Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005515

Physical Location & Seq

Genomic Coordinates Reverse (-)

11536279 .. 11545312

Gene Structure 9034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTGATGAGGCTGGTTCATCATCAAGTACTAGTAGAGCTCATGGCAAGAGACTATGGTGTATGATGCCTGAACGTGCCCGGATTCACATGGCATTGACTGCCCTGCAGTTCAGTTATGCAGGGCAACATGTCATCCTCAGAACTGTGCTTAACATGGGTGTAAGCAAGCTTGTGTTCCCAGTTTACAGGAACATCATCGCGCTGCTTCTGCTCGGTCCCTTTGCATACTTTCTAGAGAAGAAAGATAGACCACCACTAAATTTTGGCCTTGTCATGCGGTTTTTCCTCATGGGACTTCTTGGGATCACATGCAATCAAGGATTGTACCTCTTGGGTTTGGAAAACACTTCGCCAACATTTGCTTCTGCAATAGAGAATGCAGTCCCTGCAATTACATTTTTCATGGCTGCACTATTCAGAATTGAAGAAGTTCACTTGAATAGAAAAGATGGCAAAGCCAAGGTGCTTGGAACTCTGGCTTCTGTTGCTGGAGCCTCAGTAATAACCATTTACAAAGGGCCAACAATTTATGGACCCCCAAGTGATTCACAATATTTAAACCAATCTCATTCTCTGTTCTCATCATTTGGAGATGCCAAGGAGAAGAATTGGACCTTGGGATGCATATGTCTAATTGGTCATTGCCTGTGTTGGTCTAGCTGGATTGTGCTACAAGCACCGGTTTTGAAGAAATACCCAGCTCGCCTTTCAGTCACCTCATTTACTTGCTTCTTTGGCATTCTGCAATGTTCTGCAATCGCGGGGATTGTAGAGAGAGATTCCCGAGCCTGGCAGGTCCATTCTGGTGGTGAAGTTGTTGCTATTCTCTACGCGGGAGTGGTGGCTTCAGCAATGGCATTTGCATTACAGATATGGGTGATTGAACGAGGAGGCCCAGTGTTCGTTTCAGTGTACCTGCCTCTACAGACATTACTGGTAGCTCTAATGGCCTCAGTCATTTTAGGTGAACAATTCTACTTGGGAGGCATTATTGGAGCAGTGTTGATCATAGCAGGACTGTACGTGGTGGTGTGGGGAAAAAGCAAAGAGAGCAAATTTGGCAATGAAATCAAGATGGAACCTTCACCAGTGCCATTGAACATTGATGATCAGATTAAATATTATTCTGAAGAAGAAAAAGAATCTTCTGTCGTCCACCCATTGCTCCCTACCTCTTCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

396

Amino Acids

43.18

Weight (kDa)

8.8

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	37 - 170	1.4e-13	EamA-like transporter family
EamA	PF00892	207 - 345	6e-17	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12390 FvH4_1g12390
rosa_chinensis	RchiOBHm_Chr2g0100221 RchiOBHm_Chr2g0100231 RchiOBHm_Chr2g0100241
rosa_laevigata	RLG00000016947 RLG00000016948 RLG00000016949
rosa_multiflora	Rmu_sc0002547.1_g000006 Rmu_sc0002547.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142450 Rroxscaffold_2G00142460 Rroxscaffold_2G00142470
rosa_rugosa	Rorug02G0086600 Rorug02G0086700
rosa_samantha	Rh2AG135600 Rh2AG135700 Rh2BG139000 Rh2BG139100 Rh2BG139200 Rh2CG140800 Rh2CG140900 Rh2CG141000 Rh2DG141000 Rh2DG141100 Rh2DG141200
rosa_wichuraiana	Rw2G010590 Rw2G010600 Rw2G010610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	787, 927
AccII	CGCG	3 cut(s)	203, 764, 836
AciI	CCGC	3 cut(s)	280, 764, 836
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	262, 1058
AcuI	CTGAAG	2 cut(s)	834, 1152
AfaI	GTAC	4 cut(s)	31, 329, 917, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	792
AflIII	ACRYGT	1 cut(s)	130
AgeI	ACCGGT	1 cut(s)	682
AgsI	TTSAA	6 cut(s)	428, 442, 691, 887, 1102, 1182
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	791
AjuI	GAANNNNNNNTTGG	4 cut(s)	349, 381, 602, 634
AluBI	AGCT	5 cut(s)	41, 172, 663, 704, 944
AluI	AGCT	5 cut(s)	41, 172, 663, 704, 944
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	786
AoxI	GGCC	4 cut(s)	268, 521, 895, 951
ApeKI	GCWGC	2 cut(s)	205, 410
ApoI	RAATTY	2 cut(s)	262, 1058
AsiGI	ACCGGT	1 cut(s)	682
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	6 cut(s)	218, 521, 536, 615, 799, 896
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	5 cut(s)	709, 824, 892, 980, 1080
AvaI	CYCGRG	1 cut(s)	786
AvaII	GGWCC	4 cut(s)	218, 536, 615, 799
BaeGI	GKGCMC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	192, 397
BccI	CCATC	2 cut(s)	446, 1072
BciT130I	CCWGG	1 cut(s)	793
BclI	TGATCA	2 cut(s)	1008, 1111
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	46
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	3 cut(s)	33, 236, 660
BfmI	CTRYAG	2 cut(s)	107, 926
BfuAI	ACCTGC	2 cut(s)	787, 927
BisI	GCNGC	2 cut(s)	206, 411
BlsI	GCNGC	2 cut(s)	207, 412
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	82, 793
Bme18I	GGWCC	4 cut(s)	218, 536, 615, 799
BmeT110I	CYCGRG	1 cut(s)	786
BmgT120I	GGNCC	6 cut(s)	218, 521, 536, 615, 799, 896
BmiI	GGNNCC	4 cut(s)	220, 496, 538, 1083
BmrFI	CCNGG	2 cut(s)	82, 793
BmrI	ACTGGG	2 cut(s)	176, 893
BmsI	GCATC	3 cut(s)	57, 586, 614
BmuI	ACTGGG	2 cut(s)	176, 893
BpmI	CTGGAG	1 cut(s)	513
BpuMI	CCSGG	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	1027
BsaJI	CCNNGG	3 cut(s)	462, 600, 618
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	4 cut(s)	486, 516, 885, 915
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	4 cut(s)	182, 899, 942, 1091
Bse3DI	GCAATG	5 cut(s)	643, 755, 861, 1072, 1163
BseBI	CCWGG	1 cut(s)	793
BseDI	CCNNGG	3 cut(s)	462, 600, 618
BseGI	GGATG	2 cut(s)	135, 629
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMI	GCAATG	5 cut(s)	643, 755, 861, 1072, 1163
BseMII	CTCAG	3 cut(s)	154, 513, 969
BseNI	ACTGG	4 cut(s)	182, 899, 942, 1091
BseRI	GAGGAG	1 cut(s)	906
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	192, 397
BseYI	CCCAGC	1 cut(s)	700
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	3 cut(s)	203, 764, 836
BshFI	GGCC	4 cut(s)	270, 523, 897, 953
BshTI	ACCGGT	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	786
BsiSI	CCGG	2 cut(s)	82, 683
BslFI	GGGAC	3 cut(s)	204, 309, 371
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	3 cut(s)	204, 309, 371
BsmI	GAATGC	2 cut(s)	385, 741
BsnI	GGCC	4 cut(s)	270, 523, 897, 953
BsoBI	CYCGRG	1 cut(s)	786
Bsp1286I	GDGCHC	2 cut(s)	43, 82
Bsp143I	GATC	3 cut(s)	306, 1008, 1111
BspACI	CCGC	3 cut(s)	280, 764, 836
BspANI	GGCC	4 cut(s)	270, 523, 897, 953
BspCNI	CTCAG	3 cut(s)	153, 512, 968
BspFNI	CGCG	3 cut(s)	203, 764, 836
BspLI	GGNNCC	4 cut(s)	220, 496, 538, 1083
BspMAI	CTGCAG	1 cut(s)	111
BspMI	ACCTGC	2 cut(s)	787, 927
BspPI	GGATC	1 cut(s)	314
BsrDI	GCAATG	5 cut(s)	643, 755, 861, 1072, 1163
BsrFI	RCCGGY	1 cut(s)	682
BsrI	ACTGG	4 cut(s)	182, 899, 942, 1091
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	3 cut(s)	462, 600, 618
BssMI	GATC	3 cut(s)	306, 1008, 1111
BssT1I	CCWWGG	3 cut(s)	462, 600, 618
Bst2UI	CCWGG	1 cut(s)	793
Bst4CI	ACNGT	2 cut(s)	148, 1023
Bst6I	CTCTTC	1 cut(s)	1183
BstAPI	GCANNNNNTGC	2 cut(s)	101, 389
BstBAI	YACGTR	1 cut(s)	1027
BstC8I	GCNNGC	2 cut(s)	170, 706
BstDEI	CTNAG	3 cut(s)	140, 499, 955
BstF5I	GGATG	2 cut(s)	135, 629
BstFNI	CGCG	3 cut(s)	203, 764, 836
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	3 cut(s)	309, 1011, 1114
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	3 cut(s)	306, 1008, 1111
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 101, 211, 389, 488, 738, 950, 1053, 1062
BstNI	CCWGG	1 cut(s)	793
BstNSI	RCATGY	2 cut(s)	134, 315
BstSCI	CCNGG	2 cut(s)	80, 791
BstSFI	CTRYAG	2 cut(s)	107, 926
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	3 cut(s)	203, 764, 836
BstV1I	GCAGC	2 cut(s)	192, 397
BstXI	CCANNNNNNTGG	1 cut(s)	809
BsuRI	GGCC	4 cut(s)	270, 523, 897, 953
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	135, 629
BtsI	GCAGTG	1 cut(s)	1008
BtsIMutI	CAGTG	4 cut(s)	906, 918, 1008, 1098
BveI	ACCTGC	2 cut(s)	787, 927
Cac8I	GCNNGC	2 cut(s)	170, 706
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	6 cut(s)	218, 521, 536, 615, 799, 896
Csp6I	GTAC	4 cut(s)	30, 328, 916, 1024
CspAI	ACCGGT	1 cut(s)	682
CviAII	CATG	8 cut(s)	44, 91, 131, 157, 277, 292, 312, 406
CviQI	GTAC	4 cut(s)	30, 328, 916, 1024
DdeI	CTNAG	3 cut(s)	140, 499, 955
DpnI	GATC	3 cut(s)	308, 1010, 1113
DpnII	GATC	3 cut(s)	306, 1008, 1111
DraI	TTTAAA	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	1183
EarI	CTCTTC	1 cut(s)	1183
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	3 cut(s)	462, 600, 618
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	4 cut(s)	218, 536, 615, 799
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	834, 1152
Eco88I	CYCGRG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	791
EcoT14I	CCWWGG	3 cut(s)	462, 600, 618
EcoT22I	ATGCAT	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	3 cut(s)	462, 600, 618
FaeI	CATG	8 cut(s)	47, 94, 134, 160, 280, 295, 315, 409
FaqI	GGGAC	3 cut(s)	204, 309, 371
FatI	CATG	8 cut(s)	43, 90, 130, 156, 276, 291, 311, 405
FauI	CCCGC	2 cut(s)	757, 829
FauNDI	CATATG	1 cut(s)	629
FbaI	TGATCA	2 cut(s)	1008, 1111
Fnu4HI	GCNGC	2 cut(s)	206, 411
FokI	GGATG	2 cut(s)	122, 636
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	206, 411
FspBI	CTAG	3 cut(s)	33, 236, 660
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	206, 411
GsaI	CCCAGC	1 cut(s)	704
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	4 cut(s)	270, 523, 897, 953
HapII	CCGG	2 cut(s)	82, 683
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	8 cut(s)	47, 94, 134, 160, 280, 295, 315, 409
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	4 cut(s)	85, 548, 782, 1145
HpaII	CCGG	2 cut(s)	82, 683
HphI	GGTGA	5 cut(s)	709, 824, 892, 980, 1080
Hpy166II	GTNNAC	5 cut(s)	187, 436, 916, 971, 1159
Hpy188I	TCNGA	4 cut(s)	143, 422, 1116, 1132
Hpy188III	TCNNGA	3 cut(s)	236, 786, 1075
Hpy8I	GTNNAC	5 cut(s)	187, 436, 916, 971, 1159
HpyAV	CCTTC	1 cut(s)	1095
HpyCH4III	ACNGT	2 cut(s)	148, 1023
HpyCH4IV	ACGT	2 cut(s)	76, 1026
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 101, 211, 389, 488, 738, 950, 1053, 1062
HpyF3I	CTNAG	3 cut(s)	140, 499, 955
HpySE526I	ACGT	2 cut(s)	76, 1026
Hsp92II	CATG	8 cut(s)	47, 94, 134, 160, 280, 295, 315, 409
HspAI	GCGC	1 cut(s)	203
Ksp22I	TGATCA	2 cut(s)	1008, 1111
Kzo9I	GATC	3 cut(s)	306, 1008, 1111
LmnI	GCTCC	3 cut(s)	494, 998, 1173
Lsp1109I	GCAGC	2 cut(s)	192, 397
LweI	GCATC	3 cut(s)	57, 586, 614
MaeI	CTAG	3 cut(s)	33, 236, 660
MaeII	ACGT	2 cut(s)	76, 1026
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	3 cut(s)	308, 1010, 1113
MboI	GATC	3 cut(s)	306, 1008, 1111
MboII	GAAGA	8 cut(s)	253, 440, 619, 703, 1140, 1145, 1148, 1170
MhlI	GDGCHC	2 cut(s)	43, 82
MluCI	AATT	8 cut(s)	262, 393, 423, 528, 610, 636, 974, 1058
Mph1103I	ATGCAT	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	3 cut(s)	153, 560, 1119
MslI	CAYNNNNRTG	1 cut(s)	807
MspI	CCGG	2 cut(s)	82, 683
MspR9I	CCNGG	2 cut(s)	82, 793
Mva1269I	GAATGC	2 cut(s)	385, 741
MvaI	CCWGG	1 cut(s)	793
MvnI	CGCG	3 cut(s)	203, 764, 836
MwoI	GCNNNNNNNGC	9 cut(s)	11, 101, 211, 389, 488, 738, 950, 1053, 1062
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	629
NdeII	GATC	3 cut(s)	306, 1008, 1111
NlaIII	CATG	8 cut(s)	47, 94, 134, 160, 280, 295, 315, 409
NlaIV	GGNNCC	4 cut(s)	220, 496, 538, 1083
NmuCI	GTSAC	1 cut(s)	715
NsiI	ATGCAT	1 cut(s)	629
NspI	RCATGY	2 cut(s)	134, 315
PciI	ACATGT	1 cut(s)	130
PctI	GAATGC	2 cut(s)	385, 741
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	85, 548, 782, 1145
PinAI	ACCGGT	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	207, 412
Ppu21I	YACGTR	1 cut(s)	1027
PscI	ACATGT	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	791
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	791
PspN4I	GGNNCC	4 cut(s)	220, 496, 538, 1083
PspPI	GGNCC	6 cut(s)	218, 521, 536, 615, 799, 896
PstI	CTGCAG	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	4 cut(s)	31, 329, 917, 1025
RsaNI	GTAC	4 cut(s)	30, 328, 916, 1024
RseI	CAYNNNNRTG	1 cut(s)	807
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	153, 560, 1119
SatI	GCNGC	2 cut(s)	206, 411
Sau3AI	GATC	3 cut(s)	306, 1008, 1111
Sau96I	GGNCC	6 cut(s)	218, 521, 536, 615, 799, 896
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	82, 793
SduI	GDGCHC	2 cut(s)	43, 82
SfaNI	GCATC	3 cut(s)	57, 586, 614
SfcI	CTRYAG	2 cut(s)	107, 926
SinI	GGWCC	4 cut(s)	218, 536, 615, 799
SmiMI	CAYNNNNRTG	1 cut(s)	807
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	8 cut(s)	262, 393, 423, 528, 610, 636, 974, 1058
SsiI	CCGC	3 cut(s)	280, 764, 836
SspI	AATATT	2 cut(s)	557, 1124
SspMI	CTAG	3 cut(s)	33, 236, 660
SstI	GAGCTC	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	80, 791
StyI	CCWWGG	3 cut(s)	462, 600, 618
TaaI	ACNGT	2 cut(s)	148, 1023
TaiI	ACGT	2 cut(s)	79, 1029
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	8 cut(s)	262, 393, 423, 528, 610, 636, 974, 1058
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	4 cut(s)	85, 548, 782, 1145
Tru1I	TTAA	3 cut(s)	153, 560, 1119
Tru9I	TTAA	3 cut(s)	153, 560, 1119
TscAI	CASTG	4 cut(s)	906, 918, 1008, 1098
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	2 cut(s)	205, 410
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	3 cut(s)	9, 394, 1083
TspRI	CASTG	4 cut(s)	906, 918, 1008, 1098
VpaK11BI	GGWCC	4 cut(s)	218, 536, 615, 799
XapI	RAATTY	2 cut(s)	262, 1058
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	2 cut(s)	134, 315
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	3 cut(s)	33, 236, 660
ZrmI	AGTACT	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.