	CCSGG	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	534, 672, 690
BsaWI	WCCGGW	1 cut(s)	754
BsaXI	ACNNNNNCTCC	4 cut(s)	558, 588, 957, 987
Bsc4I	CCNNNNNNNGG	1 cut(s)	864
Bse118I	RCCGGY	1 cut(s)	754
Bse1I	ACTGG	3 cut(s)	182, 971, 1014
Bse3DI	GCAATG	4 cut(s)	715, 827, 933, 1144
BseBI	CCWGG	2 cut(s)	865, 1100
BseDI	CCNNGG	3 cut(s)	534, 672, 690
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	864
BseMI	GCAATG	4 cut(s)	715, 827, 933, 1144
BseMII	CTCAG	2 cut(s)	154, 585
BseNI	ACTGG	3 cut(s)	182, 971, 1014
BseRI	GAGGAG	1 cut(s)	978
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	772
Bsh1236I	CGCG	3 cut(s)	203, 836, 908
BshFI	GGCC	4 cut(s)	270, 595, 969, 1025
BshTI	ACCGGT	1 cut(s)	754
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	82, 755, 1089
BslFI	GGGAC	3 cut(s)	204, 309, 371
BslI	CCNNNNNNNGG	1 cut(s)	864
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	3 cut(s)	204, 309, 371
BsmI	GAATGC	2 cut(s)	385, 813
BsnI	GGCC	4 cut(s)	270, 595, 969, 1025
Bsp119I	TTCGAA	1 cut(s)	1217
Bsp1286I	GDGCHC	2 cut(s)	43, 82
Bsp143I	GATC	3 cut(s)	306, 1080, 1160
BspACI	CCGC	3 cut(s)	257, 836, 908
BspANI	GGCC	4 cut(s)	270, 595, 969, 1025
BspCNI	CTCAG	2 cut(s)	153, 584
BspFNI	CGCG	3 cut(s)	203, 836, 908
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	4 cut(s)	220, 568, 610, 1210
BspMAI	CTGCAG	3 cut(s)	111, 484, 1174
BspMI	ACCTGC	2 cut(s)	859, 999
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	314
BspT104I	TTCGAA	1 cut(s)	1217
BsrDI	GCAATG	4 cut(s)	715, 827, 933, 1144
BsrFI	RCCGGY	1 cut(s)	754
BsrI	ACTGG	3 cut(s)	182, 971, 1014
BssAI	RCCGGY	1 cut(s)	754
BssECI	CCNNGG	3 cut(s)	534, 672, 690
BssMI	GATC	3 cut(s)	306, 1080, 1160
BssT1I	CCWWGG	3 cut(s)	534, 672, 690
Bst2UI	CCWGG	2 cut(s)	865, 1100
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	2 cut(s)	1116, 1219
BstAPI	GCANNNNNTGC	3 cut(s)	101, 389, 455
BstBI	TTCGAA	1 cut(s)	1217
BstC8I	GCNNGC	4 cut(s)	170, 460, 778, 1170
BstDEI	CTNAG	2 cut(s)	140, 571
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	3 cut(s)	203, 836, 908
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	3 cut(s)	309, 1083, 1163
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	3 cut(s)	306, 1080, 1160
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 101, 211, 389, 455, 560, 810, 1022, 1134
BstNI	CCWGG	2 cut(s)	865, 1100
BstNSI	RCATGY	2 cut(s)	134, 315
BstSCI	CCNGG	3 cut(s)	80, 863, 1098
BstSFI	CTRYAG	4 cut(s)	107, 480, 998, 1170
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	3 cut(s)	203, 836, 908
BstV1I	GCAGC	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	881
BsuRI	GGCC	4 cut(s)	270, 595, 969, 1025
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	978, 990
BveI	ACCTGC	2 cut(s)	859, 999
Cac8I	GCNNGC	4 cut(s)	170, 460, 778, 1170
CaiI	CAGNNNCTG	1 cut(s)	389
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	754
Cfr13I	GGNCC	6 cut(s)	218, 593, 608, 687, 871, 968
CsiI	ACCWGGT	1 cut(s)	1098
Csp6I	GTAC	4 cut(s)	30, 328, 988, 1076
CspAI	ACCGGT	1 cut(s)	754
CviAII	CATG	9 cut(s)	44, 91, 131, 157, 277, 292, 312, 406, 436
CviQI	GTAC	4 cut(s)	30, 328, 988, 1076
DdeI	CTNAG	2 cut(s)	140, 571
DpnI	GATC	3 cut(s)	308, 1082, 1162
DpnII	GATC	3 cut(s)	306, 1080, 1160
DraI	TTTAAA	1 cut(s)	633
Eam1104I	CTCTTC	2 cut(s)	1116, 1219
EarI	CTCTTC	2 cut(s)	1116, 1219
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	3 cut(s)	534, 672, 690
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	4 cut(s)	218, 608, 687, 871
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	906
EcoICRI	GAGCTC	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	863, 1098
EcoT14I	CCWWGG	3 cut(s)	534, 672, 690
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	3 cut(s)	534, 672, 690
FaeI	CATG	9 cut(s)	47, 94, 134, 160, 280, 295, 315, 409, 439
FaqI	GGGAC	3 cut(s)	204, 309, 371
FatI	CATG	9 cut(s)	43, 90, 130, 156, 276, 291, 311, 405, 435
FauI	CCCGC	2 cut(s)	829, 901
FauNDI	CATATG	1 cut(s)	701
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	4 cut(s)	33, 236, 459, 732
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	206
GsaI	CCCAGC	1 cut(s)	776
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	4 cut(s)	270, 595, 969, 1025
HapII	CCGG	3 cut(s)	82, 755, 1089
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	9 cut(s)	47, 94, 134, 160, 280, 295, 315, 409, 439
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	5 cut(s)	85, 439, 620, 854, 1092
HpaII	CCGG	3 cut(s)	82, 755, 1089
HphI	GGTGA	6 cut(s)	781, 896, 964, 1052, 1148, 1160
Hpy166II	GTNNAC	4 cut(s)	187, 508, 988, 1043
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	236, 436
Hpy8I	GTNNAC	4 cut(s)	187, 508, 988, 1043
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 101, 211, 389, 455, 560, 810, 1022, 1134
HpyF3I	CTNAG	2 cut(s)	140, 571
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	9 cut(s)	47, 94, 134, 160, 280, 295, 315, 409, 439
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	3 cut(s)	306, 1080, 1160
LmnI	GCTCC	3 cut(s)	213, 566, 1070
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	2 cut(s)	57, 658
MabI	ACCWGGT	1 cut(s)	1098
MaeI	CTAG	4 cut(s)	33, 236, 459, 732
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	3 cut(s)	308, 1082, 1162
MboI	GATC	3 cut(s)	306, 1080, 1160
MboII	GAAGA	5 cut(s)	253, 691, 775, 1133, 1206
MhlI	GDGCHC	2 cut(s)	43, 82
MlyI	GAGTC	2 cut(s)	448, 1086
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	3 cut(s)	153, 494, 632
MslI	CAYNNNNRTG	1 cut(s)	879
MspI	CCGG	3 cut(s)	82, 755, 1089
MspR9I	CCNGG	3 cut(s)	82, 865, 1100
Mva1269I	GAATGC	2 cut(s)	385, 813
MvaI	CCWGG	2 cut(s)	865, 1100
MvnI	CGCG	3 cut(s)	203, 836, 908
MwoI	GCNNNNNNNGC	9 cut(s)	11, 101, 211, 389, 455, 560, 810, 1022, 1134
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	701
NdeII	GATC	3 cut(s)	306, 1080, 1160
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	9 cut(s)	47, 94, 134, 160, 280, 295, 315, 409, 439
NlaIV	GGNNCC	4 cut(s)	220, 568, 610, 1210
NmuCI	GTSAC	1 cut(s)	787
NspI	RCATGY	2 cut(s)	134, 315
NspV	TTCGAA	1 cut(s)	1217
PagI	TCATGA	1 cut(s)	435
PciI	ACATGT	1 cut(s)	130
PctI	GAATGC	2 cut(s)	385, 813
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	3 cut(s)	85, 620, 854
PinAI	ACCGGT	1 cut(s)	754
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	2 cut(s)	447, 1086
PpsI	GAGTC	2 cut(s)	447, 1086
PscI	ACATGT	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	863, 1098
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	2 cut(s)	863, 1098
PspN4I	GGNNCC	4 cut(s)	220, 568, 610, 1210
PspPI	GGNCC	6 cut(s)	218, 593, 608, 687, 871, 968
PstI	CTGCAG	3 cut(s)	111, 484, 1174
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	4 cut(s)	31, 329, 989, 1077
RsaNI	GTAC	4 cut(s)	30, 328, 988, 1076
RseI	CAYNNNNRTG	1 cut(s)	879
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	153, 494, 632
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	3 cut(s)	306, 1080, 1160
Sau96I	GGNCC	6 cut(s)	218, 593, 608, 687, 871, 968
ScaI	AGTACT	2 cut(s)	31, 1077
SchI	GAGTC	2 cut(s)	448, 1086
ScrFI	CCNGG	3 cut(s)	82, 865, 1100
SduI	GDGCHC	2 cut(s)	43, 82
SexAI	ACCWGGT	1 cut(s)	1098
SfaNI	GCATC	2 cut(s)	57, 658
SfcI	CTRYAG	4 cut(s)	107, 480, 998, 1170
SfuI	TTCGAA	1 cut(s)	1217
SinI	GGWCC	4 cut(s)	218, 608, 687, 871
SmiMI	CAYNNNNRTG	1 cut(s)	879
SpeI	ACTAGT	1 cut(s)	32
SsiI	CCGC	3 cut(s)	257, 836, 908
SspI	AATATT	2 cut(s)	429, 629
SspMI	CTAG	4 cut(s)	33, 236, 459, 732
SstI	GAGCTC	1 cut(s)	43
StyD4I	CCNGG	3 cut(s)	80, 863, 1098
StyI	CCWWGG	3 cut(s)	534, 672, 690
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	1217
TaqII	GACCGA	1 cut(s)	206
TatI	WGTACW	2 cut(s)	29, 1075
TfiI	GAWTC	3 cut(s)	85, 620, 854
Tru1I	TTAA	3 cut(s)	153, 494, 632
Tru9I	TTAA	3 cut(s)	153, 494, 632
TscAI	CASTG	2 cut(s)	978, 990
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	6 cut(s)	9, 394, 424, 1134, 1155, 1191
TspGWI	ACGGA	1 cut(s)	1018
TspRI	CASTG	2 cut(s)	978, 990
VpaK11BI	GGWCC	4 cut(s)	218, 608, 687, 871
XapI	RAATTY	3 cut(s)	262, 1130, 1152
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	2 cut(s)	134, 315
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	4 cut(s)	33, 236, 459, 732
ZrmI	AGTACT	2 cut(s)	31, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.