Rh2CG140900

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005515
Physical Location & Seq
Reverse (-)
12434216 .. 12435423
1208 bp
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UTR
Exon/CDS
Intron
Rh2CG140900.1

Sequence Viewer

Length: 534 bp
ATGCAAGGATTCATATGGCTTCAACTGTCCTTCAGTTCATCTATGCAGGGGAAAGATAGACCACCACTGAATATTTCCCATGTCATGAAGTTTTTTCTCCTAGGACTTCTTGGGGTGACATGCAATCAAGGCTTGTATCTCTTTGGTTTAAAGAACACCTCCCCCACATTTGTTTCGACAATAGAGAATGCAGTCCCTGCAATAACATTTCTCATGGCTGCCTTATTCAGAATTGAACAAATGCACTTGAATAGAAAATATGGTAAAGCCAAAGTGCTTGGAACTCTTGCTTCTGTTGCTGGAGCCTCAGTCATAACCTTTTACAAGGGGCCAACTATTTATGTTCCTCCAAGTACTTCACCTTTAAGCCAATCCCATATGCTCAACTCATTATTTGGAGATGTCAAGGAGGAGAATTGGACCTTTGGTTACATCTGTGTAATAAGTCATTGCCTATGTTGGTCTACCTGGATTGTGCTACAAGCACCTGTTCTGAAGAAATACCCAGCTCGCCTCTCAGTCAGGTGTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

177

Amino Acids

19.69

Weight (kDa)

9.54

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 19 - 106 6.6e-10 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 464
AcuI CTGAAG 2 cut(s) 16, 515
AfaI GTAC 1 cut(s) 355
AgsI TTSAA 3 cut(s) 23, 236, 250
AjnI CCWGG 1 cut(s) 467
AluBI AGCT 1 cut(s) 509
AluI AGCT 1 cut(s) 509
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 218
AspA2I CCTAGG 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 329, 420
AsuHPI GGTGA 2 cut(s) 127, 351
AvaII GGWCC 1 cut(s) 420
AvrII CCTAGG 1 cut(s) 100
BbvI GCAGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 469
BfaI CTAG 1 cut(s) 101
BisI GCNGC 1 cut(s) 219
BlnI CCTAGG 1 cut(s) 100
BlsI GCNGC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 469
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 329, 420
BmiI GGNNCC 2 cut(s) 304, 330
BmrFI CCNGG 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bse3DI GCAATG 1 cut(s) 448
BseBI CCWGG 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 2 cut(s) 321, 531
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 205
BseYI CCCAGC 1 cut(s) 505
BshFI GGCC 1 cut(s) 331
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 1 cut(s) 331
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 2 cut(s) 320, 530
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 304, 330
BsrDI GCAATG 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 469
Bst4CI ACNGT 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 2 cut(s) 307, 517
BstMWI GCNNNNNNNGC 3 cut(s) 129, 197, 296
BstNI CCWGG 1 cut(s) 469
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 511
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 329, 420
Csp6I GTAC 1 cut(s) 354
CviAII CATG 4 cut(s) 80, 85, 120, 214
CviJI RGCY 8 cut(s) 19, 132, 218, 269, 305, 331, 369, 509
CviKI_1 RGCY 8 cut(s) 19, 132, 218, 269, 305, 331, 369, 509
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 2 cut(s) 307, 517
DraI TTTAAA 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 16, 515
EcoRII CCWGG 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 4 cut(s) 83, 88, 123, 217
FaqI GGGAC 1 cut(s) 179
FatI CATG 4 cut(s) 79, 84, 119, 213
FauNDI CATATG 2 cut(s) 14, 378
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 101
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 331
Hin1II CATG 4 cut(s) 83, 88, 123, 217
HinfI GANTC 1 cut(s) 9
HphI GGTGA 2 cut(s) 127, 351
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 2 cut(s) 230, 495
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4V TGCA 6 cut(s) 4, 46, 123, 191, 200, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 197, 296
HpyF3I CTNAG 2 cut(s) 307, 517
Hsp92II CATG 4 cut(s) 83, 88, 123, 217
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 8 cut(s) 32, 210, 285, 454, 481, 501, 508, 519
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 115, 428
MboII GAAGA 1 cut(s) 508
MluCI AATT 2 cut(s) 231, 415
MnlI CCTC 5 cut(s) 169, 316, 357, 403, 524
MseI TTAA 2 cut(s) 149, 365
MspR9I CCNGG 1 cut(s) 469
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 469
MwoI GCNNNNNNNGC 3 cut(s) 129, 197, 296
NdeI CATATG 2 cut(s) 14, 378
NlaIII CATG 4 cut(s) 83, 88, 123, 217
NlaIV GGNNCC 2 cut(s) 304, 330
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 123
PagI TCATGA 1 cut(s) 84
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 1 cut(s) 467
PspN4I GGNNCC 2 cut(s) 304, 330
PspPI GGNCC 2 cut(s) 329, 420
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SaqAI TTAA 2 cut(s) 149, 365
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 2 cut(s) 329, 420
ScaI AGTACT 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 469
SetI ASST 8 cut(s) 161, 320, 364, 425, 470, 490, 511, 527
SinI GGWCC 1 cut(s) 420
Sse9I AATT 2 cut(s) 231, 415
SspI AATATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 467
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 176
TasI AATT 2 cut(s) 231, 415
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 2 cut(s) 149, 365
Tru9I TTAA 2 cut(s) 149, 365
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 27, 101
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 420
XceI RCATGY 1 cut(s) 123
XmaJI CCTAGG 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 464
XspI CTAG 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.